Gchil8943.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8943.t1
Unique Name	Gchil8943.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	585

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:247584..249338 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMP057CT
Max annot lvl	2759\|Eukaryota
Evalue	3.88e-47
EggNOG OGs	2CY8W@1\|root,2S2UA@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8943	Gchil8943	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 247584..249338 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8943.t1.start1	Gchil8943.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 247584..247586 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8943.t1.CDS1	Gchil8943.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 247584..249338 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8943.t1.exon1	Gchil8943.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 247584..249338 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8943.t1.stop1	Gchil8943.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 249336..249338 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8943.t1	Gchil8943.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 247584..249338 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:247584..249338+
coding sequence from alignment at tig00004370_pilon:247584..249338+

mRNA sequence

>Gchil8943.t1 ID=Gchil8943.t1|Name=Gchil8943.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=585bp
MSLAAFSPLLLPPCHATPHPPCLPLSRTALPSRAALRRPSLRCALSESPS
AHPSPPNRSLASLHELTERIADLLHVGSIHNDYLHCPKDAPLGYLHATTH
VVVVFGKHLIRDQLTVEYAKRIITLVKQIARGALSPHVICFTGGNGLNDD
GTISEAAAGYAFFRNVCEEANVDVSAFQFILEHNSHNTKENLRNVIEELR
RRFGADALSACHFTLVSSDYHLIRIQEVHRLSPRQSVLFPLEVSASTWNC
IFAAYPFCVSRDPATAFLGRAVVLANDLGILHVNLKGALIDREFVSKENL
DRLNETFAKMREMYRVIHSNTSATGGFKTDMRKHAETLELAIHHIREVHT
LLGPLNETGSSVPHAHLELGLEHLTSAIRAMRSSMDPDRVLRTHDRMAII
EDMISFVAEQKGTLYSSSSSVSDDSDGGNQHAHIFSENDDVSFFDSVPGK
SSDKRKPTTRMTTAMINEVTWRGGQIFKGNGKKIARDGPNIIIADSAAPM
ASNSTHKTSLGTRRTAAHSDTLAGHLASSLVSNKPPKPRSASTNPRSRSR
SSTARKTQARASTSSKKRNPSARKLASPSQSESV*

spliced messenger RNA

>Gchil8943.t1 ID=Gchil8943.t1|Name=Gchil8943.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1755bp|location=Sequence derived from alignment at tig00004370_pilon:247584..249338+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCTCGCAGCTTTCTCGCCGCTTTTGCTGCCGCCCTGCCACGCCAC
TCCCCATCCCCCATGCCTGCCCCTCAGTCGTACCGCCCTCCCCTCGCGCG
CTGCCTTGCGTCGCCCCTCCCTGCGCTGCGCGCTTTCCGAATCTCCCTCT
GCACACCCCTCACCGCCCAACCGCTCGCTCGCAAGTCTGCACGAGCTCAC
CGAGCGCATTGCCGACCTCCTGCACGTTGGATCCATTCATAATGACTACT
TGCACTGTCCAAAGGATGCTCCCCTGGGTTACTTGCATGCCACCACCCAT
GTCGTTGTCGTCTTCGGAAAGCATCTCATCCGCGATCAGCTTACCGTCGA
ATACGCAAAACGCATCATCACCCTTGTCAAGCAGATTGCTCGCGGTGCTC
TCAGTCCACACGTGATTTGTTTCACTGGCGGAAACGGGCTTAATGATGAC
GGTACCATTTCAGAAGCTGCTGCTGGCTATGCTTTTTTTCGCAATGTCTG
TGAAGAAGCCAACGTCGATGTCTCCGCCTTTCAATTTATTCTTGAGCACA
ACAGCCACAACACCAAAGAAAACCTGCGAAACGTCATCGAAGAATTGCGC
CGTCGTTTCGGCGCTGATGCGCTTTCAGCTTGTCACTTCACCCTCGTGTC
CAGTGACTATCACCTCATTCGCATTCAAGAGGTTCATCGATTGAGCCCTC
GTCAAAGTGTCTTGTTTCCGCTCGAAGTTTCCGCTTCCACTTGGAATTGT
ATCTTTGCAGCATATCCATTTTGTGTCAGTCGCGATCCCGCCACCGCCTT
TCTAGGGCGCGCCGTCGTTCTAGCAAATGATCTTGGTATTCTTCACGTCA
ATCTCAAAGGCGCTCTCATTGACCGTGAATTCGTTTCCAAGGAGAATCTT
GATCGTCTCAACGAAACCTTTGCCAAAATGCGAGAAATGTACCGAGTTAT
CCACTCAAACACCTCTGCTACTGGCGGCTTCAAAACCGACATGCGCAAGC
ACGCAGAAACGCTCGAACTCGCCATTCACCACATTCGCGAGGTACACACT
CTGCTCGGCCCGCTCAACGAGACTGGTTCCTCCGTCCCGCACGCGCACCT
TGAACTTGGACTTGAGCACCTCACAAGCGCCATCCGCGCCATGCGTTCTT
CTATGGATCCTGATCGGGTGCTCCGAACACACGACAGAATGGCCATCATA
GAGGACATGATCAGTTTTGTTGCCGAACAAAAAGGCACACTATATTCATC
GTCATCCTCTGTTTCGGACGACTCTGATGGCGGTAATCAACACGCTCACA
TTTTCTCAGAGAATGACGATGTGTCGTTTTTCGACTCAGTCCCTGGAAAA
TCCTCAGACAAGCGGAAACCAACCACGCGCATGACCACTGCTATGATCAA
CGAGGTCACCTGGAGAGGGGGCCAAATTTTCAAAGGAAACGGCAAGAAAA
TTGCTCGAGATGGACCTAACATCATCATTGCCGACAGCGCTGCCCCCATG
GCATCTAATTCGACTCACAAAACCTCGCTAGGAACCCGTCGAACTGCTGC
TCATTCCGATACTCTGGCTGGTCATCTCGCAAGCTCGTTGGTATCGAACA
AACCACCCAAACCTCGATCTGCTTCCACCAATCCACGTTCTCGTTCTCGC
TCGTCCACCGCTCGCAAGACTCAAGCCCGTGCGTCAACCTCTTCCAAAAA
ACGGAACCCGTCTGCCAGGAAACTTGCGAGTCCGTCGCAGAGCGAGAGTG
TGTAG

protein sequence of Gchil8943.t1

>Gchil8943.t1 ID=Gchil8943.t1|Name=Gchil8943.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=585bp
MSLAAFSPLLLPPCHATPHPPCLPLSRTALPSRAALRRPSLRCALSESPS
AHPSPPNRSLASLHELTERIADLLHVGSIHNDYLHCPKDAPLGYLHATTH
VVVVFGKHLIRDQLTVEYAKRIITLVKQIARGALSPHVICFTGGNGLNDD
GTISEAAAGYAFFRNVCEEANVDVSAFQFILEHNSHNTKENLRNVIEELR
RRFGADALSACHFTLVSSDYHLIRIQEVHRLSPRQSVLFPLEVSASTWNC
IFAAYPFCVSRDPATAFLGRAVVLANDLGILHVNLKGALIDREFVSKENL
DRLNETFAKMREMYRVIHSNTSATGGFKTDMRKHAETLELAIHHIREVHT
LLGPLNETGSSVPHAHLELGLEHLTSAIRAMRSSMDPDRVLRTHDRMAII
EDMISFVAEQKGTLYSSSSSVSDDSDGGNQHAHIFSENDDVSFFDSVPGK
SSDKRKPTTRMTTAMINEVTWRGGQIFKGNGKKIARDGPNIIIADSAAPM
ASNSTHKTSLGTRRTAAHSDTLAGHLASSLVSNKPPKPRSASTNPRSRSR
SSTARKTQARASTSSKKRNPSARKLASPSQSESV*

mRNA from alignment at tig00004370_pilon:247584..249338+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8943.t1 ID=Gchil8943.t1|Name=Gchil8943.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1755bp|location=Sequence derived from alignment at tig00004370_pilon:247584..249338+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCTCGCAGCTTTCTCGCCGCTTTTGCTGCCGCCCTGCCACGCCAC
TCCCCATCCCCCATGCCTGCCCCTCAGTCGTACCGCCCTCCCCTCGCGCG
CTGCCTTGCGTCGCCCCTCCCTGCGCTGCGCGCTTTCCGAATCTCCCTCT
GCACACCCCTCACCGCCCAACCGCTCGCTCGCAAGTCTGCACGAGCTCAC
CGAGCGCATTGCCGACCTCCTGCACGTTGGATCCATTCATAATGACTACT
TGCACTGTCCAAAGGATGCTCCCCTGGGTTACTTGCATGCCACCACCCAT
GTCGTTGTCGTCTTCGGAAAGCATCTCATCCGCGATCAGCTTACCGTCGA
ATACGCAAAACGCATCATCACCCTTGTCAAGCAGATTGCTCGCGGTGCTC
TCAGTCCACACGTGATTTGTTTCACTGGCGGAAACGGGCTTAATGATGAC
GGTACCATTTCAGAAGCTGCTGCTGGCTATGCTTTTTTTCGCAATGTCTG
TGAAGAAGCCAACGTCGATGTCTCCGCCTTTCAATTTATTCTTGAGCACA
ACAGCCACAACACCAAAGAAAACCTGCGAAACGTCATCGAAGAATTGCGC
CGTCGTTTCGGCGCTGATGCGCTTTCAGCTTGTCACTTCACCCTCGTGTC
CAGTGACTATCACCTCATTCGCATTCAAGAGGTTCATCGATTGAGCCCTC
GTCAAAGTGTCTTGTTTCCGCTCGAAGTTTCCGCTTCCACTTGGAATTGT
ATCTTTGCAGCATATCCATTTTGTGTCAGTCGCGATCCCGCCACCGCCTT
TCTAGGGCGCGCCGTCGTTCTAGCAAATGATCTTGGTATTCTTCACGTCA
ATCTCAAAGGCGCTCTCATTGACCGTGAATTCGTTTCCAAGGAGAATCTT
GATCGTCTCAACGAAACCTTTGCCAAAATGCGAGAAATGTACCGAGTTAT
CCACTCAAACACCTCTGCTACTGGCGGCTTCAAAACCGACATGCGCAAGC
ACGCAGAAACGCTCGAACTCGCCATTCACCACATTCGCGAGGTACACACT
CTGCTCGGCCCGCTCAACGAGACTGGTTCCTCCGTCCCGCACGCGCACCT
TGAACTTGGACTTGAGCACCTCACAAGCGCCATCCGCGCCATGCGTTCTT
CTATGGATCCTGATCGGGTGCTCCGAACACACGACAGAATGGCCATCATA
GAGGACATGATCAGTTTTGTTGCCGAACAAAAAGGCACACTATATTCATC
GTCATCCTCTGTTTCGGACGACTCTGATGGCGGTAATCAACACGCTCACA
TTTTCTCAGAGAATGACGATGTGTCGTTTTTCGACTCAGTCCCTGGAAAA
TCCTCAGACAAGCGGAAACCAACCACGCGCATGACCACTGCTATGATCAA
CGAGGTCACCTGGAGAGGGGGCCAAATTTTCAAAGGAAACGGCAAGAAAA
TTGCTCGAGATGGACCTAACATCATCATTGCCGACAGCGCTGCCCCCATG
GCATCTAATTCGACTCACAAAACCTCGCTAGGAACCCGTCGAACTGCTGC
TCATTCCGATACTCTGGCTGGTCATCTCGCAAGCTCGTTGGTATCGAACA
AACCACCCAAACCTCGATCTGCTTCCACCAATCCACGTTCTCGTTCTCGC
TCGTCCACCGCTCGCAAGACTCAAGCCCGTGCGTCAACCTCTTCCAAAAA
ACGGAACCCGTCTGCCAGGAAACTTGCGAGTCCGTCGCAGAGCGAGAGTG
TGTAG

Coding sequence (CDS) from alignment at tig00004370_pilon:247584..249338+

>Gchil8943.t1 ID=Gchil8943.t1|Name=Gchil8943.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1755bp|location=Sequence derived from alignment at tig00004370_pilon:247584..249338+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCTCGCAGCTTTCTCGCCGCTTTTGCTGCCGCCCTGCCACGCCAC
TCCCCATCCCCCATGCCTGCCCCTCAGTCGTACCGCCCTCCCCTCGCGCG
CTGCCTTGCGTCGCCCCTCCCTGCGCTGCGCGCTTTCCGAATCTCCCTCT
GCACACCCCTCACCGCCCAACCGCTCGCTCGCAAGTCTGCACGAGCTCAC
CGAGCGCATTGCCGACCTCCTGCACGTTGGATCCATTCATAATGACTACT
TGCACTGTCCAAAGGATGCTCCCCTGGGTTACTTGCATGCCACCACCCAT
GTCGTTGTCGTCTTCGGAAAGCATCTCATCCGCGATCAGCTTACCGTCGA
ATACGCAAAACGCATCATCACCCTTGTCAAGCAGATTGCTCGCGGTGCTC
TCAGTCCACACGTGATTTGTTTCACTGGCGGAAACGGGCTTAATGATGAC
GGTACCATTTCAGAAGCTGCTGCTGGCTATGCTTTTTTTCGCAATGTCTG
TGAAGAAGCCAACGTCGATGTCTCCGCCTTTCAATTTATTCTTGAGCACA
ACAGCCACAACACCAAAGAAAACCTGCGAAACGTCATCGAAGAATTGCGC
CGTCGTTTCGGCGCTGATGCGCTTTCAGCTTGTCACTTCACCCTCGTGTC
CAGTGACTATCACCTCATTCGCATTCAAGAGGTTCATCGATTGAGCCCTC
GTCAAAGTGTCTTGTTTCCGCTCGAAGTTTCCGCTTCCACTTGGAATTGT
ATCTTTGCAGCATATCCATTTTGTGTCAGTCGCGATCCCGCCACCGCCTT
TCTAGGGCGCGCCGTCGTTCTAGCAAATGATCTTGGTATTCTTCACGTCA
ATCTCAAAGGCGCTCTCATTGACCGTGAATTCGTTTCCAAGGAGAATCTT
GATCGTCTCAACGAAACCTTTGCCAAAATGCGAGAAATGTACCGAGTTAT
CCACTCAAACACCTCTGCTACTGGCGGCTTCAAAACCGACATGCGCAAGC
ACGCAGAAACGCTCGAACTCGCCATTCACCACATTCGCGAGGTACACACT
CTGCTCGGCCCGCTCAACGAGACTGGTTCCTCCGTCCCGCACGCGCACCT
TGAACTTGGACTTGAGCACCTCACAAGCGCCATCCGCGCCATGCGTTCTT
CTATGGATCCTGATCGGGTGCTCCGAACACACGACAGAATGGCCATCATA
GAGGACATGATCAGTTTTGTTGCCGAACAAAAAGGCACACTATATTCATC
GTCATCCTCTGTTTCGGACGACTCTGATGGCGGTAATCAACACGCTCACA
TTTTCTCAGAGAATGACGATGTGTCGTTTTTCGACTCAGTCCCTGGAAAA
TCCTCAGACAAGCGGAAACCAACCACGCGCATGACCACTGCTATGATCAA
CGAGGTCACCTGGAGAGGGGGCCAAATTTTCAAAGGAAACGGCAAGAAAA
TTGCTCGAGATGGACCTAACATCATCATTGCCGACAGCGCTGCCCCCATG
GCATCTAATTCGACTCACAAAACCTCGCTAGGAACCCGTCGAACTGCTGC
TCATTCCGATACTCTGGCTGGTCATCTCGCAAGCTCGTTGGTATCGAACA
AACCACCCAAACCTCGATCTGCTTCCACCAATCCACGTTCTCGTTCTCGC
TCGTCCACCGCTCGCAAGACTCAAGCCCGTGCGTCAACCTCTTCCAAAAA
ACGGAACCCGTCTGCCAGGAAACTTGCGAGTCCGTCGCAGAGCGAGAGTG
TGTAG