Gchil8925.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8925.t1
Unique Name	Gchil8925.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	600

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:149347..151146 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	34740.HMEL011405-PA
Preferred name	PRIM2
PFAMs	DNA_primase_lrg
Max annot lvl	33208\|Metazoa
KEGG rclass	RC02795
KEGG ko	ko:K02685
KEGG Reaction	R00375,R00376,R00377,R00378
KEGG Pathway	ko00230,ko00240,ko01100,ko03030,map00230,map00240,map01100,map03030
KEGG Module	M00261
GOs	GO:0000082,GO:0000228,GO:0000278,GO:0000428,GO:0000723,GO:0001654,GO:0001745,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0003887,GO:0003896,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005658,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009653,GO:0009887,GO:0009987,GO:0016043,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019725,GO:0022402,GO:0030880,GO:0030894,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0032993,GO:0033260,GO:0034061,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043601,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0046483,GO:0048513,GO:0048592,GO:0048731,GO:0048749,GO:0048856,GO:0051276,GO:0055029,GO:0060249,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090596,GO:0097159,GO:0097747,GO:0140097,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1903047,GO:1990234
Evalue	9.69e-74
EggNOG OGs	COG2219@1\|root,KOG2267@2759\|Eukaryota,38FWH@33154\|Opisthokonta,3BFMC@33208\|Metazoa,3CRN7@33213\|Bilateria,41WUJ@6656\|Arthropoda,3SH7S@50557\|Insecta,443VZ@7088\|Lepidoptera
Description	DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication
COG category	L
BRITE	ko00000,ko00001,ko00002,ko01000,ko03032

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8925	Gchil8925	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 149347..151146 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8925.t1.stop1	Gchil8925.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 149347..149349 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8925.t1.CDS1	Gchil8925.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 149347..151146 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8925.t1.exon1	Gchil8925.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 149347..151146 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8925.t1.start1	Gchil8925.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 151144..151146 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8925.t1	Gchil8925.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 149347..151146 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:149347..151146-
coding sequence from alignment at tig00004370_pilon:149347..151146-

mRNA sequence

>Gchil8925.t1 ID=Gchil8925.t1|Name=Gchil8925.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=600bp
MEVILAPTNASPDSGGTASLNQSSSYAPLYTSSSLGSVPFDFEKLHTLSI
RRLKLLKAVEKARAVQQLGAQSLTNGKDYLKSQIRRAERTHDLHIPPVGN
RDRREKILNDEASHFLVRMALCSEQRAWLLNTEYDLFTARLDGTATDLAL
KAIEKANGLVAKRVSNAELEQICSELRAVAQGPNRIRSNENPKYYKIAFE
EVPALVRHRKVFLRDGFAYVPESNILDVVAVQFRSLLSASLITATNCVAI
VKRDERMEPILKSIKQHFEADEQSKRAFNPNSSVDRISLQELDQSLPAMP
LCMFNMMIKLRQNHHLRHSARIQLGVFLKACGLTMEESLKFWRTEFGKGT
ITTEKFEKQYAYNIRHQYGKEGKRRNLPAFNCMKVINDRPGPGEHSGCPY
RELDESHLKMSLTALGTAPEAIPAIAARAKDGNYQAACGMCFASSQPGHH
PNSEYGLPVFIPDHPNSYFIEARRRRLGLTPEDPSMDDEVDDEELLMATE
AIDAQHVAEEFIPKVSVGDDERSEDPQPQGHRKTEDPCDKKKVDNDVNVT
VARQEDPVPKENSKDCDDRENQRSEPMDLDAPQRDQEAGGDPKVQAGSV*

spliced messenger RNA

>Gchil8925.t1 ID=Gchil8925.t1|Name=Gchil8925.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1800bp|location=Sequence derived from alignment at tig00004370_pilon:149347..151146- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGTCATACTTGCCCCCACAAACGCATCCCCGGATTCAGGGGGTAC
TGCTTCACTAAACCAAAGCTCTTCTTATGCACCGTTGTACACCTCCTCTT
CACTTGGATCAGTTCCGTTCGACTTTGAGAAGCTACACACCCTCTCCATA
AGGAGACTCAAGTTGTTGAAAGCGGTTGAAAAAGCCCGTGCAGTGCAGCA
ATTAGGAGCGCAGAGCCTAACAAACGGAAAAGACTATCTGAAGAGCCAAA
TTCGACGCGCCGAACGTACACATGATCTACACATACCGCCCGTTGGCAAT
CGGGACAGACGGGAGAAGATTCTAAACGACGAAGCGTCTCATTTTTTGGT
CAGAATGGCTCTTTGTTCCGAGCAGCGAGCTTGGCTATTGAATACCGAGT
ATGACCTTTTCACAGCACGCCTTGATGGTACAGCTACGGACTTGGCGCTC
AAGGCCATTGAGAAAGCGAACGGCTTAGTCGCGAAACGTGTTTCAAACGC
CGAACTGGAGCAGATATGTTCGGAACTTCGTGCGGTGGCTCAAGGGCCTA
ACAGAATAAGAAGCAATGAAAACCCAAAGTACTACAAGATTGCCTTCGAG
GAAGTGCCAGCTTTAGTGCGTCACCGAAAGGTTTTCTTGCGCGATGGTTT
TGCATACGTGCCTGAAAGTAACATACTTGATGTTGTTGCTGTCCAGTTTC
GATCGTTGCTCAGTGCTAGTTTAATAACAGCCACGAATTGTGTTGCAATT
GTCAAGAGAGACGAAAGAATGGAACCGATTCTCAAGTCAATTAAGCAGCA
TTTCGAGGCCGACGAACAATCCAAAAGGGCTTTTAATCCAAATTCATCTG
TCGACCGTATTTCGCTTCAGGAACTTGATCAATCGCTTCCAGCTATGCCC
CTGTGCATGTTTAATATGATGATAAAATTACGGCAGAACCATCATCTTCG
TCATTCTGCTAGAATACAGCTTGGAGTGTTTTTGAAGGCGTGCGGGTTAA
CTATGGAGGAGTCTCTTAAGTTTTGGAGAACAGAATTTGGAAAGGGAACC
ATAACAACCGAAAAGTTTGAAAAGCAATACGCATACAACATTCGCCACCA
ATACGGGAAAGAAGGTAAGCGCCGGAATCTACCTGCCTTCAACTGCATGA
AAGTAATAAATGACAGGCCAGGACCTGGAGAACATAGCGGATGTCCGTAT
CGAGAGCTTGATGAATCCCACCTCAAGATGTCCCTAACGGCGCTCGGTAC
TGCCCCAGAAGCAATTCCGGCGATTGCTGCAAGGGCCAAGGATGGTAACT
ATCAGGCGGCCTGTGGGATGTGCTTTGCATCCTCTCAACCAGGTCATCAT
CCAAATAGCGAGTATGGCCTTCCTGTATTTATTCCGGATCATCCTAACTC
GTACTTTATCGAGGCTAGACGGAGGCGTTTGGGACTCACTCCGGAAGACC
CATCCATGGATGATGAGGTAGATGATGAGGAATTATTGATGGCTACCGAA
GCAATAGACGCGCAGCATGTGGCGGAAGAATTTATCCCGAAAGTAAGCGT
GGGGGATGACGAAAGAAGTGAAGATCCTCAACCTCAAGGCCATCGAAAAA
CAGAGGATCCATGTGATAAGAAAAAAGTGGACAACGACGTAAATGTTACG
GTCGCCAGACAAGAAGATCCTGTTCCGAAGGAAAATAGTAAGGACTGCGA
TGATCGAGAGAACCAAAGGAGCGAGCCGATGGATTTAGATGCCCCACAGA
GGGATCAGGAAGCAGGGGGCGATCCAAAGGTTCAGGCAGGCAGCGTGTAA

protein sequence of Gchil8925.t1

>Gchil8925.t1 ID=Gchil8925.t1|Name=Gchil8925.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=600bp
MEVILAPTNASPDSGGTASLNQSSSYAPLYTSSSLGSVPFDFEKLHTLSI
RRLKLLKAVEKARAVQQLGAQSLTNGKDYLKSQIRRAERTHDLHIPPVGN
RDRREKILNDEASHFLVRMALCSEQRAWLLNTEYDLFTARLDGTATDLAL
KAIEKANGLVAKRVSNAELEQICSELRAVAQGPNRIRSNENPKYYKIAFE
EVPALVRHRKVFLRDGFAYVPESNILDVVAVQFRSLLSASLITATNCVAI
VKRDERMEPILKSIKQHFEADEQSKRAFNPNSSVDRISLQELDQSLPAMP
LCMFNMMIKLRQNHHLRHSARIQLGVFLKACGLTMEESLKFWRTEFGKGT
ITTEKFEKQYAYNIRHQYGKEGKRRNLPAFNCMKVINDRPGPGEHSGCPY
RELDESHLKMSLTALGTAPEAIPAIAARAKDGNYQAACGMCFASSQPGHH
PNSEYGLPVFIPDHPNSYFIEARRRRLGLTPEDPSMDDEVDDEELLMATE
AIDAQHVAEEFIPKVSVGDDERSEDPQPQGHRKTEDPCDKKKVDNDVNVT
VARQEDPVPKENSKDCDDRENQRSEPMDLDAPQRDQEAGGDPKVQAGSV*

mRNA from alignment at tig00004370_pilon:149347..151146-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8925.t1 ID=Gchil8925.t1|Name=Gchil8925.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1800bp|location=Sequence derived from alignment at tig00004370_pilon:149347..151146- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGTCATACTTGCCCCCACAAACGCATCCCCGGATTCAGGGGGTAC
TGCTTCACTAAACCAAAGCTCTTCTTATGCACCGTTGTACACCTCCTCTT
CACTTGGATCAGTTCCGTTCGACTTTGAGAAGCTACACACCCTCTCCATA
AGGAGACTCAAGTTGTTGAAAGCGGTTGAAAAAGCCCGTGCAGTGCAGCA
ATTAGGAGCGCAGAGCCTAACAAACGGAAAAGACTATCTGAAGAGCCAAA
TTCGACGCGCCGAACGTACACATGATCTACACATACCGCCCGTTGGCAAT
CGGGACAGACGGGAGAAGATTCTAAACGACGAAGCGTCTCATTTTTTGGT
CAGAATGGCTCTTTGTTCCGAGCAGCGAGCTTGGCTATTGAATACCGAGT
ATGACCTTTTCACAGCACGCCTTGATGGTACAGCTACGGACTTGGCGCTC
AAGGCCATTGAGAAAGCGAACGGCTTAGTCGCGAAACGTGTTTCAAACGC
CGAACTGGAGCAGATATGTTCGGAACTTCGTGCGGTGGCTCAAGGGCCTA
ACAGAATAAGAAGCAATGAAAACCCAAAGTACTACAAGATTGCCTTCGAG
GAAGTGCCAGCTTTAGTGCGTCACCGAAAGGTTTTCTTGCGCGATGGTTT
TGCATACGTGCCTGAAAGTAACATACTTGATGTTGTTGCTGTCCAGTTTC
GATCGTTGCTCAGTGCTAGTTTAATAACAGCCACGAATTGTGTTGCAATT
GTCAAGAGAGACGAAAGAATGGAACCGATTCTCAAGTCAATTAAGCAGCA
TTTCGAGGCCGACGAACAATCCAAAAGGGCTTTTAATCCAAATTCATCTG
TCGACCGTATTTCGCTTCAGGAACTTGATCAATCGCTTCCAGCTATGCCC
CTGTGCATGTTTAATATGATGATAAAATTACGGCAGAACCATCATCTTCG
TCATTCTGCTAGAATACAGCTTGGAGTGTTTTTGAAGGCGTGCGGGTTAA
CTATGGAGGAGTCTCTTAAGTTTTGGAGAACAGAATTTGGAAAGGGAACC
ATAACAACCGAAAAGTTTGAAAAGCAATACGCATACAACATTCGCCACCA
ATACGGGAAAGAAGGTAAGCGCCGGAATCTACCTGCCTTCAACTGCATGA
AAGTAATAAATGACAGGCCAGGACCTGGAGAACATAGCGGATGTCCGTAT
CGAGAGCTTGATGAATCCCACCTCAAGATGTCCCTAACGGCGCTCGGTAC
TGCCCCAGAAGCAATTCCGGCGATTGCTGCAAGGGCCAAGGATGGTAACT
ATCAGGCGGCCTGTGGGATGTGCTTTGCATCCTCTCAACCAGGTCATCAT
CCAAATAGCGAGTATGGCCTTCCTGTATTTATTCCGGATCATCCTAACTC
GTACTTTATCGAGGCTAGACGGAGGCGTTTGGGACTCACTCCGGAAGACC
CATCCATGGATGATGAGGTAGATGATGAGGAATTATTGATGGCTACCGAA
GCAATAGACGCGCAGCATGTGGCGGAAGAATTTATCCCGAAAGTAAGCGT
GGGGGATGACGAAAGAAGTGAAGATCCTCAACCTCAAGGCCATCGAAAAA
CAGAGGATCCATGTGATAAGAAAAAAGTGGACAACGACGTAAATGTTACG
GTCGCCAGACAAGAAGATCCTGTTCCGAAGGAAAATAGTAAGGACTGCGA
TGATCGAGAGAACCAAAGGAGCGAGCCGATGGATTTAGATGCCCCACAGA
GGGATCAGGAAGCAGGGGGCGATCCAAAGGTTCAGGCAGGCAGCGTGTAA

Coding sequence (CDS) from alignment at tig00004370_pilon:149347..151146-

>Gchil8925.t1 ID=Gchil8925.t1|Name=Gchil8925.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1800bp|location=Sequence derived from alignment at tig00004370_pilon:149347..151146- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGTCATACTTGCCCCCACAAACGCATCCCCGGATTCAGGGGGTAC
TGCTTCACTAAACCAAAGCTCTTCTTATGCACCGTTGTACACCTCCTCTT
CACTTGGATCAGTTCCGTTCGACTTTGAGAAGCTACACACCCTCTCCATA
AGGAGACTCAAGTTGTTGAAAGCGGTTGAAAAAGCCCGTGCAGTGCAGCA
ATTAGGAGCGCAGAGCCTAACAAACGGAAAAGACTATCTGAAGAGCCAAA
TTCGACGCGCCGAACGTACACATGATCTACACATACCGCCCGTTGGCAAT
CGGGACAGACGGGAGAAGATTCTAAACGACGAAGCGTCTCATTTTTTGGT
CAGAATGGCTCTTTGTTCCGAGCAGCGAGCTTGGCTATTGAATACCGAGT
ATGACCTTTTCACAGCACGCCTTGATGGTACAGCTACGGACTTGGCGCTC
AAGGCCATTGAGAAAGCGAACGGCTTAGTCGCGAAACGTGTTTCAAACGC
CGAACTGGAGCAGATATGTTCGGAACTTCGTGCGGTGGCTCAAGGGCCTA
ACAGAATAAGAAGCAATGAAAACCCAAAGTACTACAAGATTGCCTTCGAG
GAAGTGCCAGCTTTAGTGCGTCACCGAAAGGTTTTCTTGCGCGATGGTTT
TGCATACGTGCCTGAAAGTAACATACTTGATGTTGTTGCTGTCCAGTTTC
GATCGTTGCTCAGTGCTAGTTTAATAACAGCCACGAATTGTGTTGCAATT
GTCAAGAGAGACGAAAGAATGGAACCGATTCTCAAGTCAATTAAGCAGCA
TTTCGAGGCCGACGAACAATCCAAAAGGGCTTTTAATCCAAATTCATCTG
TCGACCGTATTTCGCTTCAGGAACTTGATCAATCGCTTCCAGCTATGCCC
CTGTGCATGTTTAATATGATGATAAAATTACGGCAGAACCATCATCTTCG
TCATTCTGCTAGAATACAGCTTGGAGTGTTTTTGAAGGCGTGCGGGTTAA
CTATGGAGGAGTCTCTTAAGTTTTGGAGAACAGAATTTGGAAAGGGAACC
ATAACAACCGAAAAGTTTGAAAAGCAATACGCATACAACATTCGCCACCA
ATACGGGAAAGAAGGTAAGCGCCGGAATCTACCTGCCTTCAACTGCATGA
AAGTAATAAATGACAGGCCAGGACCTGGAGAACATAGCGGATGTCCGTAT
CGAGAGCTTGATGAATCCCACCTCAAGATGTCCCTAACGGCGCTCGGTAC
TGCCCCAGAAGCAATTCCGGCGATTGCTGCAAGGGCCAAGGATGGTAACT
ATCAGGCGGCCTGTGGGATGTGCTTTGCATCCTCTCAACCAGGTCATCAT
CCAAATAGCGAGTATGGCCTTCCTGTATTTATTCCGGATCATCCTAACTC
GTACTTTATCGAGGCTAGACGGAGGCGTTTGGGACTCACTCCGGAAGACC
CATCCATGGATGATGAGGTAGATGATGAGGAATTATTGATGGCTACCGAA
GCAATAGACGCGCAGCATGTGGCGGAAGAATTTATCCCGAAAGTAAGCGT
GGGGGATGACGAAAGAAGTGAAGATCCTCAACCTCAAGGCCATCGAAAAA
CAGAGGATCCATGTGATAAGAAAAAAGTGGACAACGACGTAAATGTTACG
GTCGCCAGACAAGAAGATCCTGTTCCGAAGGAAAATAGTAAGGACTGCGA
TGATCGAGAGAACCAAAGGAGCGAGCCGATGGATTTAGATGCCCCACAGA
GGGATCAGGAAGCAGGGGGCGATCCAAAGGTTCAGGCAGGCAGCGTGTAA