Gchil8946.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8946.t1
Unique NameGchil8946.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length325
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:257426..259156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42099.EPrPV00000019235
PFAMsPGI
Max annot lvl121069|Pythiales
Evalue3.12e-70
EggNOG OGsCOG0166@1|root,KOG2446@2759|Eukaryota,1MCBF@121069|Pythiales
DescriptionGlucose-6-phosphate isomerase. Source PGD
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8946Gchil8946Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 257426..259156 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8946.t1Gchil8946.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 257426..259156 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8946.t1.start1Gchil8946.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 257426..257428 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8946.t1.CDS1Gchil8946.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 257426..258208 +
Gchil8946.t1.CDS2Gchil8946.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 258965..259156 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8946.t1.exon1Gchil8946.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 257426..258208 +
Gchil8946.t1.exon2Gchil8946.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 258965..259156 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8946.t1.intron1Gchil8946.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 258209..258964 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8946.t1.stop1Gchil8946.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 259154..259156 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8946.t1 ID=Gchil8946.t1|Name=Gchil8946.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=325bp
MATPPPDAQQHPPEQSEQSEQSEQSAHDALRHAAAHAQTIRLAPLLQDVN
RTARMSATHNGLYLDYSRQLLSESALHALIHRLPSAVSLRDRIHAMFAAH
KINATEQRAVLHVALRAPSHAHFIVDHVDVVPHVHAVLDAIASFSHQVRL
GQRLGATGQILRDVVAIGIGGSYLGPQFVFEALRMHPDAARAAANRRLRF
LANVDPVDVARAREGLNPATTLVVVISKTFTTAETMLNARTMRAWLVDAL
GEHAVAKHIVAGFVWGINSFDQWGVELGKVLAKSVREQLFVSRTQHVPVS
GFNASTTALLNKFLAGSVSKAPPA*
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spliced messenger RNA

>Gchil8946.t1 ID=Gchil8946.t1|Name=Gchil8946.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=975bp|location=Sequence derived from alignment at tig00004370_pilon:257426..259156+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACGCCACCACCCGACGCCCAACAACACCCCCccgagcagtccga
gcagtccgagcagtccgagcagtccgCGCACGACGCGCTGCGCCACGCCG
CCGCACACGCACAAACCATCCGTCTGGCACCGCTTCTACAAGATGTCAAC
CGCACTGCGCGCATGAGCGCCACCCACAACGGTTTGTACCTGGACTATTC
GCGTCAGCTTCTCTCCGAATCCGCCCTCCACGCCCTCATACACCGTTTAC
CATCTGCCGTTTCCCTGCGCGATCGCATTCATGCCATGTTTGCCGCGCAC
AAAATCAATGCTACCGAACAACGTGCCGTGCTTCACGTCGCCTTGCGTGC
CCCGTCACACGCCCATTTCATAGTGGACCACGTCGATGTTGTGCCGCACG
TGCATGCCGTGCTTGACGCCATTGCTTCGTTTTCGCATCAGGTGCGTCTC
GGTCAGCGTTTGGGCGCCACAGGACAAATATTGCGTGATGTGGTGGCTAT
CGGTATTGGTGGCTCGTATTTAGGCCCGCAGTTTGTGTTTGAGGCCTTGC
GTATGCATCCCGATGCTGCCCGTGCTGCTGCCAACCGTCGTCTGCGCTTT
TTGGCAAACGTTGACCCGGTCGACGTGGCGCGTGCGCGTGAGGGACTCAA
TCCAGCCACTACGCTCGTCGTCGTCATCTCCAAGACCTTCACCACCGCCG
AAACCATGCTCAACGCCCGCACCATGCGCGCCTGGCTCGTCGACGCACTG
GGAGAACATGCTGTCGCAAaacatatcgtcgccGGCTTTGTGTGGGGTAT
CAACTCGTTTGACCAGTGGGGGGTCGAGCTGGGTAAGGTTCTTGCAAAAA
GCGTGCGAGAACAATTGTTTGTGTCGCGCACGCAGCACGTGCCTGTTAGC
GGCTTCAATGCGTCTACTACGGCGCTGCTTAACAAATTCCTGGCCGGCTC
CGTGTCCAAGGCGCCGCCCGCGTGA
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protein sequence of Gchil8946.t1

>Gchil8946.t1 ID=Gchil8946.t1|Name=Gchil8946.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=325bp
MATPPPDAQQHPPEQSEQSEQSEQSAHDALRHAAAHAQTIRLAPLLQDVN
RTARMSATHNGLYLDYSRQLLSESALHALIHRLPSAVSLRDRIHAMFAAH
KINATEQRAVLHVALRAPSHAHFIVDHVDVVPHVHAVLDAIASFSHQVRL
GQRLGATGQILRDVVAIGIGGSYLGPQFVFEALRMHPDAARAAANRRLRF
LANVDPVDVARAREGLNPATTLVVVISKTFTTAETMLNARTMRAWLVDAL
GEHAVAKHIVAGFVWGINSFDQWGVELGKVLAKSVREQLFVSRTQHVPVS
GFNASTTALLNKFLAGSVSKAPPA*
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mRNA from alignment at tig00004370_pilon:257426..259156+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8946.t1 ID=Gchil8946.t1|Name=Gchil8946.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1731bp|location=Sequence derived from alignment at tig00004370_pilon:257426..259156+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCACGCCACCACCCGACGCCCAACAACACCCCCccgagcagtccga
gcagtccgagcagtccgagcagtccgCGCACGACGCGCTGCGCCACGCCG
CCGCACACGCACAAACCATCCGTCTGGCACCGCTTCTACAAGATGTCAAC
CGCACTGCGCGCATGAGCGCCACCCACAACGGTTTGTACCTGGACTATTC
GCGTCAGCTTCTCTCCGAATCCGCCCTCCACGCCCTCATACACCGTTTAC
CATCTGCCGTTTCCCTGCGCGATCGCATTCATGCCATGTTTGCCGCGCAC
AAAATCAATGCTACCGAACAACGTGCCGTGCTTCACGTCGCCTTGCGTGC
CCCGTCACACGCCCATTTCATAGTGGACCACGTCGATGTTGTGCCGCACG
TGCATGCCGTGCTTGACGCCATTGCTTCGTTTTCGCATCAGGTGCGTCTC
GGTCAGCGTTTGGGCGCCACAGGACAAATATTGCGTGATGTGGTGGCTAT
CGGTATTGGTGGCTCGTATTTAGGCCCGCAGTTTGTGTTTGAGGCCTTGC
GTATGCATCCCGATGCTGCCCGTGCTGCTGCCAACCGTCGTCTGCGCTTT
TTGGCAAACGTTGACCCGGTCGACGTGGCGCGTGCGCGTGAGGGACTCAA
TCCAGCCACTACGCTCGTCGTCGTCATCTCCAAGACCTTCACCACCGCCG
AAACCATGCTCAACGCCCGCACCATGCGCGCCTGGCTCGTCGACGCACTG
GGAGAACATGCTGTCGCAAaacatatcgtcgccgttagtaccaacctcac
ggctgcccaacaattcgggattgaaaagcaaaacgtgttcggcttctggg
attgggtcggcggtcgctactccgtgtgctccgccgtcggtgttctgccg
cttgcattacaatatggttttgatattgtgcgccaattcttggatggcgc
acatgatatggatgaacactttcgttgcgcaccgtttcatcaaaacttgc
ccgtgcttatgggactcatcggcgtgtggaactgtacgtttttgggacat
gcgtcgcgtgcgttgctgccgtatcagcaggcgttgctcaagttggcacc
gcacattcagcaggtggacatggaaagcaatggaaagcgcgtgaggttgg
acggctcggcgttggcggcgcctgccggccccgtcaactttggcgagcca
ggcacaaatggtcaacactccttctaccagctcattcaccaggggcgcgt
ggtaccgtgcgactttgtcggcgtcattcgctcacaagtgcccattgcgc
ttgacgaccaacgcgtgtgcaatcatgacgaactcatgagcaacttcttc
gcgcagcccgacgccctggccgtgggcaaatccgctcaacaatgtcgcgc
cgagggcgtGTGTGAAGAACTTGTGCCGCACAAAACATTCCCCGGAAACC
GCCCCAGCTCAGTGCTGCTTATGAACGAACTCACCCCGTTCTCCACGGGA
CAATTGCTGGCCTTGTTCGAACATCGAACCGCCGTGGAGGGCTTTGTGTG
GGGTATCAACTCGTTTGACCAGTGGGGGGTCGAGCTGGGTAAGGTTCTTG
CAAAAAGCGTGCGAGAACAATTGTTTGTGTCGCGCACGCAGCACGTGCCT
GTTAGCGGCTTCAATGCGTCTACTACGGCGCTGCTTAACAAATTCCTGGC
CGGCTCCGTGTCCAAGGCGCCGCCCGCGTGA
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Coding sequence (CDS) from alignment at tig00004370_pilon:257426..259156+

>Gchil8946.t1 ID=Gchil8946.t1|Name=Gchil8946.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=975bp|location=Sequence derived from alignment at tig00004370_pilon:257426..259156+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCACGCCACCACCCGACGCCCAACAACACCCCCccgagcagtccga
gcagtccgagcagtccgagcagtccgCGCACGACGCGCTGCGCCACGCCG
CCGCACACGCACAAACCATCCGTCTGGCACCGCTTCTACAAGATGTCAAC
CGCACTGCGCGCATGAGCGCCACCCACAACGGTTTGTACCTGGACTATTC
GCGTCAGCTTCTCTCCGAATCCGCCCTCCACGCCCTCATACACCGTTTAC
CATCTGCCGTTTCCCTGCGCGATCGCATTCATGCCATGTTTGCCGCGCAC
AAAATCAATGCTACCGAACAACGTGCCGTGCTTCACGTCGCCTTGCGTGC
CCCGTCACACGCCCATTTCATAGTGGACCACGTCGATGTTGTGCCGCACG
TGCATGCCGTGCTTGACGCCATTGCTTCGTTTTCGCATCAGGTGCGTCTC
GGTCAGCGTTTGGGCGCCACAGGACAAATATTGCGTGATGTGGTGGCTAT
CGGTATTGGTGGCTCGTATTTAGGCCCGCAGTTTGTGTTTGAGGCCTTGC
GTATGCATCCCGATGCTGCCCGTGCTGCTGCCAACCGTCGTCTGCGCTTT
TTGGCAAACGTTGACCCGGTCGACGTGGCGCGTGCGCGTGAGGGACTCAA
TCCAGCCACTACGCTCGTCGTCGTCATCTCCAAGACCTTCACCACCGCCG
AAACCATGCTCAACGCCCGCACCATGCGCGCCTGGCTCGTCGACGCACTG
GGAGAACATGCTGTCGCAAaacatatcgtcgccGGCTTTGTGTGGGGTAT
CAACTCGTTTGACCAGTGGGGGGTCGAGCTGGGTAAGGTTCTTGCAAAAA
GCGTGCGAGAACAATTGTTTGTGTCGCGCACGCAGCACGTGCCTGTTAGC
GGCTTCAATGCGTCTACTACGGCGCTGCTTAACAAATTCCTGGCCGGCTC
CGTGTCCAAGGCGCCGCCCGCGTGA
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