Gchil8940.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8940.t1
Unique NameGchil8940.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length444
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:238365..239878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708000.1
Preferred namePLSCR5
PFAMsScramblase
Max annot lvl2759|Eukaryota
KEGG koko:K04818
KEGG TC1.A.9.1
KEGG Pathwayko04080,map04080
GOsGO:0000981,GO:0000982,GO:0001077,GO:0001228,GO:0001300,GO:0001775,GO:0002237,GO:0002252,GO:0002376,GO:0002520,GO:0002526,GO:0002682,GO:0002684,GO:0002694,GO:0003674,GO:0003700,GO:0005102,GO:0005154,GO:0005215,GO:0005319,GO:0005488,GO:0005509,GO:0005515,GO:0005548,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005794,GO:0005829,GO:0005886,GO:0005887,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006575,GO:0006629,GO:0006644,GO:0006650,GO:0006658,GO:0006659,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006915,GO:0006950,GO:0006952,GO:0006953,GO:0006954,GO:0006955,GO:0006979,GO:0007009,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007275,GO:0007568,GO:0007569,GO:0007596,GO:0007599,GO:0008150,GO:0008152,GO:0008219,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009605,GO:0009607,GO:0009611,GO:0009615,GO:0009617,GO:0009628,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009898,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010256,GO:0010467,GO:0010468,GO:0010506,GO:0010507,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010639,GO:0010646,GO:0010647,GO:0010821,GO:0010823,GO:0010876,GO:0010911,GO:0010912,GO:0010941,GO:0010942,GO:0012501,GO:0012505,GO:0015711,GO:0015748,GO:0015914,GO:0016020,GO:0016021,GO:0016043,GO:0016070,GO:0017121,GO:0017124,GO:0017128,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019637,GO:0019899,GO:0019904,GO:0023051,GO:0023052,GO:0023056,GO:0030097,GO:0030099,GO:0030154,GO:0030168,GO:0031012,GO:0031224,GO:0031225,GO:0031226,GO:0031235,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032091,GO:0032496,GO:0032501,GO:0032502,GO:0032774,GO:0032781,GO:0033003,GO:0033036,GO:0033043,GO:0033500,GO:0033554,GO:0033993,GO:0034097,GO:0034599,GO:0034605,GO:0034641,GO:0034645,GO:0034654,GO:0035455,GO:0035456,GO:0035556,GO:0042060,GO:0042221,GO:0042398,GO:0042592,GO:0042593,GO:0042609,GO:0042632,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043462,GO:0043900,GO:0043901,GO:0043903,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044271,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045017,GO:0045069,GO:0045071,GO:0045088,GO:0045089,GO:0045121,GO:0045893,GO:0045935,GO:0045944,GO:0046474,GO:0046483,GO:0046486,GO:0046658,GO:0046872,GO:0048306,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048525,GO:0048534,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050792,GO:0050794,GO:0050817,GO:0050865,GO:0050878,GO:0050896,GO:0051098,GO:0051100,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051336,GO:0051345,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0055088,GO:0055092,GO:0060255,GO:0060368,GO:0061024,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070782,GO:0070851,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071345,GO:0071396,GO:0071702,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090407,GO:0097035,GO:0097190,GO:0097193,GO:0097194,GO:0097659,GO:0098542,GO:0098552,GO:0098562,GO:0098589,GO:0098753,GO:0098805,GO:0098857,GO:0098916,GO:0099536,GO:0099537,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1901701,GO:1902229,GO:1902231,GO:1902531,GO:1902533,GO:1902680,GO:1903146,GO:1903147,GO:1903506,GO:1903508,GO:1903900,GO:1903901,GO:2000112,GO:2000371,GO:2000373,GO:2001020,GO:2001022,GO:2001141,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Evalue1.6e-76
EggNOG OGsKOG0621@1|root,KOG0621@2759|Eukaryota
Descriptionphospholipid scrambling
COG categoryO
BRITEko00000,ko00001,ko04040
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8940Gchil8940Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 238365..239878 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8940.t1Gchil8940.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 238365..239878 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8940.t1.stop1Gchil8940.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 238365..238367 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8940.t1.CDS1Gchil8940.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 238365..238876 -
Gchil8940.t1.CDS2Gchil8940.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 238970..239489 -
Gchil8940.t1.CDS3Gchil8940.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 239579..239878 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8940.t1.exon1Gchil8940.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 238365..238876 -
Gchil8940.t1.exon2Gchil8940.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 238970..239489 -
Gchil8940.t1.exon3Gchil8940.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 239579..239878 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8940.t1.intron1Gchil8940.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 238877..238969 -
Gchil8940.t1.intron2Gchil8940.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 239490..239578 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8940.t1.start1Gchil8940.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 239876..239878 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8940.t1 ID=Gchil8940.t1|Name=Gchil8940.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=444bp
MQFTPCRPYSSVLSTPLTASRRFTELKAQSKRSLCISARSSAREPDAIQT
ASGSEIILSPPALVVTREYEWANIIIGFEQANKYTIRAAPGGQVVGYIAE
EGSFGSAVTRNLLRTRRPFKATVFDKDRNIIFQIRRPLYLISTSIFVETP
EGEVIGEVHMNWHMWRRRYNLYVDKTQFAEVDSGLLAVDFDMRDVDGSKI
ASVNKDFTGFARELFTDARQYVLRLDPSYGLEHDESLVYDAATLNAAAGE
HGAQKLAQRERAVILGAAIAIDFDYFSLHSRGPGPGIMMMPPVGAPTSAP
VPPGAGAGAGAAAAGADVGTAAGADVFSDAMNDNGPDTETPYEIRDEEIS
GDPSQVSAQSGGWEDAKPFDQDQFDDANQGNTEESQWASFEEPDHGFDDP
YADNDAWSADDDTWGAGDGGGDEEGGGVSGLFGIIKRIFFDDD*
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spliced messenger RNA

>Gchil8940.t1 ID=Gchil8940.t1|Name=Gchil8940.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1332bp|location=Sequence derived from alignment at tig00004370_pilon:238365..239878- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAATTCACTCCGTGTCGCCCATACTCTTCGGTTCTATCAACTCCATT
GACTGCAAGTAGGAGGTTTACGGAATTAAAAGCCCAATCAAAGCGATCGC
TATGTATATCCGCGCGCAGTTCAGCCCGTGAACCTGATGCAATTCAAACG
GCTTCTGGCAGTGAAATTATACTTTCCCCGCCGGCACTAGTCGTCACCCG
TGAGTACGAATGGGCTAATATTATCATTGGATTCGAACAGGCAAATAAGT
ACACGATACGAGCAGCGCCTGGAGGACAAGTAGTCGGATACATTGCAGAA
GAGGGGTCGTTTGGGAGTGCTGTCACGAGAAACTTACTTCGTACTCGACG
TCCATTTAAGGCTACGGTCTTTGACAAAGACCGGAACATCATATTTCAGA
TTCGCCGTCCGTTGTACCTTATATCCACATCAATATTCGTGGAAACTCCA
GAAGGAGAAGTGATTGGGGAAGTCCATATGAACTGGCATATGTGGAGAAG
GCGATACAATCTTTATGTGGACAAAACTCAATTTGCTGAGGTTGACTCAG
GCTTGCTTGCGGTAGACTTCGATATGCGCGATGTTGATGGAAGTAAAATA
GCATCCGTCAACAAGGATTTCACAGGATTCGCGCGCGAACTGTTTACAGA
TGCCAGACAATATGTATTGCGCCTGGATCCTTCGTATGGCTTGGAGCACG
ATGAGTCACTGGTCTATGATGCAGCCACATTGAACGCAGCTGCAGGAGAG
CACGGTGCCCAAAAGTTGGCTCAACGCGAACGCGCAGTCATCCTCGGTGC
TGCAATAGCCATCGACTTCGATTATTTCAGTCTGCACAGTCGTGGTCCAG
GTCCTGGAATAATGATGATGCCACCTGTAGGAGCGCCCACATCTGCTCCT
GTTCCTCCAGGCGCGGGAGCTGGCGCTGGCGCTGCCGCCGCTGGAGCTGA
TGTAGGTACTGCTGCTGGCGCTGACGTGTTTTCCGATGCAATGAACGACA
ATGGGCCGGACACTGAAACACCGTACGAAATTCGCGACGAGGAGATAAGC
GGAGATCCTTCACAGGTATCCGCTCAATCAGGAGGATGGGAAGATGCAAA
GCCCTTTGATCAGGACCAGTTTGACGATGCAAACCAAGGGAATACCGAAG
AGTCACAGTGGGCCTCGTTTGAAGAACCAGATCATGGTTTTGATGACCCT
TATGCCGACAACGACGCATGGAGTGCAGATGACGACACATGGGGCGCAGG
AGACGGTGGTGGAGACGAGGAAGGGGGTGGTGTAAGTGGCTTGTTCGGTA
TTATCAAGAGAATCTTTTTTGACGATGACTAG
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protein sequence of Gchil8940.t1

>Gchil8940.t1 ID=Gchil8940.t1|Name=Gchil8940.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=444bp
MQFTPCRPYSSVLSTPLTASRRFTELKAQSKRSLCISARSSAREPDAIQT
ASGSEIILSPPALVVTREYEWANIIIGFEQANKYTIRAAPGGQVVGYIAE
EGSFGSAVTRNLLRTRRPFKATVFDKDRNIIFQIRRPLYLISTSIFVETP
EGEVIGEVHMNWHMWRRRYNLYVDKTQFAEVDSGLLAVDFDMRDVDGSKI
ASVNKDFTGFARELFTDARQYVLRLDPSYGLEHDESLVYDAATLNAAAGE
HGAQKLAQRERAVILGAAIAIDFDYFSLHSRGPGPGIMMMPPVGAPTSAP
VPPGAGAGAGAAAAGADVGTAAGADVFSDAMNDNGPDTETPYEIRDEEIS
GDPSQVSAQSGGWEDAKPFDQDQFDDANQGNTEESQWASFEEPDHGFDDP
YADNDAWSADDDTWGAGDGGGDEEGGGVSGLFGIIKRIFFDDD*
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mRNA from alignment at tig00004370_pilon:238365..239878-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8940.t1 ID=Gchil8940.t1|Name=Gchil8940.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1514bp|location=Sequence derived from alignment at tig00004370_pilon:238365..239878- (Gracilaria chilensis NLEC103_M9 male)
ATGCAATTCACTCCGTGTCGCCCATACTCTTCGGTTCTATCAACTCCATT
GACTGCAAGTAGGAGGTTTACGGAATTAAAAGCCCAATCAAAGCGATCGC
TATGTATATCCGCGCGCAGTTCAGCCCGTGAACCTGATGCAATTCAAACG
GCTTCTGGCAGTGAAATTATACTTTCCCCGCCGGCACTAGTCGTCACCCG
TGAGTACGAATGGGCTAATATTATCATTGGATTCGAACAGGCAAATAAGT
ACACGATACGAGCAGCGCCTGGAGGACAAGTAGTCGGATACATTGCAGAA
GTATGTACAACTTATTTAATCACGTGAACGAGAGAGCGCTGAAGTTTTCC
ATTGTACTGATCATGTGCTAAAATCATCTTCTTGAACAGGAGGGGTCGTT
TGGGAGTGCTGTCACGAGAAACTTACTTCGTACTCGACGTCCATTTAAGG
CTACGGTCTTTGACAAAGACCGGAACATCATATTTCAGATTCGCCGTCCG
TTGTACCTTATATCCACATCAATATTCGTGGAAACTCCAGAAGGAGAAGT
GATTGGGGAAGTCCATATGAACTGGCATATGTGGAGAAGGCGATACAATC
TTTATGTGGACAAAACTCAATTTGCTGAGGTTGACTCAGGCTTGCTTGCG
GTAGACTTCGATATGCGCGATGTTGATGGAAGTAAAATAGCATCCGTCAA
CAAGGATTTCACAGGATTCGCGCGCGAACTGTTTACAGATGCCAGACAAT
ATGTATTGCGCCTGGATCCTTCGTATGGCTTGGAGCACGATGAGTCACTG
GTCTATGATGCAGCCACATTGAACGCAGCTGCAGGAGAGCACGGTGCCCA
AAAGTTGGCTCAACGCGAACGCGCAGTCATCCTCGGTGCTGCAATAGCCA
TCGACTTCGGTAAGTTTTATACTACATACATCTCCGAGGTATCCATACAC
TCAAATGAACTAACGCGTATCTGTTAATTCGTGTCGCTATCGCGTATGAT
AGATTATTTCAGTCTGCACAGTCGTGGTCCAGGTCCTGGAATAATGATGA
TGCCACCTGTAGGAGCGCCCACATCTGCTCCTGTTCCTCCAGGCGCGGGA
GCTGGCGCTGGCGCTGCCGCCGCTGGAGCTGATGTAGGTACTGCTGCTGG
CGCTGACGTGTTTTCCGATGCAATGAACGACAATGGGCCGGACACTGAAA
CACCGTACGAAATTCGCGACGAGGAGATAAGCGGAGATCCTTCACAGGTA
TCCGCTCAATCAGGAGGATGGGAAGATGCAAAGCCCTTTGATCAGGACCA
GTTTGACGATGCAAACCAAGGGAATACCGAAGAGTCACAGTGGGCCTCGT
TTGAAGAACCAGATCATGGTTTTGATGACCCTTATGCCGACAACGACGCA
TGGAGTGCAGATGACGACACATGGGGCGCAGGAGACGGTGGTGGAGACGA
GGAAGGGGGTGGTGTAAGTGGCTTGTTCGGTATTATCAAGAGAATCTTTT
TTGACGATGACTAG
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Coding sequence (CDS) from alignment at tig00004370_pilon:238365..239878-

>Gchil8940.t1 ID=Gchil8940.t1|Name=Gchil8940.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1332bp|location=Sequence derived from alignment at tig00004370_pilon:238365..239878- (Gracilaria chilensis NLEC103_M9 male)
ATGCAATTCACTCCGTGTCGCCCATACTCTTCGGTTCTATCAACTCCATT
GACTGCAAGTAGGAGGTTTACGGAATTAAAAGCCCAATCAAAGCGATCGC
TATGTATATCCGCGCGCAGTTCAGCCCGTGAACCTGATGCAATTCAAACG
GCTTCTGGCAGTGAAATTATACTTTCCCCGCCGGCACTAGTCGTCACCCG
TGAGTACGAATGGGCTAATATTATCATTGGATTCGAACAGGCAAATAAGT
ACACGATACGAGCAGCGCCTGGAGGACAAGTAGTCGGATACATTGCAGAA
GAGGGGTCGTTTGGGAGTGCTGTCACGAGAAACTTACTTCGTACTCGACG
TCCATTTAAGGCTACGGTCTTTGACAAAGACCGGAACATCATATTTCAGA
TTCGCCGTCCGTTGTACCTTATATCCACATCAATATTCGTGGAAACTCCA
GAAGGAGAAGTGATTGGGGAAGTCCATATGAACTGGCATATGTGGAGAAG
GCGATACAATCTTTATGTGGACAAAACTCAATTTGCTGAGGTTGACTCAG
GCTTGCTTGCGGTAGACTTCGATATGCGCGATGTTGATGGAAGTAAAATA
GCATCCGTCAACAAGGATTTCACAGGATTCGCGCGCGAACTGTTTACAGA
TGCCAGACAATATGTATTGCGCCTGGATCCTTCGTATGGCTTGGAGCACG
ATGAGTCACTGGTCTATGATGCAGCCACATTGAACGCAGCTGCAGGAGAG
CACGGTGCCCAAAAGTTGGCTCAACGCGAACGCGCAGTCATCCTCGGTGC
TGCAATAGCCATCGACTTCGATTATTTCAGTCTGCACAGTCGTGGTCCAG
GTCCTGGAATAATGATGATGCCACCTGTAGGAGCGCCCACATCTGCTCCT
GTTCCTCCAGGCGCGGGAGCTGGCGCTGGCGCTGCCGCCGCTGGAGCTGA
TGTAGGTACTGCTGCTGGCGCTGACGTGTTTTCCGATGCAATGAACGACA
ATGGGCCGGACACTGAAACACCGTACGAAATTCGCGACGAGGAGATAAGC
GGAGATCCTTCACAGGTATCCGCTCAATCAGGAGGATGGGAAGATGCAAA
GCCCTTTGATCAGGACCAGTTTGACGATGCAAACCAAGGGAATACCGAAG
AGTCACAGTGGGCCTCGTTTGAAGAACCAGATCATGGTTTTGATGACCCT
TATGCCGACAACGACGCATGGAGTGCAGATGACGACACATGGGGCGCAGG
AGACGGTGGTGGAGACGAGGAAGGGGGTGGTGTAAGTGGCTTGTTCGGTA
TTATCAAGAGAATCTTTTTTGACGATGACTAG
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