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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005703598.1 |
| Preferred name | PRT1 |
| PFAMs | RRM_1,eIF2A |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K03253 |
| KEGG Pathway | ko03013,map03013 |
| GOs | GO:0000003,GO:0002064,GO:0002065,GO:0002066,GO:0002181,GO:0002183,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0007276,GO:0007281,GO:0007292,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009277,GO:0009847,GO:0009888,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010608,GO:0016032,GO:0016282,GO:0019080,GO:0019081,GO:0019222,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030312,GO:0030707,GO:0030855,GO:0031323,GO:0031326,GO:0032268,GO:0032501,GO:0032502,GO:0032504,GO:0032947,GO:0032991,GO:0033290,GO:0034248,GO:0034641,GO:0034645,GO:0035690,GO:0035770,GO:0036464,GO:0042221,GO:0042493,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043614,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0048468,GO:0048477,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051704,GO:0051716,GO:0060255,GO:0060429,GO:0065007,GO:0070887,GO:0070993,GO:0071540,GO:0071541,GO:0071704,GO:0071944,GO:0075522,GO:0075525,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112 |
| Evalue | 1.34e-201 |
| EggNOG OGs | COG5354@1|root,KOG2314@2759|Eukaryota |
| Description | Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome |
| COG category | J |
| BRITE | ko00000,ko00001,ko03012,ko03019 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil8924.t1 ID=Gchil8924.t1|Name=Gchil8924.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=708bp MPGVGPEEVMPINSIEDDFQRKRDEMHRVAKDCVVIVDNVPKIGPEKYEK LVGRLTPLFERPARMRQDEHDKPRLNFARNESGSTLGFAIAEYMTPEDAH KAVTSLHNFQLDRSHRFWVCTAGNLEKLRNIPERFVPPPPLPPSLKNRPN FKSWLLDERGRDQFMIRHNHETSVYWHDHIVKPQLDYAKVMWSDAGVVWS PRGTYLATFHQRGIKLWGRTTSLEGEVDWVIVMRFEHSNVSLVHFSPCEK YLITFNGTEPERDDKRNPRAILIWDVLTGKKKRGFLGPPRSMIGPDGTIP WPIFQWSHDDKYFARLNENAISVYQTLDMGVVDKKSMKIPHVRGFAWSPT SNIMAYWTPEVNDSPARVTVVELPSKKEIRQKALYSVSSIVLHWQQEGKF LCCKVDRLTKSKKGQFTNFELFRVQAKDIPIEVLEYKEKDIVQAFGWEPQ GHRFAVIHGYSDKPGKTDVSFFTMEGIIGELKPLFTLENRNVNQMRWSPK GRFVLLAALGSPNGNLEWYDINDAIGKETPEPVGTNQHFLCNDAQWDPSG RFVSSFVTYWRNSNENGFVIWTMYGKELCRTSVEMLYQFAWRPRPPSLLS AKQRKAIKKSLKVKKEKYEREDKDLRDTVSSGKAAQRKAQRDAFYAFRNS AKKTLDEEATRRQEAIAVYGTSGDDKETITEVVETIVSVKNEIDFSKKLL TSDDERD* back to topspliced messenger RNA >Gchil8924.t1 ID=Gchil8924.t1|Name=Gchil8924.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2124bp|location=Sequence derived from alignment at tig00004370_pilon:146791..149172+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCCTGGTGTGGGACCTGAAGAGGTGATGCCGATTAATTCGATCGAAGA TGACTTTCAGCGGAAGAGAGATGAAATGCATCGAGTGGCCAAGGATTGTG TTGTAATTGTTGACAATGTACCAAAAATTGGACCAGAAAAGTATGAGAAG CTTGTTGGGAGGCTAACCCCCTTGTTTGAAAGACCTGCTCGCATGCGTCA AGACGAACACGACAAGCCTCGTTTAAACTTTGCCCGAAATGAGAGCGGAT CGACATTGGGATTTGCTATCGCCGAGTACATGACCCCGGAGGATGCACAC AAAGCAGTCACTTCGCTCCATAACTTTCAACTAGACAGATCTCATCGGTT CTGGGTTTGTACTGCCGGAAATCTCGAGAAGCTCAGAAATATTCCCGAAA GGTTTGTTCCCCCTCCTCCATTACCCCCCAGTTTGAAGAACAGACCAAAT TTCAAAAGCTGGTTGCTTGATGAGCGAGGGCGTGATCAATTCATGATCCG CCACAACCATGAAACGAGTGTCTACTGGCATGATCACATCGTTAAGCCCC AATTGGACTATGCCAAGGTGATGTGGTCAGATGCTGGAGTAGTTTGGTCT CCTCGTGGCACATATCTTGCAACCTTCCATCAGCGCGGTATAAAGTTGTG GGGTCGCACTACGTCTCTTGAAGGTGAAGTAGATTGGGTGATAGTCATGC GCTTCGAGCACTCAAACGTATCTCTTGTTCACTTTTCGCCATGTGAAAAA TACCTCATCACTTTTAATGGTACAGAACCCGAGCGAGATGATAAAAGGAA TCCACGTGCGATTCTAATATGGGATGTTTTGACTGGCAAGAAGAAGCGTG GGTTCTTGGGTCCACCAAGATCAATGATTGGTCCTGATGGGACAATACCG TGGCCTATATTTCAATGGTCACATGATGATAAATACTTCGCGAGATTGAA CGAGAATGCGATTTCCGTTTATCAAACTCTGGACATGGGCGTCGTGGACA AGAAGTCGATGAAAATCCCGCATGTTAGAGGATTTGCATGGTCACCAACA TCAAATATTATGGCGTATTGGACTCCTGAAGTGAACGATTCTCCAGCTCG AGTAACGGTTGTCGAGTTGCCGTCCAAGAAAGAAATTCGGCAAAAAGCCC TGTATTCCGTTTCGTCCATTGTTCTCCATTGGCAGCAAGAAGGGAAATTC CTTTGTTGCAAAGTCGACCGCCTCACAAAGAGTAAGAAAGGGCAGTTTAC CAACTTTGAATTGTTTCGAGTGCAAGCAAAAGATATTCCAATTGAAGTTT TGGAATACAAAGAGAAAGATATCGTGCAAGCATTTGGTTGGGAACCACAA GGCCATCGTTTTGCTGTGATACATGGATACAGTGACAAACCTGGAAAAAC GGATGTGAGCTTCTTCACGATGGAGGGTATTATTGGTGAGCTTAAGCCAT TGTTTACCCTTGAGAATAGGAACGTGAATCAGATGCGATGGTCTCCGAAA GGTCGATTTGTTCTTCTAGCTGCTCTTGGATCGCCGAACGGAAACCTTGA ATGGTATGACATCAACGACGCCATCGGAAAGGAAACCCCGGAGCCTGTCG GGACGAACCAGCATTTCCTATGCAATGATGCACAATGGGACCCGTCTGGG AGATTTGTATCGAGTTTCGTGACGTATTGGCGGAACAGTAACGAAAACGG ATTCGTTATCTGGACTATGTATGGCAAGGAACTCTGCCGGACCAGTGTTG AGATGTTATACCAGTTTGCCTGGAGGCCAAGGCCCCCATCTCTTCTTTCT GCGAAGCAGCGTAAGGCCATAAAGAAGAGTCTGAAAGTTAAGAAAGAGAA ATACGAAAGAGAGGATAAGGATCTTAGAGATACAGTCAGTAGTGGGAAGG CCGCGCAGCGAAAGGCCCAACGCGATGCATTTTATGCTTTCCGAAACAGT GCAAAGAAAACTCTCGATGAGGAAGCAACACGGCGTCAAGAAGCAATTGC TGTGTATGGTACATCAGGAGACGACAAAGAGACAATTACCGAGGTGGTTG AGACAATTGTCTCTGTCAAGAACGAAATTGACTTCAGTAAGAAGCTACTC ACCAGCGATGATGAGCGCGATTAA back to topprotein sequence of Gchil8924.t1 >Gchil8924.t1 ID=Gchil8924.t1|Name=Gchil8924.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=708bp
MPGVGPEEVMPINSIEDDFQRKRDEMHRVAKDCVVIVDNVPKIGPEKYEK LVGRLTPLFERPARMRQDEHDKPRLNFARNESGSTLGFAIAEYMTPEDAH KAVTSLHNFQLDRSHRFWVCTAGNLEKLRNIPERFVPPPPLPPSLKNRPN FKSWLLDERGRDQFMIRHNHETSVYWHDHIVKPQLDYAKVMWSDAGVVWS PRGTYLATFHQRGIKLWGRTTSLEGEVDWVIVMRFEHSNVSLVHFSPCEK YLITFNGTEPERDDKRNPRAILIWDVLTGKKKRGFLGPPRSMIGPDGTIP WPIFQWSHDDKYFARLNENAISVYQTLDMGVVDKKSMKIPHVRGFAWSPT SNIMAYWTPEVNDSPARVTVVELPSKKEIRQKALYSVSSIVLHWQQEGKF LCCKVDRLTKSKKGQFTNFELFRVQAKDIPIEVLEYKEKDIVQAFGWEPQ GHRFAVIHGYSDKPGKTDVSFFTMEGIIGELKPLFTLENRNVNQMRWSPK GRFVLLAALGSPNGNLEWYDINDAIGKETPEPVGTNQHFLCNDAQWDPSG RFVSSFVTYWRNSNENGFVIWTMYGKELCRTSVEMLYQFAWRPRPPSLLS AKQRKAIKKSLKVKKEKYEREDKDLRDTVSSGKAAQRKAQRDAFYAFRNS AKKTLDEEATRRQEAIAVYGTSGDDKETITEVVETIVSVKNEIDFSKKLL TSDDERD* back to topmRNA from alignment at tig00004370_pilon:146791..149172+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil8924.t1 ID=Gchil8924.t1|Name=Gchil8924.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2382bp|location=Sequence derived from alignment at tig00004370_pilon:146791..149172+ (Gracilaria chilensis NLEC103_M9 male) ATGCCTGGTGTGGGACCTGAAGAGGTGATGCCGATTAATTCGATCGAAGA
TGACTTTCAGCGGAAGAGAGATGAAATGCATCGAGTGGCCAAGGATTGTG
TTGTAATTGTTGACAATGTACCAAAAATTGGACCAGAAAAGTATGAGAAG
CTTGTTGGGAGGCTAACCCCCTTGTTTGAAAGACCTGCTCGCATGCGTCA
AGACGAACACGACAAGCCTCGTTTAAACTTTGCCCGAAATGAGAGCGGAT
CGACATTGGGATTTGCTATCGCCGAGTACATGACCCCGGAGGATGCACAC
AAAGCAGTCACTTCGCTCCATAACTTTCAACTAGACAGATCTCATCGGTT
CTGGGTTTGTACTGCCGGAAATCTCGAGAAGCTCAGAAATATTCCCGAAA
GGTTTGTTCCCCCTCCTCCATTACCCCCCAGTTTGAAGAACAGACCAAAT
TTCAAAAGCTGGTTGCTTGATGAGCGAGGGCGTGATCAATTCATGATCCG
CCACAACCATGAAACGAGTGTCTACTGGCATGATCACATCGTTAAGCCCC
AATTGGTAAGTGCGCATGACTTGTTCCTTCTAGATCACCCCAACGCCAGC
GATGAAGAAGATAGAGACCCGTGACCGATCTCTCTTCAAGAACTGTATTA
ACTACATGGATCGAAGAGGATGTGGATTGTCTTAGAGGCTGTTTCAGAGT
CTGCGTTTCATATCTCAATATCATTATCTTTTTCTAAAAGTCTCGTCGAT
CTTCAGTCAGATGTATACTGACGAAGCGCTGCGTTTATTCATCTCTTTCT
ACTCTATGAACAGGACTATGCCAAGGTGATGTGGTCAGATGCTGGAGTAG
TTTGGTCTCCTCGTGGCACATATCTTGCAACCTTCCATCAGCGCGGTATA
AAGTTGTGGGGTCGCACTACGTCTCTTGAAGGTGAAGTAGATTGGGTGAT
AGTCATGCGCTTCGAGCACTCAAACGTATCTCTTGTTCACTTTTCGCCAT
GTGAAAAATACCTCATCACTTTTAATGGTACAGAACCCGAGCGAGATGAT
AAAAGGAATCCACGTGCGATTCTAATATGGGATGTTTTGACTGGCAAGAA
GAAGCGTGGGTTCTTGGGTCCACCAAGATCAATGATTGGTCCTGATGGGA
CAATACCGTGGCCTATATTTCAATGGTCACATGATGATAAATACTTCGCG
AGATTGAACGAGAATGCGATTTCCGTTTATCAAACTCTGGACATGGGCGT
CGTGGACAAGAAGTCGATGAAAATCCCGCATGTTAGAGGATTTGCATGGT
CACCAACATCAAATATTATGGCGTATTGGACTCCTGAAGTGAACGATTCT
CCAGCTCGAGTAACGGTTGTCGAGTTGCCGTCCAAGAAAGAAATTCGGCA
AAAAGCCCTGTATTCCGTTTCGTCCATTGTTCTCCATTGGCAGCAAGAAG
GGAAATTCCTTTGTTGCAAAGTCGACCGCCTCACAAAGAGTAAGAAAGGG
CAGTTTACCAACTTTGAATTGTTTCGAGTGCAAGCAAAAGATATTCCAAT
TGAAGTTTTGGAATACAAAGAGAAAGATATCGTGCAAGCATTTGGTTGGG
AACCACAAGGCCATCGTTTTGCTGTGATACATGGATACAGTGACAAACCT
GGAAAAACGGATGTGAGCTTCTTCACGATGGAGGGTATTATTGGTGAGCT
TAAGCCATTGTTTACCCTTGAGAATAGGAACGTGAATCAGATGCGATGGT
CTCCGAAAGGTCGATTTGTTCTTCTAGCTGCTCTTGGATCGCCGAACGGA
AACCTTGAATGGTATGACATCAACGACGCCATCGGAAAGGAAACCCCGGA
GCCTGTCGGGACGAACCAGCATTTCCTATGCAATGATGCACAATGGGACC
CGTCTGGGAGATTTGTATCGAGTTTCGTGACGTATTGGCGGAACAGTAAC
GAAAACGGATTCGTTATCTGGACTATGTATGGCAAGGAACTCTGCCGGAC
CAGTGTTGAGATGTTATACCAGTTTGCCTGGAGGCCAAGGCCCCCATCTC
TTCTTTCTGCGAAGCAGCGTAAGGCCATAAAGAAGAGTCTGAAAGTTAAG
AAAGAGAAATACGAAAGAGAGGATAAGGATCTTAGAGATACAGTCAGTAG
TGGGAAGGCCGCGCAGCGAAAGGCCCAACGCGATGCATTTTATGCTTTCC
GAAACAGTGCAAAGAAAACTCTCGATGAGGAAGCAACACGGCGTCAAGAA
GCAATTGCTGTGTATGGTACATCAGGAGACGACAAAGAGACAATTACCGA
GGTGGTTGAGACAATTGTCTCTGTCAAGAACGAAATTGACTTCAGTAAGA
AGCTACTCACCAGCGATGATGAGCGCGATTAA back to topCoding sequence (CDS) from alignment at tig00004370_pilon:146791..149172+ >Gchil8924.t1 ID=Gchil8924.t1|Name=Gchil8924.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2124bp|location=Sequence derived from alignment at tig00004370_pilon:146791..149172+ (Gracilaria chilensis NLEC103_M9 male) ATGCCTGGTGTGGGACCTGAAGAGGTGATGCCGATTAATTCGATCGAAGA TGACTTTCAGCGGAAGAGAGATGAAATGCATCGAGTGGCCAAGGATTGTG TTGTAATTGTTGACAATGTACCAAAAATTGGACCAGAAAAGTATGAGAAG CTTGTTGGGAGGCTAACCCCCTTGTTTGAAAGACCTGCTCGCATGCGTCA AGACGAACACGACAAGCCTCGTTTAAACTTTGCCCGAAATGAGAGCGGAT CGACATTGGGATTTGCTATCGCCGAGTACATGACCCCGGAGGATGCACAC AAAGCAGTCACTTCGCTCCATAACTTTCAACTAGACAGATCTCATCGGTT CTGGGTTTGTACTGCCGGAAATCTCGAGAAGCTCAGAAATATTCCCGAAA GGTTTGTTCCCCCTCCTCCATTACCCCCCAGTTTGAAGAACAGACCAAAT TTCAAAAGCTGGTTGCTTGATGAGCGAGGGCGTGATCAATTCATGATCCG CCACAACCATGAAACGAGTGTCTACTGGCATGATCACATCGTTAAGCCCC AATTGGACTATGCCAAGGTGATGTGGTCAGATGCTGGAGTAGTTTGGTCT CCTCGTGGCACATATCTTGCAACCTTCCATCAGCGCGGTATAAAGTTGTG GGGTCGCACTACGTCTCTTGAAGGTGAAGTAGATTGGGTGATAGTCATGC GCTTCGAGCACTCAAACGTATCTCTTGTTCACTTTTCGCCATGTGAAAAA TACCTCATCACTTTTAATGGTACAGAACCCGAGCGAGATGATAAAAGGAA TCCACGTGCGATTCTAATATGGGATGTTTTGACTGGCAAGAAGAAGCGTG GGTTCTTGGGTCCACCAAGATCAATGATTGGTCCTGATGGGACAATACCG TGGCCTATATTTCAATGGTCACATGATGATAAATACTTCGCGAGATTGAA CGAGAATGCGATTTCCGTTTATCAAACTCTGGACATGGGCGTCGTGGACA AGAAGTCGATGAAAATCCCGCATGTTAGAGGATTTGCATGGTCACCAACA TCAAATATTATGGCGTATTGGACTCCTGAAGTGAACGATTCTCCAGCTCG AGTAACGGTTGTCGAGTTGCCGTCCAAGAAAGAAATTCGGCAAAAAGCCC TGTATTCCGTTTCGTCCATTGTTCTCCATTGGCAGCAAGAAGGGAAATTC CTTTGTTGCAAAGTCGACCGCCTCACAAAGAGTAAGAAAGGGCAGTTTAC CAACTTTGAATTGTTTCGAGTGCAAGCAAAAGATATTCCAATTGAAGTTT TGGAATACAAAGAGAAAGATATCGTGCAAGCATTTGGTTGGGAACCACAA GGCCATCGTTTTGCTGTGATACATGGATACAGTGACAAACCTGGAAAAAC GGATGTGAGCTTCTTCACGATGGAGGGTATTATTGGTGAGCTTAAGCCAT TGTTTACCCTTGAGAATAGGAACGTGAATCAGATGCGATGGTCTCCGAAA GGTCGATTTGTTCTTCTAGCTGCTCTTGGATCGCCGAACGGAAACCTTGA ATGGTATGACATCAACGACGCCATCGGAAAGGAAACCCCGGAGCCTGTCG GGACGAACCAGCATTTCCTATGCAATGATGCACAATGGGACCCGTCTGGG AGATTTGTATCGAGTTTCGTGACGTATTGGCGGAACAGTAACGAAAACGG ATTCGTTATCTGGACTATGTATGGCAAGGAACTCTGCCGGACCAGTGTTG AGATGTTATACCAGTTTGCCTGGAGGCCAAGGCCCCCATCTCTTCTTTCT GCGAAGCAGCGTAAGGCCATAAAGAAGAGTCTGAAAGTTAAGAAAGAGAA ATACGAAAGAGAGGATAAGGATCTTAGAGATACAGTCAGTAGTGGGAAGG CCGCGCAGCGAAAGGCCCAACGCGATGCATTTTATGCTTTCCGAAACAGT GCAAAGAAAACTCTCGATGAGGAAGCAACACGGCGTCAAGAAGCAATTGC TGTGTATGGTACATCAGGAGACGACAAAGAGACAATTACCGAGGTGGTTG AGACAATTGTCTCTGTCAAGAACGAAATTGACTTCAGTAAGAAGCTACTC ACCAGCGATGATGAGCGCGATTAA back to top
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