Gchil8949.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8949.t1
Unique NameGchil8949.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length313
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:265658..266596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8949Gchil8949Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 265658..266596 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8949.t1.start1Gchil8949.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 265658..265660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8949.t1.CDS1Gchil8949.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 265658..266596 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8949.t1.exon1Gchil8949.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 265658..266596 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8949.t1.stop1Gchil8949.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 266594..266596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8949.t1Gchil8949.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 265658..266596 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8949.t1 ID=Gchil8949.t1|Name=Gchil8949.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=313bp
MKGVFNRNYSSTCVTNVFPEEQEERAWYDVISAFRSKLNASARLINQQAG
AEYPNPDTVYNFPFVTSTETCLINAIGAYRLDDAWYVNVAITNELKSKHL
EDHGRLYLIEYMGSNGTHANMTLREPSNGYQMHSDASTLHVNDSGSGSPN
FFKPTPFTENIALIRALDKVQLYWQQAHDATSLSSIFILFLPLFLNILPI
AMFADVTRLSMLFYSLLSDILTTVPLAIKGVELIHIGSTTTVGVVIRMTS
FHNGTRPTEAGAEVFLASCQTKAGVYNAGIAFLVIAIAFMVVGLILEVVV
RQLVAQRRMKLT*
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spliced messenger RNA

>Gchil8949.t1 ID=Gchil8949.t1|Name=Gchil8949.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=939bp|location=Sequence derived from alignment at tig00004370_pilon:265658..266596+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGGAGTTTTCAATCGTAATTATTCGTCCACTTGCGTAACAAATGT
ATTTCCTGAAGAACAAGAAGAGAGAGCGTGGTATGATGTAATATCTGCTT
TCCGGAGCAAGCTCAATGCCAGTGCCAGGTTGATTAATCAGCAGGCCGGT
GCCGAGTATCCCAATCCCGATACCGTTTACAATTTTCCGTTTGTTACTAG
TACTGAGACTTGTTTGATAAACGCAATTGGTGCGTATCGGTTAGATGATG
CTTGGTATGTCAACGTTGCAATCACTAATGAATTGAAGTCGAAACACTTG
GAAGACCATGGACGACTGTATCTCATCGAATATATGGGAAGCAATGGAAC
GCATGCAAATATGACGTTACGAGAGCCTTCAAACGGCTACCAAATGCATT
CTGATGCTAGTACTCTCCACGTGAACGACAGTGGTTCAGGTTCACCGAAC
TTCTTCAAGCCTACTCCGTTTACAGAAAACATCGCGCTGATTAGGGCACT
TGACAAAGTTCAGTTGTATTGGCAACAAGCTCACGATGCAACCAGTCTTT
CAAGCATTTTCATTCTCTTTCTTCCACTTTTTCTCAACATTCTTCCTATT
GCGATGTTTGCCGACGTTACCAGATTATCTATGTTATTTTATTCACTGCT
GAGCGATATATTGACGACAGTGCCACTAGCTATAAAAGGAGTTGAACTCA
TACATATCGGATCGACAACGACGGTGGGAGTTGTGATTCGTATGACTTCT
TTTCATAATGGCACGCGACCGACTGAGGCGGGGGCTGAAGTTTTTCTCGC
ATCTTGTCAAACAAAAGCAGGCGTTTACAATGCTGGAATTGCGTTTCTGG
TCATTGCGATTGCGTTCATGGTGGTTGGGCTCATATTAGAAGTGGTTGTG
AGACAACTGGTGGCGCAACGGAGAATGAAGCTGACGTGA
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protein sequence of Gchil8949.t1

>Gchil8949.t1 ID=Gchil8949.t1|Name=Gchil8949.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=313bp
MKGVFNRNYSSTCVTNVFPEEQEERAWYDVISAFRSKLNASARLINQQAG
AEYPNPDTVYNFPFVTSTETCLINAIGAYRLDDAWYVNVAITNELKSKHL
EDHGRLYLIEYMGSNGTHANMTLREPSNGYQMHSDASTLHVNDSGSGSPN
FFKPTPFTENIALIRALDKVQLYWQQAHDATSLSSIFILFLPLFLNILPI
AMFADVTRLSMLFYSLLSDILTTVPLAIKGVELIHIGSTTTVGVVIRMTS
FHNGTRPTEAGAEVFLASCQTKAGVYNAGIAFLVIAIAFMVVGLILEVVV
RQLVAQRRMKLT*
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mRNA from alignment at tig00004370_pilon:265658..266596+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8949.t1 ID=Gchil8949.t1|Name=Gchil8949.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=939bp|location=Sequence derived from alignment at tig00004370_pilon:265658..266596+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGGAGTTTTCAATCGTAATTATTCGTCCACTTGCGTAACAAATGT
ATTTCCTGAAGAACAAGAAGAGAGAGCGTGGTATGATGTAATATCTGCTT
TCCGGAGCAAGCTCAATGCCAGTGCCAGGTTGATTAATCAGCAGGCCGGT
GCCGAGTATCCCAATCCCGATACCGTTTACAATTTTCCGTTTGTTACTAG
TACTGAGACTTGTTTGATAAACGCAATTGGTGCGTATCGGTTAGATGATG
CTTGGTATGTCAACGTTGCAATCACTAATGAATTGAAGTCGAAACACTTG
GAAGACCATGGACGACTGTATCTCATCGAATATATGGGAAGCAATGGAAC
GCATGCAAATATGACGTTACGAGAGCCTTCAAACGGCTACCAAATGCATT
CTGATGCTAGTACTCTCCACGTGAACGACAGTGGTTCAGGTTCACCGAAC
TTCTTCAAGCCTACTCCGTTTACAGAAAACATCGCGCTGATTAGGGCACT
TGACAAAGTTCAGTTGTATTGGCAACAAGCTCACGATGCAACCAGTCTTT
CAAGCATTTTCATTCTCTTTCTTCCACTTTTTCTCAACATTCTTCCTATT
GCGATGTTTGCCGACGTTACCAGATTATCTATGTTATTTTATTCACTGCT
GAGCGATATATTGACGACAGTGCCACTAGCTATAAAAGGAGTTGAACTCA
TACATATCGGATCGACAACGACGGTGGGAGTTGTGATTCGTATGACTTCT
TTTCATAATGGCACGCGACCGACTGAGGCGGGGGCTGAAGTTTTTCTCGC
ATCTTGTCAAACAAAAGCAGGCGTTTACAATGCTGGAATTGCGTTTCTGG
TCATTGCGATTGCGTTCATGGTGGTTGGGCTCATATTAGAAGTGGTTGTG
AGACAACTGGTGGCGCAACGGAGAATGAAGCTGACGTGA
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Coding sequence (CDS) from alignment at tig00004370_pilon:265658..266596+

>Gchil8949.t1 ID=Gchil8949.t1|Name=Gchil8949.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=939bp|location=Sequence derived from alignment at tig00004370_pilon:265658..266596+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGGAGTTTTCAATCGTAATTATTCGTCCACTTGCGTAACAAATGT
ATTTCCTGAAGAACAAGAAGAGAGAGCGTGGTATGATGTAATATCTGCTT
TCCGGAGCAAGCTCAATGCCAGTGCCAGGTTGATTAATCAGCAGGCCGGT
GCCGAGTATCCCAATCCCGATACCGTTTACAATTTTCCGTTTGTTACTAG
TACTGAGACTTGTTTGATAAACGCAATTGGTGCGTATCGGTTAGATGATG
CTTGGTATGTCAACGTTGCAATCACTAATGAATTGAAGTCGAAACACTTG
GAAGACCATGGACGACTGTATCTCATCGAATATATGGGAAGCAATGGAAC
GCATGCAAATATGACGTTACGAGAGCCTTCAAACGGCTACCAAATGCATT
CTGATGCTAGTACTCTCCACGTGAACGACAGTGGTTCAGGTTCACCGAAC
TTCTTCAAGCCTACTCCGTTTACAGAAAACATCGCGCTGATTAGGGCACT
TGACAAAGTTCAGTTGTATTGGCAACAAGCTCACGATGCAACCAGTCTTT
CAAGCATTTTCATTCTCTTTCTTCCACTTTTTCTCAACATTCTTCCTATT
GCGATGTTTGCCGACGTTACCAGATTATCTATGTTATTTTATTCACTGCT
GAGCGATATATTGACGACAGTGCCACTAGCTATAAAAGGAGTTGAACTCA
TACATATCGGATCGACAACGACGGTGGGAGTTGTGATTCGTATGACTTCT
TTTCATAATGGCACGCGACCGACTGAGGCGGGGGCTGAAGTTTTTCTCGC
ATCTTGTCAAACAAAAGCAGGCGTTTACAATGCTGGAATTGCGTTTCTGG
TCATTGCGATTGCGTTCATGGTGGTTGGGCTCATATTAGAAGTGGTTGTG
AGACAACTGGTGGCGCAACGGAGAATGAAGCTGACGTGA
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