Gchil8933.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8933.t1
Unique NameGchil8933.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length496
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:218484..219971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707608.1
Preferred nameSRP54
PFAMsSRP54,SRP54_N,SRP_SPB
Max annot lvl2759|Eukaryota
KEGG koko:K03106
KEGG TC3.A.5.1,3.A.5.2,3.A.5.7,3.A.5.8,3.A.5.9
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005048,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005786,GO:0005829,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006617,GO:0006810,GO:0006886,GO:0008104,GO:0008144,GO:0008150,GO:0008312,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0022607,GO:0030942,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0034622,GO:0035639,GO:0036094,GO:0042221,GO:0042277,GO:0042493,GO:0042886,GO:0043021,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046907,GO:0048500,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0065003,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1990904
Evalue4.5e-210
EggNOG OGsCOG0541@1|root,KOG0780@2759|Eukaryota
EC3.6.5.4
Description7S RNA binding
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000,ko02044
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8933Gchil8933Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 218484..219971 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8933.t1.stop1Gchil8933.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 218484..218486 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8933.t1.CDS1Gchil8933.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 218484..219971 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8933.t1.exon1Gchil8933.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 218484..219971 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8933.t1.start1Gchil8933.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 219969..219971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8933.t1Gchil8933.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 218484..219971 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8933.t1 ID=Gchil8933.t1|Name=Gchil8933.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=496bp
MVLEGLGSRITGALRKMTNSTVIDEEALKEMLKEITHALLEADVNIKNVA
QLRKNVTNRVKLEELAAGVNKRKLIQKAVFDELCSMLDPGTKPAVLKRGK
PNVVMFVGLQGNGKTTSCVKYAYYHQRKGWKPGLVCADTFRAGAFDQLKQ
NATKAKVPFIGSYTETDPVKIATDGVERFKNEKCDLIIVDTSGRHKQEQA
LFAEMEQMAQALNPTDIIFVMDSSIGQAAYDQALAFKKMVSVGSVIITKL
DGHAKGGGALSAVSATQSPITFIGTGEHMDEFEPFDTQAFVGRLLGMGDV
SGLVNTIKEAGLHENVEMYKRITEGVFTLRDMYDQLESISKLGPLNKVMG
MIPGMSEIMKNTNGVDGSVRIKRFQHIMDSMTMEEMENPKVNFNASRKER
IARGSGRHPQEVEELLIEYKRFSKVVGKVGKMSKKNMNIDQLSRNTSQTF
QQFMDPRMMAQLGGQGGMQSMMKQLAKSMDGKGGLGALAGLKGLK*
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spliced messenger RNA

>Gchil8933.t1 ID=Gchil8933.t1|Name=Gchil8933.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1488bp|location=Sequence derived from alignment at tig00004370_pilon:218484..219971- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTTGGAAGGGTTGGGCAGCCGGATTACCGGCGCTCTTCGCAAGAT
GACCAACTCAACCGTCATCGACGAAGAGGCACTTAAGGAAATGCTTAAAG
AGATAACACATGCACTCCTCGAAGCCGATGTAAATATCAAAAATGTTGCC
CAGCTGCGGAAGAATGTAACAAATCGCGTAAAGCTTGAAGAGCTTGCGGC
AGGTGTCAATAAGCGAAAACTTATCCAAAAGGCTGTTTTTGATGAGCTTT
GTTCGATGCTTGATCCCGGGACAAAACCTGCTGTCCTCAAGCGCGGAAAG
CCCAATGTTGTCATGTTTGTGGGTCTACAAGGTAATGGGAAGACCACTTC
ATGTGTTAAGTATGCGTATTATCACCAGAGAAAAGGTTGGAAACCCGGAC
TGGTCTGTGCTGATACTTTTCGTGCGGGTGCATTTGACCAGCTCAAACAG
AACGCCACAAAAGCAAAGGTTCCCTTTATTGGTTCTTACACCGAAACCGA
TCCCGTCAAAATCGCCACAGACGGTGTTGAGAGATTCAAAAACGAAAAGT
GCGATTTAATAATCGTCGATACTTCAGGTCGACACAAACAGGAACAGGCG
TTATTCGCTGAAATGGAACAAATGGCACAAGCATTGAATCCTACAGACAT
TATCTTTGTTATGGATTCGTCCATTGGCCAGGCAGCCTACGACCAAGCTC
TCGCCTTTAAGAAAATGGTGAGTGTTGGTTCAGTTATCATTACAAAATTA
GATGGACACGCGAAAGGTGGTGGCGCTCTTTCTGCTGTCTCGGCTACTCA
ATCTCCCATTACTTTTATCGGCACTGGTGAACATATGGACGAATTCGAAC
CCTTTGATACGCAAGCTTTTGTCGGTAGGCTGCTTGGTATGGGTGACGTC
TCGGGATTGGTGAATACCATCAAGGAGGCTGGCCTTCATGAGAATGTTGA
AATGTACAAGCGAATAACAGAGGGTGTCTTCACCTTGCGTGACATGTACG
ACCAATTGGAGTCTATTTCAAAACTTGGTCCTCTGAACAAGGTCATGGGA
ATGATTCCCGGCATGTCTGAGATCATGAAAAACACAAACGGCGTTGACGG
ATCTGTACGGATAAAGCGTTTTCAGCACATTATGGATTCAATGACCATGG
AAGAGATGGAGAACCCAAAGGTGAATTTCAATGCCAGTAGAAAAGAGCGG
ATAGCGAGAGGGAGTGGAAGGCATCCACAAGAAGTTGAAGAACTCCTCAT
TGAGTACAAGCGCTTTTCAAAGGTCGTTGGAAAGGTGGGTAAAATGTCAA
AGAAGAATATGAATATTGACCAACTTTCGAGGAACACATCCCAAACATTC
CAGCAATTCATGGATCCTAGAATGATGGCACAGTTGGGTGGTCAAGGAGG
AATGCAGTCCATGATGAAGCAGCTGGCAAAGTCAATGGATGGGAAAGGCG
GTTTGGGTGCACTTGCTGGGCTGAAAGGGCTAAAATAG
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protein sequence of Gchil8933.t1

>Gchil8933.t1 ID=Gchil8933.t1|Name=Gchil8933.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=496bp
MVLEGLGSRITGALRKMTNSTVIDEEALKEMLKEITHALLEADVNIKNVA
QLRKNVTNRVKLEELAAGVNKRKLIQKAVFDELCSMLDPGTKPAVLKRGK
PNVVMFVGLQGNGKTTSCVKYAYYHQRKGWKPGLVCADTFRAGAFDQLKQ
NATKAKVPFIGSYTETDPVKIATDGVERFKNEKCDLIIVDTSGRHKQEQA
LFAEMEQMAQALNPTDIIFVMDSSIGQAAYDQALAFKKMVSVGSVIITKL
DGHAKGGGALSAVSATQSPITFIGTGEHMDEFEPFDTQAFVGRLLGMGDV
SGLVNTIKEAGLHENVEMYKRITEGVFTLRDMYDQLESISKLGPLNKVMG
MIPGMSEIMKNTNGVDGSVRIKRFQHIMDSMTMEEMENPKVNFNASRKER
IARGSGRHPQEVEELLIEYKRFSKVVGKVGKMSKKNMNIDQLSRNTSQTF
QQFMDPRMMAQLGGQGGMQSMMKQLAKSMDGKGGLGALAGLKGLK*
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mRNA from alignment at tig00004370_pilon:218484..219971-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8933.t1 ID=Gchil8933.t1|Name=Gchil8933.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1488bp|location=Sequence derived from alignment at tig00004370_pilon:218484..219971- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGTTGGAAGGGTTGGGCAGCCGGATTACCGGCGCTCTTCGCAAGAT
GACCAACTCAACCGTCATCGACGAAGAGGCACTTAAGGAAATGCTTAAAG
AGATAACACATGCACTCCTCGAAGCCGATGTAAATATCAAAAATGTTGCC
CAGCTGCGGAAGAATGTAACAAATCGCGTAAAGCTTGAAGAGCTTGCGGC
AGGTGTCAATAAGCGAAAACTTATCCAAAAGGCTGTTTTTGATGAGCTTT
GTTCGATGCTTGATCCCGGGACAAAACCTGCTGTCCTCAAGCGCGGAAAG
CCCAATGTTGTCATGTTTGTGGGTCTACAAGGTAATGGGAAGACCACTTC
ATGTGTTAAGTATGCGTATTATCACCAGAGAAAAGGTTGGAAACCCGGAC
TGGTCTGTGCTGATACTTTTCGTGCGGGTGCATTTGACCAGCTCAAACAG
AACGCCACAAAAGCAAAGGTTCCCTTTATTGGTTCTTACACCGAAACCGA
TCCCGTCAAAATCGCCACAGACGGTGTTGAGAGATTCAAAAACGAAAAGT
GCGATTTAATAATCGTCGATACTTCAGGTCGACACAAACAGGAACAGGCG
TTATTCGCTGAAATGGAACAAATGGCACAAGCATTGAATCCTACAGACAT
TATCTTTGTTATGGATTCGTCCATTGGCCAGGCAGCCTACGACCAAGCTC
TCGCCTTTAAGAAAATGGTGAGTGTTGGTTCAGTTATCATTACAAAATTA
GATGGACACGCGAAAGGTGGTGGCGCTCTTTCTGCTGTCTCGGCTACTCA
ATCTCCCATTACTTTTATCGGCACTGGTGAACATATGGACGAATTCGAAC
CCTTTGATACGCAAGCTTTTGTCGGTAGGCTGCTTGGTATGGGTGACGTC
TCGGGATTGGTGAATACCATCAAGGAGGCTGGCCTTCATGAGAATGTTGA
AATGTACAAGCGAATAACAGAGGGTGTCTTCACCTTGCGTGACATGTACG
ACCAATTGGAGTCTATTTCAAAACTTGGTCCTCTGAACAAGGTCATGGGA
ATGATTCCCGGCATGTCTGAGATCATGAAAAACACAAACGGCGTTGACGG
ATCTGTACGGATAAAGCGTTTTCAGCACATTATGGATTCAATGACCATGG
AAGAGATGGAGAACCCAAAGGTGAATTTCAATGCCAGTAGAAAAGAGCGG
ATAGCGAGAGGGAGTGGAAGGCATCCACAAGAAGTTGAAGAACTCCTCAT
TGAGTACAAGCGCTTTTCAAAGGTCGTTGGAAAGGTGGGTAAAATGTCAA
AGAAGAATATGAATATTGACCAACTTTCGAGGAACACATCCCAAACATTC
CAGCAATTCATGGATCCTAGAATGATGGCACAGTTGGGTGGTCAAGGAGG
AATGCAGTCCATGATGAAGCAGCTGGCAAAGTCAATGGATGGGAAAGGCG
GTTTGGGTGCACTTGCTGGGCTGAAAGGGCTAAAATAG
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Coding sequence (CDS) from alignment at tig00004370_pilon:218484..219971-

>Gchil8933.t1 ID=Gchil8933.t1|Name=Gchil8933.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1488bp|location=Sequence derived from alignment at tig00004370_pilon:218484..219971- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGTTGGAAGGGTTGGGCAGCCGGATTACCGGCGCTCTTCGCAAGAT
GACCAACTCAACCGTCATCGACGAAGAGGCACTTAAGGAAATGCTTAAAG
AGATAACACATGCACTCCTCGAAGCCGATGTAAATATCAAAAATGTTGCC
CAGCTGCGGAAGAATGTAACAAATCGCGTAAAGCTTGAAGAGCTTGCGGC
AGGTGTCAATAAGCGAAAACTTATCCAAAAGGCTGTTTTTGATGAGCTTT
GTTCGATGCTTGATCCCGGGACAAAACCTGCTGTCCTCAAGCGCGGAAAG
CCCAATGTTGTCATGTTTGTGGGTCTACAAGGTAATGGGAAGACCACTTC
ATGTGTTAAGTATGCGTATTATCACCAGAGAAAAGGTTGGAAACCCGGAC
TGGTCTGTGCTGATACTTTTCGTGCGGGTGCATTTGACCAGCTCAAACAG
AACGCCACAAAAGCAAAGGTTCCCTTTATTGGTTCTTACACCGAAACCGA
TCCCGTCAAAATCGCCACAGACGGTGTTGAGAGATTCAAAAACGAAAAGT
GCGATTTAATAATCGTCGATACTTCAGGTCGACACAAACAGGAACAGGCG
TTATTCGCTGAAATGGAACAAATGGCACAAGCATTGAATCCTACAGACAT
TATCTTTGTTATGGATTCGTCCATTGGCCAGGCAGCCTACGACCAAGCTC
TCGCCTTTAAGAAAATGGTGAGTGTTGGTTCAGTTATCATTACAAAATTA
GATGGACACGCGAAAGGTGGTGGCGCTCTTTCTGCTGTCTCGGCTACTCA
ATCTCCCATTACTTTTATCGGCACTGGTGAACATATGGACGAATTCGAAC
CCTTTGATACGCAAGCTTTTGTCGGTAGGCTGCTTGGTATGGGTGACGTC
TCGGGATTGGTGAATACCATCAAGGAGGCTGGCCTTCATGAGAATGTTGA
AATGTACAAGCGAATAACAGAGGGTGTCTTCACCTTGCGTGACATGTACG
ACCAATTGGAGTCTATTTCAAAACTTGGTCCTCTGAACAAGGTCATGGGA
ATGATTCCCGGCATGTCTGAGATCATGAAAAACACAAACGGCGTTGACGG
ATCTGTACGGATAAAGCGTTTTCAGCACATTATGGATTCAATGACCATGG
AAGAGATGGAGAACCCAAAGGTGAATTTCAATGCCAGTAGAAAAGAGCGG
ATAGCGAGAGGGAGTGGAAGGCATCCACAAGAAGTTGAAGAACTCCTCAT
TGAGTACAAGCGCTTTTCAAAGGTCGTTGGAAAGGTGGGTAAAATGTCAA
AGAAGAATATGAATATTGACCAACTTTCGAGGAACACATCCCAAACATTC
CAGCAATTCATGGATCCTAGAATGATGGCACAGTTGGGTGGTCAAGGAGG
AATGCAGTCCATGATGAAGCAGCTGGCAAAGTCAATGGATGGGAAAGGCG
GTTTGGGTGCACTTGCTGGGCTGAAAGGGCTAAAATAG
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