Gchil8920.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8920.t1
Unique NameGchil8920.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length401
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:140378..141580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX53899
Preferred nameALAD
PFAMsALAD
Max annot lvl2759|Eukaryota
KEGG rclassRC00918,RC01781
KEGG koko:K01698,ko:K09490,ko:K09499
KEGG TC1.A.33
KEGG ReactionR00036
KEGG Pathwayko00860,ko01100,ko01110,ko01120,ko03060,ko04141,ko04918,ko05020,map00860,map01100,map01110,map01120,map03060,map04141,map04918,map05020
KEGG ModuleM00121
GOsGO:0001101,GO:0001666,GO:0001775,GO:0002237,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004655,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006979,GO:0007584,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009314,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009635,GO:0009636,GO:0009719,GO:0009725,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0010043,GO:0010044,GO:0010212,GO:0010243,GO:0010266,GO:0010269,GO:0010288,GO:0010605,GO:0012505,GO:0014070,GO:0014823,GO:0016043,GO:0016192,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019222,GO:0019438,GO:0022607,GO:0030141,GO:0030162,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031667,GO:0031960,GO:0031974,GO:0031982,GO:0031983,GO:0032025,GO:0032268,GO:0032269,GO:0032496,GO:0032940,GO:0033013,GO:0033014,GO:0033197,GO:0033273,GO:0033993,GO:0034097,GO:0034641,GO:0034774,GO:0036230,GO:0036293,GO:0042119,GO:0042168,GO:0042176,GO:0042177,GO:0042221,GO:0042440,GO:0042493,GO:0042802,GO:0043167,GO:0043169,GO:0043200,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043933,GO:0044085,GO:0044237,GO:0044249,GO:0044271,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045055,GO:0045321,GO:0045471,GO:0045861,GO:0046148,GO:0046483,GO:0046677,GO:0046685,GO:0046686,GO:0046689,GO:0046872,GO:0046903,GO:0046914,GO:0048519,GO:0048523,GO:0048545,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051246,GO:0051248,GO:0051259,GO:0051260,GO:0051384,GO:0051597,GO:0051704,GO:0051707,GO:0051716,GO:0060205,GO:0060255,GO:0061136,GO:0065003,GO:0065007,GO:0070013,GO:0070482,GO:0070541,GO:0070542,GO:0070670,GO:0070887,GO:0071241,GO:0071248,GO:0071284,GO:0071310,GO:0071345,GO:0071353,GO:0071704,GO:0071840,GO:0080090,GO:0097305,GO:0097708,GO:0099503,GO:0101002,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901698,GO:1901700,GO:1901799,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1904813,GO:1904854
Evalue4.84e-199
EggNOG OGsCOG0113@1|root,KOG2794@2759|Eukaryota
EC4.2.1.24
Descriptionporphobilinogen synthase activity
COG categoryH
BiGG ReactioniRC1080.CRv4_Au5_s2_g8620_t1
BRITEko00000,ko00001,ko00002,ko01000,ko03110,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8920Gchil8920Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 140378..141580 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8920.t1.start1Gchil8920.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 140378..140380 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8920.t1.CDS1Gchil8920.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 140378..141580 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8920.t1.exon1Gchil8920.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 140378..141580 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8920.t1.stop1Gchil8920.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 141578..141580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8920.t1Gchil8920.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 140378..141580 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8920.t1 ID=Gchil8920.t1|Name=Gchil8920.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=401bp
MASLAFIGTPITSTKRFHGDRFPVDTAPRCGRFSTPYAAAITDRSVRESL
PNLRVNEEGRIWVPQRSRPRRNRKNEGLRSMVRENIVLPSNFIYPLFIHT
KDYNEPISAMPGCERHSVQSVIREVGEAHKLGVSSVVLFPKIPDALKSNA
ADECYNPDGMIPKAVSAIKMKYPNVSVWTDVALDPYSDQGHDGMVSSDRL
GDGGKGRILNDETVEQLCRQALSHARAGADVVSPSDMMDGRIGAIRDALD
AHGFTDVSIVSYCAKYASAFYGPFREALDSAPREDSNAPTNKKTYQMDPA
NSREALVEAALDIAEGADMLMVKPGLPFLDIIFRLKQETNLPIAAYHVSG
EYAMMKAAAEKGWLDEKTSVLEALLCFKRAGADAILTYYAKQAAQWMHES
*
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spliced messenger RNA

>Gchil8920.t1 ID=Gchil8920.t1|Name=Gchil8920.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00004370_pilon:140378..141580+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAGTCTAGCGTTCATCGGGACGCCAATCACGTCTACAAAGAGGTT
TCATGGCGATAGATTTCCAGTTGACACTGCGCCTCGTTGTGGAAGGTTCT
CTACTCCTTATGCCGCTGCCATAACTGATCGCAGCGTCAGAGAATCTCTT
CCAAATTTGCGCGTGAACGAGGAGGGACGTATTTGGGTTCCACAAAGAAG
TCGCCCTCGTCGGAATCGAAAGAATGAAGGATTACGTTCTATGGTTCGTG
AGAATATTGTATTGCCTTCCAACTTCATTTATCCGCTATTCATCCACACG
AAGGACTACAATGAACCGATCAGCGCTATGCCTGGTTGCGAGAGACATTC
TGTACAAAGTGTGATCAGAGAGGTTGGTGAGGCACACAAACTTGGTGTCA
GTTCTGTTGTGCTCTTCCCTAAAATTCCGGACGCATTAAAGTCTAACGCC
GCCGATGAATGTTATAATCCGGATGGTATGATACCAAAGGCTGTGTCAGC
TATCAAGATGAAGTACCCCAACGTGTCTGTTTGGACTGACGTTGCTCTCG
ACCCGTATTCTGACCAAGGACATGACGGAATGGTCTCTTCCGATAGACTT
GGAGACGGTGGAAAAGGAAGAATTCTGAACGATGAAACCGTTGAGCAGCT
CTGTAGACAAGCTCTATCACACGCAAGGGCCGGAGCTGATGTAGTTTCTC
CATCAGACATGATGGATGGCAGAATAGGTGCCATTCGGGACGCGTTAGAT
GCTCATGGGTTCACGGACGTTTCAATTGTCTCTTATTGCGCAAAGTACGC
ATCTGCGTTCTATGGTCCTTTTAGAGAAGCATTGGATTCCGCACCGCGGG
AAGATTCAAATGCGCCTACGAACAAAAAGACGTACCAGATGGACCCGGCA
AATTCAAGAGAGGCCTTGGTTGAAGCAGCCTTGGATATTGCCGAAGGTGC
TGACATGCTAATGGTCAAACCTGGACTGCCGTTTCTTGACATAATCTTTC
GATTGAAACAGGAGACAAACTTACCCATTGCGGCTTACCATGTTAGTGGC
GAATATGCTATGATGAAAGCTGCCGCGGAGAAGGGTTGGCTGGACGAGAA
GACTTCAGTGCTTGAGGCTCTACTTTGCTTTAAGCGTGCAGGTGCTGATG
CTATTTTGACTTATTATGCAAAGCAGGCGGCTCAGTGGATGCATGAGTCG
TGA
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protein sequence of Gchil8920.t1

>Gchil8920.t1 ID=Gchil8920.t1|Name=Gchil8920.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=401bp
MASLAFIGTPITSTKRFHGDRFPVDTAPRCGRFSTPYAAAITDRSVRESL
PNLRVNEEGRIWVPQRSRPRRNRKNEGLRSMVRENIVLPSNFIYPLFIHT
KDYNEPISAMPGCERHSVQSVIREVGEAHKLGVSSVVLFPKIPDALKSNA
ADECYNPDGMIPKAVSAIKMKYPNVSVWTDVALDPYSDQGHDGMVSSDRL
GDGGKGRILNDETVEQLCRQALSHARAGADVVSPSDMMDGRIGAIRDALD
AHGFTDVSIVSYCAKYASAFYGPFREALDSAPREDSNAPTNKKTYQMDPA
NSREALVEAALDIAEGADMLMVKPGLPFLDIIFRLKQETNLPIAAYHVSG
EYAMMKAAAEKGWLDEKTSVLEALLCFKRAGADAILTYYAKQAAQWMHES
*
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mRNA from alignment at tig00004370_pilon:140378..141580+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8920.t1 ID=Gchil8920.t1|Name=Gchil8920.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00004370_pilon:140378..141580+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGAGTCTAGCGTTCATCGGGACGCCAATCACGTCTACAAAGAGGTT
TCATGGCGATAGATTTCCAGTTGACACTGCGCCTCGTTGTGGAAGGTTCT
CTACTCCTTATGCCGCTGCCATAACTGATCGCAGCGTCAGAGAATCTCTT
CCAAATTTGCGCGTGAACGAGGAGGGACGTATTTGGGTTCCACAAAGAAG
TCGCCCTCGTCGGAATCGAAAGAATGAAGGATTACGTTCTATGGTTCGTG
AGAATATTGTATTGCCTTCCAACTTCATTTATCCGCTATTCATCCACACG
AAGGACTACAATGAACCGATCAGCGCTATGCCTGGTTGCGAGAGACATTC
TGTACAAAGTGTGATCAGAGAGGTTGGTGAGGCACACAAACTTGGTGTCA
GTTCTGTTGTGCTCTTCCCTAAAATTCCGGACGCATTAAAGTCTAACGCC
GCCGATGAATGTTATAATCCGGATGGTATGATACCAAAGGCTGTGTCAGC
TATCAAGATGAAGTACCCCAACGTGTCTGTTTGGACTGACGTTGCTCTCG
ACCCGTATTCTGACCAAGGACATGACGGAATGGTCTCTTCCGATAGACTT
GGAGACGGTGGAAAAGGAAGAATTCTGAACGATGAAACCGTTGAGCAGCT
CTGTAGACAAGCTCTATCACACGCAAGGGCCGGAGCTGATGTAGTTTCTC
CATCAGACATGATGGATGGCAGAATAGGTGCCATTCGGGACGCGTTAGAT
GCTCATGGGTTCACGGACGTTTCAATTGTCTCTTATTGCGCAAAGTACGC
ATCTGCGTTCTATGGTCCTTTTAGAGAAGCATTGGATTCCGCACCGCGGG
AAGATTCAAATGCGCCTACGAACAAAAAGACGTACCAGATGGACCCGGCA
AATTCAAGAGAGGCCTTGGTTGAAGCAGCCTTGGATATTGCCGAAGGTGC
TGACATGCTAATGGTCAAACCTGGACTGCCGTTTCTTGACATAATCTTTC
GATTGAAACAGGAGACAAACTTACCCATTGCGGCTTACCATGTTAGTGGC
GAATATGCTATGATGAAAGCTGCCGCGGAGAAGGGTTGGCTGGACGAGAA
GACTTCAGTGCTTGAGGCTCTACTTTGCTTTAAGCGTGCAGGTGCTGATG
CTATTTTGACTTATTATGCAAAGCAGGCGGCTCAGTGGATGCATGAGTCG
TGA
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Coding sequence (CDS) from alignment at tig00004370_pilon:140378..141580+

>Gchil8920.t1 ID=Gchil8920.t1|Name=Gchil8920.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1203bp|location=Sequence derived from alignment at tig00004370_pilon:140378..141580+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGAGTCTAGCGTTCATCGGGACGCCAATCACGTCTACAAAGAGGTT
TCATGGCGATAGATTTCCAGTTGACACTGCGCCTCGTTGTGGAAGGTTCT
CTACTCCTTATGCCGCTGCCATAACTGATCGCAGCGTCAGAGAATCTCTT
CCAAATTTGCGCGTGAACGAGGAGGGACGTATTTGGGTTCCACAAAGAAG
TCGCCCTCGTCGGAATCGAAAGAATGAAGGATTACGTTCTATGGTTCGTG
AGAATATTGTATTGCCTTCCAACTTCATTTATCCGCTATTCATCCACACG
AAGGACTACAATGAACCGATCAGCGCTATGCCTGGTTGCGAGAGACATTC
TGTACAAAGTGTGATCAGAGAGGTTGGTGAGGCACACAAACTTGGTGTCA
GTTCTGTTGTGCTCTTCCCTAAAATTCCGGACGCATTAAAGTCTAACGCC
GCCGATGAATGTTATAATCCGGATGGTATGATACCAAAGGCTGTGTCAGC
TATCAAGATGAAGTACCCCAACGTGTCTGTTTGGACTGACGTTGCTCTCG
ACCCGTATTCTGACCAAGGACATGACGGAATGGTCTCTTCCGATAGACTT
GGAGACGGTGGAAAAGGAAGAATTCTGAACGATGAAACCGTTGAGCAGCT
CTGTAGACAAGCTCTATCACACGCAAGGGCCGGAGCTGATGTAGTTTCTC
CATCAGACATGATGGATGGCAGAATAGGTGCCATTCGGGACGCGTTAGAT
GCTCATGGGTTCACGGACGTTTCAATTGTCTCTTATTGCGCAAAGTACGC
ATCTGCGTTCTATGGTCCTTTTAGAGAAGCATTGGATTCCGCACCGCGGG
AAGATTCAAATGCGCCTACGAACAAAAAGACGTACCAGATGGACCCGGCA
AATTCAAGAGAGGCCTTGGTTGAAGCAGCCTTGGATATTGCCGAAGGTGC
TGACATGCTAATGGTCAAACCTGGACTGCCGTTTCTTGACATAATCTTTC
GATTGAAACAGGAGACAAACTTACCCATTGCGGCTTACCATGTTAGTGGC
GAATATGCTATGATGAAAGCTGCCGCGGAGAAGGGTTGGCTGGACGAGAA
GACTTCAGTGCTTGAGGCTCTACTTTGCTTTAAGCGTGCAGGTGCTGATG
CTATTTTGACTTATTATGCAAAGCAGGCGGCTCAGTGGATGCATGAGTCG
TGA
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