Gchil8930.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8930.t1
Unique NameGchil8930.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length190
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:208681..209250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708666.1
PFAMsCBS
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009651,GO:0009987,GO:0019725,GO:0042592,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0050897,GO:0065007,GO:0065008
Evalue5.36e-45
EggNOG OGsCOG0517@1|root,2QQ7J@2759|Eukaryota
DescriptionDomain in cystathionine beta-synthase and other proteins.
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8930Gchil8930Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 208681..209250 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8930.t1.stop1Gchil8930.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 208681..208683 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8930.t1.CDS1Gchil8930.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 208681..209250 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8930.t1.exon1Gchil8930.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 208681..209250 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8930.t1.start1Gchil8930.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 209248..209250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8930.t1Gchil8930.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 208681..209250 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8930.t1 ID=Gchil8930.t1|Name=Gchil8930.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=190bp
MALLRRSATLFRTLAYQNLRPLTSPTSTETSSEQSHSERSLGTVRDVLKT
KGEKFFYTFGDALVYDAVKEMVKHNIGSLIIVEGFNKKPVGIVTETDYLN
KVIVRGRSSKSTLVRDIMSTKEFTFVNPDATLSHCMELMTGRRIRHIPVV
EEDTNKVLGMVSIGDIVSELVAAHKRDAEHMRSFISGSY*
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spliced messenger RNA

>Gchil8930.t1 ID=Gchil8930.t1|Name=Gchil8930.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00004370_pilon:208681..209250- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACTTCTTCGTCGCTCTGCCACTCTCTTCCGCACACTTGCCTATCA
AAACCTCCGTCCTCTCACCTCACCCACATCCACGGAAACATCCTCAGAGC
AATCCCATTCCGAACGATCGCTCGGGACTGTTAGGGACGTATTGAAAACA
AAAGGTGAAAAGTTCTTTTACACTTTTGGAGATGCTCTTGTGTACGACGC
CGTCAAGGAGATGGTCAAACATAACATTGGTTCTCTTATCATCGTAGAAG
GTTTCAATAAGAAACCGGTTGGAATAGTCACGGAGACTGATTATCTGAAC
AAGGTGATTGTCCGAGGACGTTCAAGTAAATCTACTCTTGTACGTGATAT
TATGAGTACAAAGGAGTTCACATTTGTCAACCCCGACGCCACTTTGTCGC
ACTGCATGGAACTTATGACTGGGAGACGTATTCGACATATCCCCGTCGTG
GAGGAGGATACGAACAAGGTGCTCGGAATGGTTTCCATTGGAGATATTGT
CAGTGAGTTGGTAGCCGCTCACAAGAGAGATGCGGAACACATGAGGTCGT
TCATATCAGGTTCTTATTAG
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protein sequence of Gchil8930.t1

>Gchil8930.t1 ID=Gchil8930.t1|Name=Gchil8930.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=190bp
MALLRRSATLFRTLAYQNLRPLTSPTSTETSSEQSHSERSLGTVRDVLKT
KGEKFFYTFGDALVYDAVKEMVKHNIGSLIIVEGFNKKPVGIVTETDYLN
KVIVRGRSSKSTLVRDIMSTKEFTFVNPDATLSHCMELMTGRRIRHIPVV
EEDTNKVLGMVSIGDIVSELVAAHKRDAEHMRSFISGSY*
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mRNA from alignment at tig00004370_pilon:208681..209250-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8930.t1 ID=Gchil8930.t1|Name=Gchil8930.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00004370_pilon:208681..209250- (Gracilaria chilensis NLEC103_M9 male)
ATGGCACTTCTTCGTCGCTCTGCCACTCTCTTCCGCACACTTGCCTATCA
AAACCTCCGTCCTCTCACCTCACCCACATCCACGGAAACATCCTCAGAGC
AATCCCATTCCGAACGATCGCTCGGGACTGTTAGGGACGTATTGAAAACA
AAAGGTGAAAAGTTCTTTTACACTTTTGGAGATGCTCTTGTGTACGACGC
CGTCAAGGAGATGGTCAAACATAACATTGGTTCTCTTATCATCGTAGAAG
GTTTCAATAAGAAACCGGTTGGAATAGTCACGGAGACTGATTATCTGAAC
AAGGTGATTGTCCGAGGACGTTCAAGTAAATCTACTCTTGTACGTGATAT
TATGAGTACAAAGGAGTTCACATTTGTCAACCCCGACGCCACTTTGTCGC
ACTGCATGGAACTTATGACTGGGAGACGTATTCGACATATCCCCGTCGTG
GAGGAGGATACGAACAAGGTGCTCGGAATGGTTTCCATTGGAGATATTGT
CAGTGAGTTGGTAGCCGCTCACAAGAGAGATGCGGAACACATGAGGTCGT
TCATATCAGGTTCTTATTAG
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Coding sequence (CDS) from alignment at tig00004370_pilon:208681..209250-

>Gchil8930.t1 ID=Gchil8930.t1|Name=Gchil8930.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=570bp|location=Sequence derived from alignment at tig00004370_pilon:208681..209250- (Gracilaria chilensis NLEC103_M9 male)
ATGGCACTTCTTCGTCGCTCTGCCACTCTCTTCCGCACACTTGCCTATCA
AAACCTCCGTCCTCTCACCTCACCCACATCCACGGAAACATCCTCAGAGC
AATCCCATTCCGAACGATCGCTCGGGACTGTTAGGGACGTATTGAAAACA
AAAGGTGAAAAGTTCTTTTACACTTTTGGAGATGCTCTTGTGTACGACGC
CGTCAAGGAGATGGTCAAACATAACATTGGTTCTCTTATCATCGTAGAAG
GTTTCAATAAGAAACCGGTTGGAATAGTCACGGAGACTGATTATCTGAAC
AAGGTGATTGTCCGAGGACGTTCAAGTAAATCTACTCTTGTACGTGATAT
TATGAGTACAAAGGAGTTCACATTTGTCAACCCCGACGCCACTTTGTCGC
ACTGCATGGAACTTATGACTGGGAGACGTATTCGACATATCCCCGTCGTG
GAGGAGGATACGAACAAGGTGCTCGGAATGGTTTCCATTGGAGATATTGT
CAGTGAGTTGGTAGCCGCTCACAAGAGAGATGCGGAACACATGAGGTCGT
TCATATCAGGTTCTTATTAG
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