Gchil8944.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8944.t1
Unique NameGchil8944.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length517
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:250056..251606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX50730
Preferred nameTRYR
PFAMsPyr_redox_2,Pyr_redox_dim
Max annot lvl2759|Eukaryota
KEGG rclassRC00011,RC01003
KEGG koko:K00383,ko:K04283
KEGG ReactionR00094,R00115,R03821,R08356,R08357
KEGG Pathwayko00480,ko01100,ko04918,map00480,map01100,map04918
Evalue8.25e-201
EggNOG OGsCOG1249@1|root,KOG0405@2759|Eukaryota
EC1.8.1.12,1.8.1.7
Descriptionglutathione-disulfide reductase activity
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8944Gchil8944Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 250056..251606 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8944.t1.stop1Gchil8944.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 250056..250058 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8944.t1.CDS1Gchil8944.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 250056..251606 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8944.t1.exon1Gchil8944.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 250056..251606 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8944.t1.start1Gchil8944.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 251604..251606 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8944.t1Gchil8944.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 250056..251606 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8944.t1 ID=Gchil8944.t1|Name=Gchil8944.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=517bp
MSSAFVSPAVLRSARFITAFTLPQSRSLTPFRPRSRRASSRFLFNMSAVA
AQDTQQSTLAHGYQYDLFVIGAGSGGVRASRIAANHGAKVAVAEYAPLGG
TCVNVGCVPKKLFVYGSHYGHDFHDASAYGWDVPTPSLDWSRLIRNKNAE
IERLNGIYGRLLDKAGVHLIQGKAKFVDSHTVQVGDAQYTADKILVATGG
HPFVPQFEGREHAITSNEAFYLEQLPKRCLIVGGGYIAVEFACIFHGYGS
QIVQLYRRDLFLRGFDDDVRKHLAEQMRITGVDVRFNSNVKRIVKNADGS
FTVTSTNDELFETDLVLYATGRVPSTEGIALEAAGVKTGDSGKILVDDWN
KTNVDHIYAIGDVTDRVCLTPVAIAEGHAFADTLYGDKKRNVNYNDIPTA
VFSTPSIGTCGLTETQAREKYGKNGVDVYKTAFRPMKHTLTKREGEKTFM
KLIVEKSTDKVVGCHLLDAAAGEVIQILGVAMKAGATKADFDATMPVHPV
SAEEIVTLRTKEPDPQ*
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spliced messenger RNA

>Gchil8944.t1 ID=Gchil8944.t1|Name=Gchil8944.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1551bp|location=Sequence derived from alignment at tig00004370_pilon:250056..251606- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCCGCCTTCGTGTCGCCTGCTGTTCTACGCTCGGCGCGCTTCAT
CACCGCTTTCACGTTGCCACAGTCGCGATCTTTGACGCCCTTTCGTCCTC
GTTCCCGACGCGCTTCTTCGCGCTTTCTTTTCAATATGTCTGCCGTCGCG
GCGCAGGACACGCAACAGAGCACCTTGGCCCATGGCTATCAGTATGATCT
GTTTGTGATCGGTGCTGGTTCTGGCGGCGTTCGAGCATCACGAATTGCCG
CGAACCACGGTGCCAAGGTTGCGGTGGCCGAGTACGCACCTCTGGGTGGT
ACCTGTGTCAATGTGGGTTGCGTGCCGAAGAAATTGTTTGTGTACGGAAG
TCATTATGGTCATGATTTTCACGATGCCTCAGCGTATGGCTGGGATGTAC
CCACGCCTTCTTTGGACTGGTCAAGATTGATTCGCAACAAGAACGCCGAG
ATCGAGCGATTAAACGGTATCTATGGTAGATTGCTGGATAAGGCTGGTGT
CCATCTCATTCAGGGCAAGGCAAAATTTGTTGACAGTCATACCGTTCAAG
TTGGCGATGCGCAATACACTGCTGACAAGATTCTTGTCGCCACCGGTGGG
CATCCTTTTGTGCCGCAATTTGAAGGGAGAGAACATGCCATTACCAGCAA
CGAAGCGTTTTATCTTGAGCAGCTACCAAAGCGCTGTTTAATTGTGGGTG
GCGGCTACATTGCAGTTGAGTTTGCCTGCATCTTTCACGGTTATGGCTCT
CAAATAGTCCAGCTTTATCGTCGCGACTTGTTCTTGAGAGGTTTTGATGA
TGACGTTCGGAAACATCTCGCGGAACAGATGAGAATCACCGGTGTTGATG
TTCGTTTCAATTCTAATGTCAAAAGGATTGTGAAAAATGCCGACGGCTCA
TTCACTGTAACCTCAACCAACGATGAACTGTTTGAGACCGATCTTGTTCT
GTATGCCACCGGCAGAGTTCCAAGCACGGAAGGAATCGCGCTTGAAGCCG
CCGGTGTGAAGACCGGTGACAGTGGCAAGATCCTGGTCGATGATTGGAAT
AAGACTAATGTTGATCATATCTACGCCATTGGAGATGTCACAGATAGGGT
ATGTCTCACCCCAGTTGCCATTGCAGAGGGCCATGCGTTCGCTGACACTC
TCTACGGGGACAAGAAGAGAAACGTCAACTATAATGACATCCCTACTGCC
GTATTTTCAACTCCAAGCATTGGGACTTGCGGTCTAACTGAAACTCAGGC
AAGAGAAAAGTATGGCAAGAATGGTGTCGATGTGTACAAGACAGCATTCC
GGCCAATGAAACACACTCTCACCAAGCGCGAAGGTGAGAAAACATTCATG
AAGCTCATCGTTGAGAAAAGCACGGATAAAGTGGTCGGATGTCACTTGCT
GGATGCTGCCGCTGGTGAAGTCATTCAAATACTGGGTGTCGCCATGAAGG
CCGGTGCCACAAAGGCAGACTTTGACGCTACAATGCCGGTGCATCCTGTT
AGCGCCGAAGAGATTGTAACTTTGAGAACAAAGGAACCTGATCCACAATA
A
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protein sequence of Gchil8944.t1

>Gchil8944.t1 ID=Gchil8944.t1|Name=Gchil8944.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=517bp
MSSAFVSPAVLRSARFITAFTLPQSRSLTPFRPRSRRASSRFLFNMSAVA
AQDTQQSTLAHGYQYDLFVIGAGSGGVRASRIAANHGAKVAVAEYAPLGG
TCVNVGCVPKKLFVYGSHYGHDFHDASAYGWDVPTPSLDWSRLIRNKNAE
IERLNGIYGRLLDKAGVHLIQGKAKFVDSHTVQVGDAQYTADKILVATGG
HPFVPQFEGREHAITSNEAFYLEQLPKRCLIVGGGYIAVEFACIFHGYGS
QIVQLYRRDLFLRGFDDDVRKHLAEQMRITGVDVRFNSNVKRIVKNADGS
FTVTSTNDELFETDLVLYATGRVPSTEGIALEAAGVKTGDSGKILVDDWN
KTNVDHIYAIGDVTDRVCLTPVAIAEGHAFADTLYGDKKRNVNYNDIPTA
VFSTPSIGTCGLTETQAREKYGKNGVDVYKTAFRPMKHTLTKREGEKTFM
KLIVEKSTDKVVGCHLLDAAAGEVIQILGVAMKAGATKADFDATMPVHPV
SAEEIVTLRTKEPDPQ*
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mRNA from alignment at tig00004370_pilon:250056..251606-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8944.t1 ID=Gchil8944.t1|Name=Gchil8944.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1551bp|location=Sequence derived from alignment at tig00004370_pilon:250056..251606- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTCCGCCTTCGTGTCGCCTGCTGTTCTACGCTCGGCGCGCTTCAT
CACCGCTTTCACGTTGCCACAGTCGCGATCTTTGACGCCCTTTCGTCCTC
GTTCCCGACGCGCTTCTTCGCGCTTTCTTTTCAATATGTCTGCCGTCGCG
GCGCAGGACACGCAACAGAGCACCTTGGCCCATGGCTATCAGTATGATCT
GTTTGTGATCGGTGCTGGTTCTGGCGGCGTTCGAGCATCACGAATTGCCG
CGAACCACGGTGCCAAGGTTGCGGTGGCCGAGTACGCACCTCTGGGTGGT
ACCTGTGTCAATGTGGGTTGCGTGCCGAAGAAATTGTTTGTGTACGGAAG
TCATTATGGTCATGATTTTCACGATGCCTCAGCGTATGGCTGGGATGTAC
CCACGCCTTCTTTGGACTGGTCAAGATTGATTCGCAACAAGAACGCCGAG
ATCGAGCGATTAAACGGTATCTATGGTAGATTGCTGGATAAGGCTGGTGT
CCATCTCATTCAGGGCAAGGCAAAATTTGTTGACAGTCATACCGTTCAAG
TTGGCGATGCGCAATACACTGCTGACAAGATTCTTGTCGCCACCGGTGGG
CATCCTTTTGTGCCGCAATTTGAAGGGAGAGAACATGCCATTACCAGCAA
CGAAGCGTTTTATCTTGAGCAGCTACCAAAGCGCTGTTTAATTGTGGGTG
GCGGCTACATTGCAGTTGAGTTTGCCTGCATCTTTCACGGTTATGGCTCT
CAAATAGTCCAGCTTTATCGTCGCGACTTGTTCTTGAGAGGTTTTGATGA
TGACGTTCGGAAACATCTCGCGGAACAGATGAGAATCACCGGTGTTGATG
TTCGTTTCAATTCTAATGTCAAAAGGATTGTGAAAAATGCCGACGGCTCA
TTCACTGTAACCTCAACCAACGATGAACTGTTTGAGACCGATCTTGTTCT
GTATGCCACCGGCAGAGTTCCAAGCACGGAAGGAATCGCGCTTGAAGCCG
CCGGTGTGAAGACCGGTGACAGTGGCAAGATCCTGGTCGATGATTGGAAT
AAGACTAATGTTGATCATATCTACGCCATTGGAGATGTCACAGATAGGGT
ATGTCTCACCCCAGTTGCCATTGCAGAGGGCCATGCGTTCGCTGACACTC
TCTACGGGGACAAGAAGAGAAACGTCAACTATAATGACATCCCTACTGCC
GTATTTTCAACTCCAAGCATTGGGACTTGCGGTCTAACTGAAACTCAGGC
AAGAGAAAAGTATGGCAAGAATGGTGTCGATGTGTACAAGACAGCATTCC
GGCCAATGAAACACACTCTCACCAAGCGCGAAGGTGAGAAAACATTCATG
AAGCTCATCGTTGAGAAAAGCACGGATAAAGTGGTCGGATGTCACTTGCT
GGATGCTGCCGCTGGTGAAGTCATTCAAATACTGGGTGTCGCCATGAAGG
CCGGTGCCACAAAGGCAGACTTTGACGCTACAATGCCGGTGCATCCTGTT
AGCGCCGAAGAGATTGTAACTTTGAGAACAAAGGAACCTGATCCACAATA
A
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Coding sequence (CDS) from alignment at tig00004370_pilon:250056..251606-

>Gchil8944.t1 ID=Gchil8944.t1|Name=Gchil8944.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1551bp|location=Sequence derived from alignment at tig00004370_pilon:250056..251606- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTCCGCCTTCGTGTCGCCTGCTGTTCTACGCTCGGCGCGCTTCAT
CACCGCTTTCACGTTGCCACAGTCGCGATCTTTGACGCCCTTTCGTCCTC
GTTCCCGACGCGCTTCTTCGCGCTTTCTTTTCAATATGTCTGCCGTCGCG
GCGCAGGACACGCAACAGAGCACCTTGGCCCATGGCTATCAGTATGATCT
GTTTGTGATCGGTGCTGGTTCTGGCGGCGTTCGAGCATCACGAATTGCCG
CGAACCACGGTGCCAAGGTTGCGGTGGCCGAGTACGCACCTCTGGGTGGT
ACCTGTGTCAATGTGGGTTGCGTGCCGAAGAAATTGTTTGTGTACGGAAG
TCATTATGGTCATGATTTTCACGATGCCTCAGCGTATGGCTGGGATGTAC
CCACGCCTTCTTTGGACTGGTCAAGATTGATTCGCAACAAGAACGCCGAG
ATCGAGCGATTAAACGGTATCTATGGTAGATTGCTGGATAAGGCTGGTGT
CCATCTCATTCAGGGCAAGGCAAAATTTGTTGACAGTCATACCGTTCAAG
TTGGCGATGCGCAATACACTGCTGACAAGATTCTTGTCGCCACCGGTGGG
CATCCTTTTGTGCCGCAATTTGAAGGGAGAGAACATGCCATTACCAGCAA
CGAAGCGTTTTATCTTGAGCAGCTACCAAAGCGCTGTTTAATTGTGGGTG
GCGGCTACATTGCAGTTGAGTTTGCCTGCATCTTTCACGGTTATGGCTCT
CAAATAGTCCAGCTTTATCGTCGCGACTTGTTCTTGAGAGGTTTTGATGA
TGACGTTCGGAAACATCTCGCGGAACAGATGAGAATCACCGGTGTTGATG
TTCGTTTCAATTCTAATGTCAAAAGGATTGTGAAAAATGCCGACGGCTCA
TTCACTGTAACCTCAACCAACGATGAACTGTTTGAGACCGATCTTGTTCT
GTATGCCACCGGCAGAGTTCCAAGCACGGAAGGAATCGCGCTTGAAGCCG
CCGGTGTGAAGACCGGTGACAGTGGCAAGATCCTGGTCGATGATTGGAAT
AAGACTAATGTTGATCATATCTACGCCATTGGAGATGTCACAGATAGGGT
ATGTCTCACCCCAGTTGCCATTGCAGAGGGCCATGCGTTCGCTGACACTC
TCTACGGGGACAAGAAGAGAAACGTCAACTATAATGACATCCCTACTGCC
GTATTTTCAACTCCAAGCATTGGGACTTGCGGTCTAACTGAAACTCAGGC
AAGAGAAAAGTATGGCAAGAATGGTGTCGATGTGTACAAGACAGCATTCC
GGCCAATGAAACACACTCTCACCAAGCGCGAAGGTGAGAAAACATTCATG
AAGCTCATCGTTGAGAAAAGCACGGATAAAGTGGTCGGATGTCACTTGCT
GGATGCTGCCGCTGGTGAAGTCATTCAAATACTGGGTGTCGCCATGAAGG
CCGGTGCCACAAAGGCAGACTTTGACGCTACAATGCCGGTGCATCCTGTT
AGCGCCGAAGAGATTGTAACTTTGAGAACAAAGGAACCTGATCCACAATA
A
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