Gchil892.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil892.t1
Unique NameGchil892.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length389
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:941351..942637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704275.1
Preferred nameRPT5
PFAMsAAA
Max annot lvl2759|Eukaryota
KEGG koko:K03065
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
GOsGO:0000166,GO:0000502,GO:0001678,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005838,GO:0005886,GO:0006355,GO:0006357,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0007088,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008540,GO:0009056,GO:0009057,GO:0009553,GO:0009555,GO:0009743,GO:0009746,GO:0009749,GO:0009756,GO:0009757,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010182,GO:0010243,GO:0010255,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010965,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017025,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0019725,GO:0019941,GO:0022607,GO:0022624,GO:0023052,GO:0030071,GO:0030162,GO:0030163,GO:0030433,GO:0030554,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031595,GO:0031597,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033500,GO:0033554,GO:0034284,GO:0034622,GO:0034976,GO:0035639,GO:0036094,GO:0036402,GO:0036503,GO:0042176,GO:0042221,GO:0042592,GO:0042593,GO:0042623,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043248,GO:0043254,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045893,GO:0045898,GO:0045899,GO:0045931,GO:0045935,GO:0045944,GO:0048229,GO:0048518,GO:0048522,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051603,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0055082,GO:0060255,GO:0060260,GO:0060261,GO:0061136,GO:0062033,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070682,GO:0070887,GO:0071310,GO:0071322,GO:0071326,GO:0071331,GO:0071333,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090068,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901700,GO:1901701,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1902680,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1903508,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2000112,GO:2000142,GO:2000144,GO:2001141,GO:2001252
Evalue1.79e-188
EggNOG OGsCOG1222@1|root,KOG0652@2759|Eukaryota
DescriptionBelongs to the AAA ATPase family
COG categoryO
BRITEko00000,ko00001,ko00002,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil892Gchil892Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 941351..942637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil892.t1Gchil892.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 941351..942637 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil892.t1.start1Gchil892.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 941351..941353 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil892.t1.CDS1Gchil892.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 941351..942298 +
Gchil892.t1.CDS2Gchil892.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 942419..942637 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil892.t1.exon1Gchil892.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 941351..942298 +
Gchil892.t1.exon2Gchil892.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 942419..942637 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil892.t1.intron1Gchil892.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000017_pilon 942299..942418 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil892.t1.stop1Gchil892.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 942635..942637 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil892.t1 ID=Gchil892.t1|Name=Gchil892.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=389bp
MAAAALGDIAGELMQDESLDQQILHAPVDELLTRVRLLEAEVKVLRSEIQ
RLNHEKTHTTEKIRLNNDKVKLNKQLPYLVGNIVEILDIDEEDEEDGANV
DLDSQRKGKAVVLKTSTRQTIFLPVIGLVPAEELKPADLVGVNKDSYLIL
EKLPAEYDSRVKAMEVDEKPTESYADVGGLDKQIQELVEAVVLPLTQKER
FDAVGIRPPKGVLMYGPPGVGKTLLARACAAQTNATFLKLAGPQLVQMFI
GDGAKLVRDAFALAKEKGPTIIFIDELDAIGTKRFDSELSGDREVQRTML
ELLNQLDGFSSDDNIKIHSRKMNVNKDVNFREIAAQCQQFNSAQLKAVTV
EAGMLALRNDRGEIVHEDFVEGVLAVQAKKKGSLHYYS*
back to top

spliced messenger RNA

>Gchil892.t1 ID=Gchil892.t1|Name=Gchil892.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00000017_pilon:941351..942637+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCGGCCGCGCTTGGAGACATCGCAGGCGAGCTCATGCAAGATGA
GAGTCTCGACCAACAAATCCTTCACGCGCCCGTCGATGAGTTACTCACGC
GCGTGCGTCTGCTCGAGGCCGAAGTGAAGGTACTTCGCAGCGAGATTCAA
CGTCTCAATCATGAAAAAACCCACACCACCGAAAAGATCCGACTTAACAA
TGACAAGGTCAAACTGAACAAACAATTGCCGTACTTGGTTGGCAATATCG
TCGAGATTCTGGATATTGATGAGGAGGATGAGGAGGACGGTGCAAATGTC
GATCTAGACTCCCAGAGAAAAGGTAAGGCTGTTGTTTTAAAGACTTCTAC
CAGACAGACCATTTTCCTCCCGGTCATCGGCCTTGTTCCTGCGGAGGAGC
TCAAACCGGCCGATCTGGTTGGTGTCAACAAAGACTCTTACCTCATCCTT
GAAAAGCTACCAGCAGAGTATGATTCCCGCGTAAAAGCCATGGAAGTTGA
CGAAAAACCGACCGAGTCCTATGCCGATGTTGGTGGGCTAGATAAACAGA
TCCAGGAGCTCGTCGAAGCCGTTGTTCTACCGTTGACGCAGAAGGAACGC
TTCGATGCCGTCGGTATTCGTCCACCAAAGGGTGTGCTCATGTACGGCCC
GCCCGGTGTGGGCAAGACACTTCTGGCTCGTGCGTGTGCTGCGCAGACCA
ACGCAACCTTCTTGAAACTCGCTGGTCCGCAACTCGTGCAAATGTTTATT
GGCGATGGTGCTAAACTTGTGCGTGATGCGTTTGCCTTGGCGAAAGAAAA
AGGCCCGACCATTATCTTTATTGATGAGTTGGATGCAATTGGTACCAAAA
GATTTGATTCCGAGTTGAGCGGTGATCGAgaggtgcagcgaactatgctt
gagttgttgaatcaacttgacggcttttcctcagacgataacattaagat
tcattcaagaaagatgaaCGTGAACAAAGATGTCAACTTTAGAGAGATTG
CTGCGCAGTGCCAGCAATTTAATTCGGCCCAGCTGAAGGCGGTCACGGTT
GAGGCCGGTATGCTGGCGCTCAGAAATGATCGGGGTGAAATCGTGCATGA
GGATTTTGTTGAAGGCGTACTAGCGGTGCAGGCGAAGAAGAAGGGCTCGT
TGCATTACTACTCGTAA
back to top

protein sequence of Gchil892.t1

>Gchil892.t1 ID=Gchil892.t1|Name=Gchil892.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=389bp
MAAAALGDIAGELMQDESLDQQILHAPVDELLTRVRLLEAEVKVLRSEIQ
RLNHEKTHTTEKIRLNNDKVKLNKQLPYLVGNIVEILDIDEEDEEDGANV
DLDSQRKGKAVVLKTSTRQTIFLPVIGLVPAEELKPADLVGVNKDSYLIL
EKLPAEYDSRVKAMEVDEKPTESYADVGGLDKQIQELVEAVVLPLTQKER
FDAVGIRPPKGVLMYGPPGVGKTLLARACAAQTNATFLKLAGPQLVQMFI
GDGAKLVRDAFALAKEKGPTIIFIDELDAIGTKRFDSELSGDREVQRTML
ELLNQLDGFSSDDNIKIHSRKMNVNKDVNFREIAAQCQQFNSAQLKAVTV
EAGMLALRNDRGEIVHEDFVEGVLAVQAKKKGSLHYYS*
back to top

mRNA from alignment at tig00000017_pilon:941351..942637+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil892.t1 ID=Gchil892.t1|Name=Gchil892.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1287bp|location=Sequence derived from alignment at tig00000017_pilon:941351..942637+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGCGGCCGCGCTTGGAGACATCGCAGGCGAGCTCATGCAAGATGA
GAGTCTCGACCAACAAATCCTTCACGCGCCCGTCGATGAGTTACTCACGC
GCGTGCGTCTGCTCGAGGCCGAAGTGAAGGTACTTCGCAGCGAGATTCAA
CGTCTCAATCATGAAAAAACCCACACCACCGAAAAGATCCGACTTAACAA
TGACAAGGTCAAACTGAACAAACAATTGCCGTACTTGGTTGGCAATATCG
TCGAGATTCTGGATATTGATGAGGAGGATGAGGAGGACGGTGCAAATGTC
GATCTAGACTCCCAGAGAAAAGGTAAGGCTGTTGTTTTAAAGACTTCTAC
CAGACAGACCATTTTCCTCCCGGTCATCGGCCTTGTTCCTGCGGAGGAGC
TCAAACCGGCCGATCTGGTTGGTGTCAACAAAGACTCTTACCTCATCCTT
GAAAAGCTACCAGCAGAGTATGATTCCCGCGTAAAAGCCATGGAAGTTGA
CGAAAAACCGACCGAGTCCTATGCCGATGTTGGTGGGCTAGATAAACAGA
TCCAGGAGCTCGTCGAAGCCGTTGTTCTACCGTTGACGCAGAAGGAACGC
TTCGATGCCGTCGGTATTCGTCCACCAAAGGGTGTGCTCATGTACGGCCC
GCCCGGTGTGGGCAAGACACTTCTGGCTCGTGCGTGTGCTGCGCAGACCA
ACGCAACCTTCTTGAAACTCGCTGGTCCGCAACTCGTGCAAATGTTTATT
GGCGATGGTGCTAAACTTGTGCGTGATGCGTTTGCCTTGGCGAAAGAAAA
AGGCCCGACCATTATCTTTATTGATGAGTTGGATGCAATTGGTACCAAAA
GATTTGATTCCGAGTTGAGCGGTGATCGAgaggtgcagcgaactatgctt
gagttgttgaatcaacttgacggcttttcctcagacgataacattaaggt
aattgctgcaacaaatcgcgtggatattcttgacccggcgttgttgaggt
ctggtcgaatcgacaggaagattgagtttgttttgccagacgagagtgcg
cgtacgattattctacagattcattcaagaaagatgaaCGTGAACAAAGA
TGTCAACTTTAGAGAGATTGCTGCGCAGTGCCAGCAATTTAATTCGGCCC
AGCTGAAGGCGGTCACGGTTGAGGCCGGTATGCTGGCGCTCAGAAATGAT
CGGGGTGAAATCGTGCATGAGGATTTTGTTGAAGGCGTACTAGCGGTGCA
GGCGAAGAAGAAGGGCTCGTTGCATTACTACTCGTAA
back to top

Coding sequence (CDS) from alignment at tig00000017_pilon:941351..942637+

>Gchil892.t1 ID=Gchil892.t1|Name=Gchil892.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1167bp|location=Sequence derived from alignment at tig00000017_pilon:941351..942637+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGCGGCCGCGCTTGGAGACATCGCAGGCGAGCTCATGCAAGATGA
GAGTCTCGACCAACAAATCCTTCACGCGCCCGTCGATGAGTTACTCACGC
GCGTGCGTCTGCTCGAGGCCGAAGTGAAGGTACTTCGCAGCGAGATTCAA
CGTCTCAATCATGAAAAAACCCACACCACCGAAAAGATCCGACTTAACAA
TGACAAGGTCAAACTGAACAAACAATTGCCGTACTTGGTTGGCAATATCG
TCGAGATTCTGGATATTGATGAGGAGGATGAGGAGGACGGTGCAAATGTC
GATCTAGACTCCCAGAGAAAAGGTAAGGCTGTTGTTTTAAAGACTTCTAC
CAGACAGACCATTTTCCTCCCGGTCATCGGCCTTGTTCCTGCGGAGGAGC
TCAAACCGGCCGATCTGGTTGGTGTCAACAAAGACTCTTACCTCATCCTT
GAAAAGCTACCAGCAGAGTATGATTCCCGCGTAAAAGCCATGGAAGTTGA
CGAAAAACCGACCGAGTCCTATGCCGATGTTGGTGGGCTAGATAAACAGA
TCCAGGAGCTCGTCGAAGCCGTTGTTCTACCGTTGACGCAGAAGGAACGC
TTCGATGCCGTCGGTATTCGTCCACCAAAGGGTGTGCTCATGTACGGCCC
GCCCGGTGTGGGCAAGACACTTCTGGCTCGTGCGTGTGCTGCGCAGACCA
ACGCAACCTTCTTGAAACTCGCTGGTCCGCAACTCGTGCAAATGTTTATT
GGCGATGGTGCTAAACTTGTGCGTGATGCGTTTGCCTTGGCGAAAGAAAA
AGGCCCGACCATTATCTTTATTGATGAGTTGGATGCAATTGGTACCAAAA
GATTTGATTCCGAGTTGAGCGGTGATCGAgaggtgcagcgaactatgctt
gagttgttgaatcaacttgacggcttttcctcagacgataacattaagat
tcattcaagaaagatgaaCGTGAACAAAGATGTCAACTTTAGAGAGATTG
CTGCGCAGTGCCAGCAATTTAATTCGGCCCAGCTGAAGGCGGTCACGGTT
GAGGCCGGTATGCTGGCGCTCAGAAATGATCGGGGTGAAATCGTGCATGA
GGATTTTGTTGAAGGCGTACTAGCGGTGCAGGCGAAGAAGAAGGGCTCGT
TGCATTACTACTCGTAA
back to top