Gchil8941.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8941.t1
Unique NameGchil8941.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length383
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:242568..243716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog215803.DB30_8490
PFAMsFIST,FIST_C
Max annot lvl28221|Deltaproteobacteria
Evalue2.1e-53
EggNOG OGsCOG3287@1|root,COG3287@2|Bacteria,1R474@1224|Proteobacteria,42PVH@68525|delta/epsilon subdivisions,2WMB4@28221|Deltaproteobacteria,2YWFE@29|Myxococcales
DescriptionFIST N domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8941Gchil8941Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 242568..243716 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8941.t1.stop1Gchil8941.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 242568..242570 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8941.t1.CDS1Gchil8941.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 242568..243716 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8941.t1.exon1Gchil8941.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 242568..243716 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8941.t1.start1Gchil8941.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 243714..243716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8941.t1Gchil8941.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 242568..243716 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8941.t1 ID=Gchil8941.t1|Name=Gchil8941.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=383bp
MLSVSVGSSDLASTAEAVEAALDAAMSTTTSPTVALVTHTVDRSAAEVHD
LIRKRLPDVQIHGATTCAALLSNAGAVPNGVGILLHDSDGMATAACTLEN
CDATEAANRVAAQLKGKLGVVKNVLLSTSPGIEEEVLQTFSTVLPGVAVF
GGSAADNTVTGGWSLHHDQGVFSTGLSAVGIKAGVPFGSCLLPPYKKGEQ
YAIVTKCAGRVIHELDGKSAGEVLREWVGEVIETQSREGGSVLVECASFP
LGVERVSGGWIGIHAAQITAEGSVGLFAEVNEGDKLTVMRKMGGADSATA
ASIGLEHVYKEAMNQGGLTNPKAGILIYCGGLSIAVGDELNKSLEPIKGK
AAMLGMTAFGEQGQVAGRNLHSNLAIGMALFQ*
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spliced messenger RNA

>Gchil8941.t1 ID=Gchil8941.t1|Name=Gchil8941.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1149bp|location=Sequence derived from alignment at tig00004370_pilon:242568..243716- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTATCTGTATCGGTCGGGTCTTCTGACTTAGCGTCCACTGCAGAAGC
TGTGGAGGCGGCGTTGGATGCTGCAATGTCCACGACTACATCGCCCACAG
TGGCTCTTGTTACGCATACGGTGGATCGAAGTGCAGCGGAGGTGCACGAT
CTTATTCGTAAACGTCTTCCAGACGTACAGATCCATGGTGCCACTACGTG
TGCTGCGCTCCTTTCAAATGCCGGCGCGGTGCCTAATGGAGTCGGAATAC
TGCTTCACGATAGTGACGGAATGGCGACGGCAGCTTGTACTCTCGAAAAT
TGTGATGCAACTGAGGCTGCAAATCGTGTGGCCGCACAGCTGAAAGGCAA
GTTGGGAGTCGTGAAAAATGTGTTGCTGTCAACTTCACCGGGTATAGAAG
AGGAAGTTTTGCAGACTTTTTCTACTGTTCTTCCAGGAGTTGCAGTATTT
GGTGGTTCTGCTGCTGACAATACAGTGACCGGAGGATGGAGCCTACATCA
TGACCAAGGTGTGTTTTCAACCGGTTTATCGGCGGTAGGTATTAAAGCTG
GAGTTCCTTTTGGATCATGCCTTCTTCCTCCTTACAAAAAAGGAGAACAG
TATGCGATTGTGACGAAATGCGCCGGGCGTGTAATTCATGAACTAGATGG
GAAGTCGGCTGGTGAGGTGCTTCGGGAATGGGTTGGCGAAGTCATCGAAA
CGCAGTCGAGAGAAGGGGGATCAGTGCTAGTTGAATGTGCATCATTTCCT
CTTGGGGTAGAAAGAGTGTCTGGTGGATGGATAGGAATTCATGCAGCACA
AATAACTGCAGAAGGGAGTGTGGGACTGTTTGCAGAGGTTAACGAAGGGG
ATAAACTAACTGTGATGCGAAAAATGGGAGGTGCTGACTCTGCAACTGCT
GCTTCGATTGGTTTGGAACACGTTTACAAAGAAGCGATGAACCAAGGAGG
ATTGACAAACCCAAAGGCGGGAATTCTGATTTATTGTGGAGGTCTTAGCA
TCGCTGTGGGTGATGAGCTAAATAAGAGTTTGGAACCCATAAAAGGAAAG
GCAGCTATGTTAGGGATGACGGCGTTCGGAGAACAGGGGCAAGTGGCTGG
TCGTAATTTGCACTCAAATCTTGCCATTGGAATGGCGTTGTTTCAGTAG
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protein sequence of Gchil8941.t1

>Gchil8941.t1 ID=Gchil8941.t1|Name=Gchil8941.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=383bp
MLSVSVGSSDLASTAEAVEAALDAAMSTTTSPTVALVTHTVDRSAAEVHD
LIRKRLPDVQIHGATTCAALLSNAGAVPNGVGILLHDSDGMATAACTLEN
CDATEAANRVAAQLKGKLGVVKNVLLSTSPGIEEEVLQTFSTVLPGVAVF
GGSAADNTVTGGWSLHHDQGVFSTGLSAVGIKAGVPFGSCLLPPYKKGEQ
YAIVTKCAGRVIHELDGKSAGEVLREWVGEVIETQSREGGSVLVECASFP
LGVERVSGGWIGIHAAQITAEGSVGLFAEVNEGDKLTVMRKMGGADSATA
ASIGLEHVYKEAMNQGGLTNPKAGILIYCGGLSIAVGDELNKSLEPIKGK
AAMLGMTAFGEQGQVAGRNLHSNLAIGMALFQ*
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mRNA from alignment at tig00004370_pilon:242568..243716-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8941.t1 ID=Gchil8941.t1|Name=Gchil8941.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1149bp|location=Sequence derived from alignment at tig00004370_pilon:242568..243716- (Gracilaria chilensis NLEC103_M9 male)
ATGCTATCTGTATCGGTCGGGTCTTCTGACTTAGCGTCCACTGCAGAAGC
TGTGGAGGCGGCGTTGGATGCTGCAATGTCCACGACTACATCGCCCACAG
TGGCTCTTGTTACGCATACGGTGGATCGAAGTGCAGCGGAGGTGCACGAT
CTTATTCGTAAACGTCTTCCAGACGTACAGATCCATGGTGCCACTACGTG
TGCTGCGCTCCTTTCAAATGCCGGCGCGGTGCCTAATGGAGTCGGAATAC
TGCTTCACGATAGTGACGGAATGGCGACGGCAGCTTGTACTCTCGAAAAT
TGTGATGCAACTGAGGCTGCAAATCGTGTGGCCGCACAGCTGAAAGGCAA
GTTGGGAGTCGTGAAAAATGTGTTGCTGTCAACTTCACCGGGTATAGAAG
AGGAAGTTTTGCAGACTTTTTCTACTGTTCTTCCAGGAGTTGCAGTATTT
GGTGGTTCTGCTGCTGACAATACAGTGACCGGAGGATGGAGCCTACATCA
TGACCAAGGTGTGTTTTCAACCGGTTTATCGGCGGTAGGTATTAAAGCTG
GAGTTCCTTTTGGATCATGCCTTCTTCCTCCTTACAAAAAAGGAGAACAG
TATGCGATTGTGACGAAATGCGCCGGGCGTGTAATTCATGAACTAGATGG
GAAGTCGGCTGGTGAGGTGCTTCGGGAATGGGTTGGCGAAGTCATCGAAA
CGCAGTCGAGAGAAGGGGGATCAGTGCTAGTTGAATGTGCATCATTTCCT
CTTGGGGTAGAAAGAGTGTCTGGTGGATGGATAGGAATTCATGCAGCACA
AATAACTGCAGAAGGGAGTGTGGGACTGTTTGCAGAGGTTAACGAAGGGG
ATAAACTAACTGTGATGCGAAAAATGGGAGGTGCTGACTCTGCAACTGCT
GCTTCGATTGGTTTGGAACACGTTTACAAAGAAGCGATGAACCAAGGAGG
ATTGACAAACCCAAAGGCGGGAATTCTGATTTATTGTGGAGGTCTTAGCA
TCGCTGTGGGTGATGAGCTAAATAAGAGTTTGGAACCCATAAAAGGAAAG
GCAGCTATGTTAGGGATGACGGCGTTCGGAGAACAGGGGCAAGTGGCTGG
TCGTAATTTGCACTCAAATCTTGCCATTGGAATGGCGTTGTTTCAGTAG
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Coding sequence (CDS) from alignment at tig00004370_pilon:242568..243716-

>Gchil8941.t1 ID=Gchil8941.t1|Name=Gchil8941.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1149bp|location=Sequence derived from alignment at tig00004370_pilon:242568..243716- (Gracilaria chilensis NLEC103_M9 male)
ATGCTATCTGTATCGGTCGGGTCTTCTGACTTAGCGTCCACTGCAGAAGC
TGTGGAGGCGGCGTTGGATGCTGCAATGTCCACGACTACATCGCCCACAG
TGGCTCTTGTTACGCATACGGTGGATCGAAGTGCAGCGGAGGTGCACGAT
CTTATTCGTAAACGTCTTCCAGACGTACAGATCCATGGTGCCACTACGTG
TGCTGCGCTCCTTTCAAATGCCGGCGCGGTGCCTAATGGAGTCGGAATAC
TGCTTCACGATAGTGACGGAATGGCGACGGCAGCTTGTACTCTCGAAAAT
TGTGATGCAACTGAGGCTGCAAATCGTGTGGCCGCACAGCTGAAAGGCAA
GTTGGGAGTCGTGAAAAATGTGTTGCTGTCAACTTCACCGGGTATAGAAG
AGGAAGTTTTGCAGACTTTTTCTACTGTTCTTCCAGGAGTTGCAGTATTT
GGTGGTTCTGCTGCTGACAATACAGTGACCGGAGGATGGAGCCTACATCA
TGACCAAGGTGTGTTTTCAACCGGTTTATCGGCGGTAGGTATTAAAGCTG
GAGTTCCTTTTGGATCATGCCTTCTTCCTCCTTACAAAAAAGGAGAACAG
TATGCGATTGTGACGAAATGCGCCGGGCGTGTAATTCATGAACTAGATGG
GAAGTCGGCTGGTGAGGTGCTTCGGGAATGGGTTGGCGAAGTCATCGAAA
CGCAGTCGAGAGAAGGGGGATCAGTGCTAGTTGAATGTGCATCATTTCCT
CTTGGGGTAGAAAGAGTGTCTGGTGGATGGATAGGAATTCATGCAGCACA
AATAACTGCAGAAGGGAGTGTGGGACTGTTTGCAGAGGTTAACGAAGGGG
ATAAACTAACTGTGATGCGAAAAATGGGAGGTGCTGACTCTGCAACTGCT
GCTTCGATTGGTTTGGAACACGTTTACAAAGAAGCGATGAACCAAGGAGG
ATTGACAAACCCAAAGGCGGGAATTCTGATTTATTGTGGAGGTCTTAGCA
TCGCTGTGGGTGATGAGCTAAATAAGAGTTTGGAACCCATAAAAGGAAAG
GCAGCTATGTTAGGGATGACGGCGTTCGGAGAACAGGGGCAAGTGGCTGG
TCGTAATTTGCACTCAAATCTTGCCATTGGAATGGCGTTGTTTCAGTAG
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