Gchil8922.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8922.t1
Unique Name	Gchil8922.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	354

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:143975..145036 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3712.Bo8g030680.1
PFAMs	ADK,DUF1995
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00002
KEGG ko	ko:K00939
KEGG Reaction	R00127,R01547,R11319
KEGG Pathway	ko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130
KEGG Module	M00049
GOs	GO:0003674,GO:0003824,GO:0004017,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009941,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0034641,GO:0034654,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046940,GO:0050145,GO:0055035,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576
Evalue	1.67e-25
EggNOG OGs	COG0563@1\|root,KOG3078@2759\|Eukaryota,37HGK@33090\|Viridiplantae,3GDCM@35493\|Streptophyta,3HR8N@3699\|Brassicales
EC	2.7.4.3
Description	Belongs to the adenylate kinase family
COG category	F
BRITE	ko00000,ko00001,ko00002,ko01000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8922	Gchil8922	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 143975..145036 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8922.t1.start1	Gchil8922.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 143975..143977 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8922.t1.CDS1	Gchil8922.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 143975..145036 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8922.t1.exon1	Gchil8922.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 143975..145036 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8922.t1.stop1	Gchil8922.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 145034..145036 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8922.t1	Gchil8922.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 143975..145036 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:143975..145036+
coding sequence from alignment at tig00004370_pilon:143975..145036+

mRNA sequence

>Gchil8922.t1 ID=Gchil8922.t1|Name=Gchil8922.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=354bp
MESPSPSSSSIPESGSSQKASSIVSGTPCFTKRIMGTPMDRATRQQYLEF
AGTAFESYLQSFFNDENSVSRLSQLSLLLPELNPVLDVYDRRFLLQFAWT
LLRVVSSLRLRACVLVQGARRFGAMPLSVAGLRRNFDADLELSRSEWPEN
SISSGELEDLEAIGEDVDIVLVLSPTNAVSIPTIESVSNLVKHFKRKPIT
LINPRLEEVPSHSGIMQVQGRADRMRLLERFEDIFYIRLLFDAGKNFPLR
GILYKAYPNRWQAWCSPSYDKYVLSLETDQRPEFSAISDAFRGTLYQIQK
ERMVKSGDMTAIEQLFLSPPVITGIMLLIAFAIFKGAGDSFPAFWHSPRS
SLP*

spliced messenger RNA

>Gchil8922.t1 ID=Gchil8922.t1|Name=Gchil8922.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1062bp|location=Sequence derived from alignment at tig00004370_pilon:143975..145036+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATCTCCATCACCGTCTTCATCTTCTATACCTGAATCAGGTAGTAG
TCAGAAAGCTTCCTCAATCGTTTCTGGTACACCTTGCTTTACGAAGCGTA
TCATGGGCACGCCTATGGACCGTGCCACACGCCAGCAGTATCTAGAATTC
GCGGGTACCGCATTTGAGTCCTACCTTCAATCATTTTTTAACGACGAGAA
CAGCGTCTCTCGGCTATCACAGTTGTCACTTTTGTTGCCGGAACTCAATC
CTGTACTAGATGTATATGACCGTCGCTTTCTCTTGCAGTTCGCATGGACG
TTGCTACGAGTTGTTTCATCACTCAGGCTTCGAGCTTGTGTTCTTGTCCA
AGGTGCACGCCGCTTCGGAGCAATGCCACTGTCTGTCGCAGGGCTGCGCC
GAAATTTTGACGCCGATCTGGAGCTCTCTCGTTCTGAATGGCCAGAGAAT
TCCATTTCTTCCGGGGAGCTTGAAGATTTGGAGGCCATTGGTGAAGATGT
GGATATAGTTCTTGTTCTATCTCCTACGAATGCTGTGTCTATTCCAACAA
TAGAAAGCGTCTCAAACCTTGTTAAACATTTTAAGCGCAAACCGATCACC
CTTATCAATCCCCGCCTTGAAGAGGTACCCAGTCATAGCGGTATTATGCA
GGTTCAAGGTAGAGCGGACAGAATGCGGTTATTAGAACGCTTCGAAGATA
TTTTCTACATACGTCTTCTCTTCGATGCTGGCAAGAACTTTCCTCTACGC
GGTATTTTGTACAAGGCCTACCCTAATCGATGGCAAGCATGGTGTAGTCC
ATCGTACGACAAATACGTTCTATCACTGGAAACGGATCAGAGGCCAGAGT
TCAGCGCAATAAGCGACGCGTTCCGAGGAACATTGTATCAAATACAGAAA
GAGCGAATGGTTAAAAGTGGGGACATGACAGCGATTGAGCAGCTGTTTCT
ATCGCCTCCGGTGATAACTGGTATAATGTTATTGATTGCATTTGCAATCT
TCAAAGGGGCTGGGGACAGCTTTCCCGCTTTTTGGCATTCACCAAGGAGC
TCTCTACCTTGA

protein sequence of Gchil8922.t1

>Gchil8922.t1 ID=Gchil8922.t1|Name=Gchil8922.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=354bp
MESPSPSSSSIPESGSSQKASSIVSGTPCFTKRIMGTPMDRATRQQYLEF
AGTAFESYLQSFFNDENSVSRLSQLSLLLPELNPVLDVYDRRFLLQFAWT
LLRVVSSLRLRACVLVQGARRFGAMPLSVAGLRRNFDADLELSRSEWPEN
SISSGELEDLEAIGEDVDIVLVLSPTNAVSIPTIESVSNLVKHFKRKPIT
LINPRLEEVPSHSGIMQVQGRADRMRLLERFEDIFYIRLLFDAGKNFPLR
GILYKAYPNRWQAWCSPSYDKYVLSLETDQRPEFSAISDAFRGTLYQIQK
ERMVKSGDMTAIEQLFLSPPVITGIMLLIAFAIFKGAGDSFPAFWHSPRS
SLP*

mRNA from alignment at tig00004370_pilon:143975..145036+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8922.t1 ID=Gchil8922.t1|Name=Gchil8922.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1062bp|location=Sequence derived from alignment at tig00004370_pilon:143975..145036+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAATCTCCATCACCGTCTTCATCTTCTATACCTGAATCAGGTAGTAG
TCAGAAAGCTTCCTCAATCGTTTCTGGTACACCTTGCTTTACGAAGCGTA
TCATGGGCACGCCTATGGACCGTGCCACACGCCAGCAGTATCTAGAATTC
GCGGGTACCGCATTTGAGTCCTACCTTCAATCATTTTTTAACGACGAGAA
CAGCGTCTCTCGGCTATCACAGTTGTCACTTTTGTTGCCGGAACTCAATC
CTGTACTAGATGTATATGACCGTCGCTTTCTCTTGCAGTTCGCATGGACG
TTGCTACGAGTTGTTTCATCACTCAGGCTTCGAGCTTGTGTTCTTGTCCA
AGGTGCACGCCGCTTCGGAGCAATGCCACTGTCTGTCGCAGGGCTGCGCC
GAAATTTTGACGCCGATCTGGAGCTCTCTCGTTCTGAATGGCCAGAGAAT
TCCATTTCTTCCGGGGAGCTTGAAGATTTGGAGGCCATTGGTGAAGATGT
GGATATAGTTCTTGTTCTATCTCCTACGAATGCTGTGTCTATTCCAACAA
TAGAAAGCGTCTCAAACCTTGTTAAACATTTTAAGCGCAAACCGATCACC
CTTATCAATCCCCGCCTTGAAGAGGTACCCAGTCATAGCGGTATTATGCA
GGTTCAAGGTAGAGCGGACAGAATGCGGTTATTAGAACGCTTCGAAGATA
TTTTCTACATACGTCTTCTCTTCGATGCTGGCAAGAACTTTCCTCTACGC
GGTATTTTGTACAAGGCCTACCCTAATCGATGGCAAGCATGGTGTAGTCC
ATCGTACGACAAATACGTTCTATCACTGGAAACGGATCAGAGGCCAGAGT
TCAGCGCAATAAGCGACGCGTTCCGAGGAACATTGTATCAAATACAGAAA
GAGCGAATGGTTAAAAGTGGGGACATGACAGCGATTGAGCAGCTGTTTCT
ATCGCCTCCGGTGATAACTGGTATAATGTTATTGATTGCATTTGCAATCT
TCAAAGGGGCTGGGGACAGCTTTCCCGCTTTTTGGCATTCACCAAGGAGC
TCTCTACCTTGA

Coding sequence (CDS) from alignment at tig00004370_pilon:143975..145036+

>Gchil8922.t1 ID=Gchil8922.t1|Name=Gchil8922.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1062bp|location=Sequence derived from alignment at tig00004370_pilon:143975..145036+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAATCTCCATCACCGTCTTCATCTTCTATACCTGAATCAGGTAGTAG
TCAGAAAGCTTCCTCAATCGTTTCTGGTACACCTTGCTTTACGAAGCGTA
TCATGGGCACGCCTATGGACCGTGCCACACGCCAGCAGTATCTAGAATTC
GCGGGTACCGCATTTGAGTCCTACCTTCAATCATTTTTTAACGACGAGAA
CAGCGTCTCTCGGCTATCACAGTTGTCACTTTTGTTGCCGGAACTCAATC
CTGTACTAGATGTATATGACCGTCGCTTTCTCTTGCAGTTCGCATGGACG
TTGCTACGAGTTGTTTCATCACTCAGGCTTCGAGCTTGTGTTCTTGTCCA
AGGTGCACGCCGCTTCGGAGCAATGCCACTGTCTGTCGCAGGGCTGCGCC
GAAATTTTGACGCCGATCTGGAGCTCTCTCGTTCTGAATGGCCAGAGAAT
TCCATTTCTTCCGGGGAGCTTGAAGATTTGGAGGCCATTGGTGAAGATGT
GGATATAGTTCTTGTTCTATCTCCTACGAATGCTGTGTCTATTCCAACAA
TAGAAAGCGTCTCAAACCTTGTTAAACATTTTAAGCGCAAACCGATCACC
CTTATCAATCCCCGCCTTGAAGAGGTACCCAGTCATAGCGGTATTATGCA
GGTTCAAGGTAGAGCGGACAGAATGCGGTTATTAGAACGCTTCGAAGATA
TTTTCTACATACGTCTTCTCTTCGATGCTGGCAAGAACTTTCCTCTACGC
GGTATTTTGTACAAGGCCTACCCTAATCGATGGCAAGCATGGTGTAGTCC
ATCGTACGACAAATACGTTCTATCACTGGAAACGGATCAGAGGCCAGAGT
TCAGCGCAATAAGCGACGCGTTCCGAGGAACATTGTATCAAATACAGAAA
GAGCGAATGGTTAAAAGTGGGGACATGACAGCGATTGAGCAGCTGTTTCT
ATCGCCTCCGGTGATAACTGGTATAATGTTATTGATTGCATTTGCAATCT
TCAAAGGGGCTGGGGACAGCTTTCCCGCTTTTTGGCATTCACCAAGGAGC
TCTCTACCTTGA