Gchil8953.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8953.t1
Unique Name	Gchil8953.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	789

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:382994..385360 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1041139.KB902746_gene3235
PFAMs	Glycos_transf_2,PilZ
Max annot lvl	28211\|Alphaproteobacteria
KEGG rclass	RC00005
KEGG ko	ko:K00694
KEGG TC	4.D.3.1.2,4.D.3.1.5,4.D.3.1.6
KEGG Reaction	R02889
KEGG Pathway	ko00500,ko01100,ko02026,map00500,map01100,map02026
Evalue	1.87e-44
EggNOG OGs	COG1215@1\|root,COG1215@2\|Bacteria,1MWF8@1224\|Proteobacteria,2TS1X@28211\|Alphaproteobacteria,4B8H3@82115\|Rhizobiaceae
EC	2.4.1.12
Description	Glycosyl transferase family 21
COG category	M
CAZy	GT2
BRITE	ko00000,ko00001,ko01000,ko01003,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8953	Gchil8953	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 382994..385360 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8953.t1.stop1	Gchil8953.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 382994..382996 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8953.t1.CDS1	Gchil8953.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 382994..385360 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8953.t1.exon1	Gchil8953.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 382994..385360 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8953.t1.start1	Gchil8953.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 385358..385360 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8953.t1	Gchil8953.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 382994..385360 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:382994..385360-
coding sequence from alignment at tig00004370_pilon:382994..385360-

mRNA sequence

>Gchil8953.t1 ID=Gchil8953.t1|Name=Gchil8953.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=789bp
MVLPPDPSTFKRQWRAGGGPRAQKPIKPLLAAQWRPGRPCHWMEQSSLSR
LQSRLRRILYLAQFLATAAYLQFRYRRTIAVFDRSKLIPYYVYQLCFFAL
ECLCAFPLLLQMMQVWNVCRRNCVDFKHIPVELIKPPSESSSPPQTHSLT
THASSRTAHHVYPTIAVYIPCYNESSELVRQTVEGALAIEYPAQLLNVYL
CDDGNDPVKKAMISTLKTRHHNLSYITRPEHNHAKAGNLNHALQNTHSDL
VITLDADFIPRPNIVQRLLPYYYVWDPQSAMYEFNHTLAVVQTPQHFRNL
SPYDSDPLDQRSLLFFQVIQPGKDWLNASTMVGTNNLISRAALEHASFYP
YYSITEDTAMSLKFHSLGYRTYYVNESLATGLATTTLRGNLRQRARWMKG
DWQILFSRHGPFLARGLTIAQRLLYLNMGLGRLMSFVFMIFDAASIALLL
GGITPLDVQHPLIFIIYLAAFLTTASLAQFSLTAGGKGLHKSAAASVVFE
TIFRYSTMKGLLAYIFKGQNLVFKVTDKSTATETTKAPKKGDLADEVQHS
SEDDDDDASSYSHMSASGVRDHATPEYFSDLEELDIASEHSEHSEHSEHS
EHSEHSEHSTEVVLDLKETEKADSTGCCGAKRRKSRQHRRLRRKEVCRNL
KRIWFNIFAAIVLIFSIVWGLLHPRFVDTTIDGKVTPIENGDLFPMALAV
GFIGASLLPHLLAIFLCFRPYVSGWMLTDVVHGRCDHFAVHPRTGKLFVP
WSYIVLVTLGRMLLIFGSMVFVLVYTILNSHPIEIGLP*

spliced messenger RNA

>Gchil8953.t1 ID=Gchil8953.t1|Name=Gchil8953.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2367bp|location=Sequence derived from alignment at tig00004370_pilon:382994..385360- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTTCCCCCAGACCCGTCCACCTTCAAGCGCCAGTGGCGAGCCGG
CGGCGGTCCGCGCGCCCAAAAGCCCATCAAACCGCTACTCGCCGCCCAAT
GGCGCCCCGGTCGTCCATGTCACTGGATGGAGCAATCTTCCCTTTCCCGG
CTTCAATCGCGTCTACGTCGCATTCTTTATCTCGCCCAGTTTCTCGCCAC
CGCCGCCTACCTTCAATTTCGCTATCGACGCACCATCGCCGTCTTTGACC
GTTCCAAACTCATTCCCTACTACGTCTACCAGCTCTGCTTTTTCGCCCTC
GAGTGTCTTTGCGCTTTCCCGCTCTTGCTGCAGATGATGCAGGTGTGGAA
TGTGTGTCGTCGCAACTGCGTTGATTTCAAGCACATCCCCGTCGAGCTCA
TCAAACCACCCTCCGAATCCTCCTCGCCTCCGCAGACACACAGTCTCACT
ACGCACGCTTCATCGCGCACTGCGCATCACGTTTACCCCACCATTGCCGT
GTACATCCCGTGCTACAACGAGTCATCCGAGCTCGTGCGACAAACCGTCG
AGGGCGCCCTGGCAATCGAATATCCCGCCCAGTTGCTCAATGTGTATCTG
TGCGACGACGGAAATGACCCCGTCAAGAAGGCCATGATTTCCACCCTCAA
AACCAGGCATCACAACCTGTCTTACATCACCAGACCAGAGCACAACCACG
CCAAGGCTGGCAACCTCAACCACGCCCTGCAAAACACTCACAGCGACCTT
GTCATCACCCTCGACGCCGACTTCATCCCTCGTCCAAACATTGTACAGCG
CCTCCTGCCTTACTACTACGTGTGGGACCCGCAATCTGCCATGTACGAGT
TCAATCACACCCTGGCCGTTGTGCAGACGCCGCAGCACTTTCGCAACCTC
TCTCCCTATGACAGCGACCCTCTGGATCAGCGCTCTCTTCTGTTCTTTCA
GGTCATCCAACCCGGAAAGGACTGGTTGAATGCCTCTACCATGGTCGGCA
CCAACAATCTCATCAGCCGCGCAGCACTTGAACACGCCTCCTTCTATCCG
TATTATTCCATCACCGAGGATACTGCAATGTCGCTCAAATTCCACAGTTT
GGGCTATCGCACCTACTATGTGAACGAATCGCTCGCCACAGGCTTGGCTA
CCACCACGCTGCGCGGTAACTTGCGACAGCGTGCTAGATGGATGAAGGGC
GACTGGCAAATTCTGTTTTCGAGACACGGTCCGTTCCTTGCGCGCGGGCT
CACCATTGCTCAACGTTTACTGTACCTCAACATGGGGCTCGGAAGGCTCA
TGTCGTTTGTCTTCATGATTTTTGATGCCGCCTCCATCGCGCTGCTTCTG
GGCGGCATAACCCCGCTCGACGTTCAGCACCCCCTTATATTCATTATATA
TCTGGCTGCTTTTCTGACCACCGCGTCGCTGGCTCAATTTTCGCTTACAG
CCGGCGGCAAGGGGCTTCACAAATCGGCCGCTGCAAGCGTCGTGTTCGAA
ACCATATTTAGGTATTCCACCATGAAGGGACTGCTGGCTTACATTTTCAA
AGGACAGAACCTCGTGTTTAAGGTCACCGACAAATCGACCGCCACGGAGA
CGACCAAAGCTCCGAAGAAAGGAGATCTGGCAGATGAGGTGCAACATAGT
TCGGAGGACGACGACGACGATGCTTCATCCTACTCTCATATGTCTGCGTC
TGGTGTCCGAGACCATGCGACTCCGGAGTACTTTTCTGATCTGGAAGAGT
TGGACATTGCTTCTGAACATTCTGAGCACTCTGAGCACTCTGAGCACTCT
GAGCACTCTGAGCACTCTGAACACTCTACGGAAGTTGTTCTTGACCTTAA
AGAAACAGAGAAAGCTGACTCGACCGGCTGTTGCGGAGCGAAGCGCCGAA
AATCCCGACAGCATAGGCGCCTTCGCAGAAAAGAAGTGTGTCGCAACCTC
AAACGAATCTGGTTCAATATCTTTGCAGCAATTGTGCTGATATTTTCCAT
AGTTTGGGGACTGCTGCACCCGCGATTCGTCGACACAACGATCGATGGAA
AAGTCACACCAATCGAAAACGGCGACTTGTTTCCGATGGCGCTGGCGGTT
GGTTTTATTGGCGCTAGCTTGTTGCCCCATTTGCTTGCCATTTTTCTGTG
CTTCCGGCCATATGTTTCGGGCTGGATGTTGACGGATGTGGTGCACGGAA
GATGTGACCATTTTGCCGTGCATCCCAGAACTGGAAAGTTATTCGTGCCG
TGGTCTTACATTGTTCTTGTCACTCTTGGACGAATGTTGCTTATTTTCGG
ATCCATGGTGTTTGTTCTGGTTTATACTATTCTCAACTCTCATCCAATAG
AAATTGGATTACCGTAG

protein sequence of Gchil8953.t1

>Gchil8953.t1 ID=Gchil8953.t1|Name=Gchil8953.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=789bp
MVLPPDPSTFKRQWRAGGGPRAQKPIKPLLAAQWRPGRPCHWMEQSSLSR
LQSRLRRILYLAQFLATAAYLQFRYRRTIAVFDRSKLIPYYVYQLCFFAL
ECLCAFPLLLQMMQVWNVCRRNCVDFKHIPVELIKPPSESSSPPQTHSLT
THASSRTAHHVYPTIAVYIPCYNESSELVRQTVEGALAIEYPAQLLNVYL
CDDGNDPVKKAMISTLKTRHHNLSYITRPEHNHAKAGNLNHALQNTHSDL
VITLDADFIPRPNIVQRLLPYYYVWDPQSAMYEFNHTLAVVQTPQHFRNL
SPYDSDPLDQRSLLFFQVIQPGKDWLNASTMVGTNNLISRAALEHASFYP
YYSITEDTAMSLKFHSLGYRTYYVNESLATGLATTTLRGNLRQRARWMKG
DWQILFSRHGPFLARGLTIAQRLLYLNMGLGRLMSFVFMIFDAASIALLL
GGITPLDVQHPLIFIIYLAAFLTTASLAQFSLTAGGKGLHKSAAASVVFE
TIFRYSTMKGLLAYIFKGQNLVFKVTDKSTATETTKAPKKGDLADEVQHS
SEDDDDDASSYSHMSASGVRDHATPEYFSDLEELDIASEHSEHSEHSEHS
EHSEHSEHSTEVVLDLKETEKADSTGCCGAKRRKSRQHRRLRRKEVCRNL
KRIWFNIFAAIVLIFSIVWGLLHPRFVDTTIDGKVTPIENGDLFPMALAV
GFIGASLLPHLLAIFLCFRPYVSGWMLTDVVHGRCDHFAVHPRTGKLFVP
WSYIVLVTLGRMLLIFGSMVFVLVYTILNSHPIEIGLP*

mRNA from alignment at tig00004370_pilon:382994..385360-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8953.t1 ID=Gchil8953.t1|Name=Gchil8953.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2367bp|location=Sequence derived from alignment at tig00004370_pilon:382994..385360- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGCTTCCCCCAGACCCGTCCACCTTCAAGCGCCAGTGGCGAGCCGG
CGGCGGTCCGCGCGCCCAAAAGCCCATCAAACCGCTACTCGCCGCCCAAT
GGCGCCCCGGTCGTCCATGTCACTGGATGGAGCAATCTTCCCTTTCCCGG
CTTCAATCGCGTCTACGTCGCATTCTTTATCTCGCCCAGTTTCTCGCCAC
CGCCGCCTACCTTCAATTTCGCTATCGACGCACCATCGCCGTCTTTGACC
GTTCCAAACTCATTCCCTACTACGTCTACCAGCTCTGCTTTTTCGCCCTC
GAGTGTCTTTGCGCTTTCCCGCTCTTGCTGCAGATGATGCAGGTGTGGAA
TGTGTGTCGTCGCAACTGCGTTGATTTCAAGCACATCCCCGTCGAGCTCA
TCAAACCACCCTCCGAATCCTCCTCGCCTCCGCAGACACACAGTCTCACT
ACGCACGCTTCATCGCGCACTGCGCATCACGTTTACCCCACCATTGCCGT
GTACATCCCGTGCTACAACGAGTCATCCGAGCTCGTGCGACAAACCGTCG
AGGGCGCCCTGGCAATCGAATATCCCGCCCAGTTGCTCAATGTGTATCTG
TGCGACGACGGAAATGACCCCGTCAAGAAGGCCATGATTTCCACCCTCAA
AACCAGGCATCACAACCTGTCTTACATCACCAGACCAGAGCACAACCACG
CCAAGGCTGGCAACCTCAACCACGCCCTGCAAAACACTCACAGCGACCTT
GTCATCACCCTCGACGCCGACTTCATCCCTCGTCCAAACATTGTACAGCG
CCTCCTGCCTTACTACTACGTGTGGGACCCGCAATCTGCCATGTACGAGT
TCAATCACACCCTGGCCGTTGTGCAGACGCCGCAGCACTTTCGCAACCTC
TCTCCCTATGACAGCGACCCTCTGGATCAGCGCTCTCTTCTGTTCTTTCA
GGTCATCCAACCCGGAAAGGACTGGTTGAATGCCTCTACCATGGTCGGCA
CCAACAATCTCATCAGCCGCGCAGCACTTGAACACGCCTCCTTCTATCCG
TATTATTCCATCACCGAGGATACTGCAATGTCGCTCAAATTCCACAGTTT
GGGCTATCGCACCTACTATGTGAACGAATCGCTCGCCACAGGCTTGGCTA
CCACCACGCTGCGCGGTAACTTGCGACAGCGTGCTAGATGGATGAAGGGC
GACTGGCAAATTCTGTTTTCGAGACACGGTCCGTTCCTTGCGCGCGGGCT
CACCATTGCTCAACGTTTACTGTACCTCAACATGGGGCTCGGAAGGCTCA
TGTCGTTTGTCTTCATGATTTTTGATGCCGCCTCCATCGCGCTGCTTCTG
GGCGGCATAACCCCGCTCGACGTTCAGCACCCCCTTATATTCATTATATA
TCTGGCTGCTTTTCTGACCACCGCGTCGCTGGCTCAATTTTCGCTTACAG
CCGGCGGCAAGGGGCTTCACAAATCGGCCGCTGCAAGCGTCGTGTTCGAA
ACCATATTTAGGTATTCCACCATGAAGGGACTGCTGGCTTACATTTTCAA
AGGACAGAACCTCGTGTTTAAGGTCACCGACAAATCGACCGCCACGGAGA
CGACCAAAGCTCCGAAGAAAGGAGATCTGGCAGATGAGGTGCAACATAGT
TCGGAGGACGACGACGACGATGCTTCATCCTACTCTCATATGTCTGCGTC
TGGTGTCCGAGACCATGCGACTCCGGAGTACTTTTCTGATCTGGAAGAGT
TGGACATTGCTTCTGAACATTCTGAGCACTCTGAGCACTCTGAGCACTCT
GAGCACTCTGAGCACTCTGAACACTCTACGGAAGTTGTTCTTGACCTTAA
AGAAACAGAGAAAGCTGACTCGACCGGCTGTTGCGGAGCGAAGCGCCGAA
AATCCCGACAGCATAGGCGCCTTCGCAGAAAAGAAGTGTGTCGCAACCTC
AAACGAATCTGGTTCAATATCTTTGCAGCAATTGTGCTGATATTTTCCAT
AGTTTGGGGACTGCTGCACCCGCGATTCGTCGACACAACGATCGATGGAA
AAGTCACACCAATCGAAAACGGCGACTTGTTTCCGATGGCGCTGGCGGTT
GGTTTTATTGGCGCTAGCTTGTTGCCCCATTTGCTTGCCATTTTTCTGTG
CTTCCGGCCATATGTTTCGGGCTGGATGTTGACGGATGTGGTGCACGGAA
GATGTGACCATTTTGCCGTGCATCCCAGAACTGGAAAGTTATTCGTGCCG
TGGTCTTACATTGTTCTTGTCACTCTTGGACGAATGTTGCTTATTTTCGG
ATCCATGGTGTTTGTTCTGGTTTATACTATTCTCAACTCTCATCCAATAG
AAATTGGATTACCGTAG

Coding sequence (CDS) from alignment at tig00004370_pilon:382994..385360-

>Gchil8953.t1 ID=Gchil8953.t1|Name=Gchil8953.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2367bp|location=Sequence derived from alignment at tig00004370_pilon:382994..385360- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGCTTCCCCCAGACCCGTCCACCTTCAAGCGCCAGTGGCGAGCCGG
CGGCGGTCCGCGCGCCCAAAAGCCCATCAAACCGCTACTCGCCGCCCAAT
GGCGCCCCGGTCGTCCATGTCACTGGATGGAGCAATCTTCCCTTTCCCGG
CTTCAATCGCGTCTACGTCGCATTCTTTATCTCGCCCAGTTTCTCGCCAC
CGCCGCCTACCTTCAATTTCGCTATCGACGCACCATCGCCGTCTTTGACC
GTTCCAAACTCATTCCCTACTACGTCTACCAGCTCTGCTTTTTCGCCCTC
GAGTGTCTTTGCGCTTTCCCGCTCTTGCTGCAGATGATGCAGGTGTGGAA
TGTGTGTCGTCGCAACTGCGTTGATTTCAAGCACATCCCCGTCGAGCTCA
TCAAACCACCCTCCGAATCCTCCTCGCCTCCGCAGACACACAGTCTCACT
ACGCACGCTTCATCGCGCACTGCGCATCACGTTTACCCCACCATTGCCGT
GTACATCCCGTGCTACAACGAGTCATCCGAGCTCGTGCGACAAACCGTCG
AGGGCGCCCTGGCAATCGAATATCCCGCCCAGTTGCTCAATGTGTATCTG
TGCGACGACGGAAATGACCCCGTCAAGAAGGCCATGATTTCCACCCTCAA
AACCAGGCATCACAACCTGTCTTACATCACCAGACCAGAGCACAACCACG
CCAAGGCTGGCAACCTCAACCACGCCCTGCAAAACACTCACAGCGACCTT
GTCATCACCCTCGACGCCGACTTCATCCCTCGTCCAAACATTGTACAGCG
CCTCCTGCCTTACTACTACGTGTGGGACCCGCAATCTGCCATGTACGAGT
TCAATCACACCCTGGCCGTTGTGCAGACGCCGCAGCACTTTCGCAACCTC
TCTCCCTATGACAGCGACCCTCTGGATCAGCGCTCTCTTCTGTTCTTTCA
GGTCATCCAACCCGGAAAGGACTGGTTGAATGCCTCTACCATGGTCGGCA
CCAACAATCTCATCAGCCGCGCAGCACTTGAACACGCCTCCTTCTATCCG
TATTATTCCATCACCGAGGATACTGCAATGTCGCTCAAATTCCACAGTTT
GGGCTATCGCACCTACTATGTGAACGAATCGCTCGCCACAGGCTTGGCTA
CCACCACGCTGCGCGGTAACTTGCGACAGCGTGCTAGATGGATGAAGGGC
GACTGGCAAATTCTGTTTTCGAGACACGGTCCGTTCCTTGCGCGCGGGCT
CACCATTGCTCAACGTTTACTGTACCTCAACATGGGGCTCGGAAGGCTCA
TGTCGTTTGTCTTCATGATTTTTGATGCCGCCTCCATCGCGCTGCTTCTG
GGCGGCATAACCCCGCTCGACGTTCAGCACCCCCTTATATTCATTATATA
TCTGGCTGCTTTTCTGACCACCGCGTCGCTGGCTCAATTTTCGCTTACAG
CCGGCGGCAAGGGGCTTCACAAATCGGCCGCTGCAAGCGTCGTGTTCGAA
ACCATATTTAGGTATTCCACCATGAAGGGACTGCTGGCTTACATTTTCAA
AGGACAGAACCTCGTGTTTAAGGTCACCGACAAATCGACCGCCACGGAGA
CGACCAAAGCTCCGAAGAAAGGAGATCTGGCAGATGAGGTGCAACATAGT
TCGGAGGACGACGACGACGATGCTTCATCCTACTCTCATATGTCTGCGTC
TGGTGTCCGAGACCATGCGACTCCGGAGTACTTTTCTGATCTGGAAGAGT
TGGACATTGCTTCTGAACATTCTGAGCACTCTGAGCACTCTGAGCACTCT
GAGCACTCTGAGCACTCTGAACACTCTACGGAAGTTGTTCTTGACCTTAA
AGAAACAGAGAAAGCTGACTCGACCGGCTGTTGCGGAGCGAAGCGCCGAA
AATCCCGACAGCATAGGCGCCTTCGCAGAAAAGAAGTGTGTCGCAACCTC
AAACGAATCTGGTTCAATATCTTTGCAGCAATTGTGCTGATATTTTCCAT
AGTTTGGGGACTGCTGCACCCGCGATTCGTCGACACAACGATCGATGGAA
AAGTCACACCAATCGAAAACGGCGACTTGTTTCCGATGGCGCTGGCGGTT
GGTTTTATTGGCGCTAGCTTGTTGCCCCATTTGCTTGCCATTTTTCTGTG
CTTCCGGCCATATGTTTCGGGCTGGATGTTGACGGATGTGGTGCACGGAA
GATGTGACCATTTTGCCGTGCATCCCAGAACTGGAAAGTTATTCGTGCCG
TGGTCTTACATTGTTCTTGTCACTCTTGGACGAATGTTGCTTATTTTCGG
ATCCATGGTGTTTGTTCTGGTTTATACTATTCTCAACTCTCATCCAATAG
AAATTGGATTACCGTAG