Gchil8917.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8917.t1
Unique NameGchil8917.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length391
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:111707..112879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8917Gchil8917Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 111707..112879 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8917.t1.stop1Gchil8917.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 111707..111709 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8917.t1.CDS1Gchil8917.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 111707..112879 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8917.t1.exon1Gchil8917.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 111707..112879 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8917.t1.start1Gchil8917.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 112877..112879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8917.t1Gchil8917.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 111707..112879 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8917.t1 ID=Gchil8917.t1|Name=Gchil8917.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=391bp
MTRLFAPLLLCSIVLLTASGEQVITKSSETIAIKNKLDTAQGKVSDLISR
LDSVSDDATRAKNEIHSTLVEVWKIADMLGQDRCGEVVEKFRAEKQKAQN
KITELQEELNSHLKDTEALKLTVVKLQEANTGLQTEIKTERSRRDGLEIE
TRELRDKLHWANAVANETHKYELVAERLQSLHVVVNERTQLLKRIESMVS
ESHHGSAEWLGEIESLTNIIRDAERDFAGGYQNAAVQGLKRQSEELERRL
REALKSKESLAVEKSTLQKSIDSLQTKMKRGASTFSFGKKDADVVYRPVP
SSSNEGQTWVGTLTLCILSVCTGAVLVFLLSNWQQNKEIETPVGVDKYGF
SPSSSATTPGFNRTSVSPLQYVNSANSKTPASIGSTPRRY*
back to top

spliced messenger RNA

>Gchil8917.t1 ID=Gchil8917.t1|Name=Gchil8917.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00004370_pilon:111707..112879- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCGCTTGTTCGCTCCCCTTTTGCTCTGCTCAATTGTGCTGCTCAC
CGCCAGCGGTGAACAGGTGATCACCAAATCCAGTGAGACCATAGCTATCA
AAAATAAGCTCGACACCGCACAGGGAAAAGTCAGTGATCTCATCTCGCGT
CTTGACTCTGTGTCGGACGATGCCACACGCGCAAAAAATGAGATTCATTC
CACGCTAGTTGAGGTGTGGAAGATCGCCGACATGCTGGGTCAAGATCGCT
GCGGAGAGGTGGTTGAAAAGTTTCGCGCTGAGAAACAGAAGGCGCAAAAC
AAAATCACTGAATTGCAGGAGGAGCTTAACTCCCATCTCAAGGATACAGA
GGCGTTGAAATTGACTGTAGTCAAGCTGCAGGAGGCGAACACTGGCCTGC
AGACGGAGATCAAGACGGAAAGATCCAGACGCGATGGTTTAGAGATTGAG
ACTAGAGAACTTCGGGATAAGTTGCACTGGGCGAATGCAGTGGCCAATGA
GACTCACAAGTATGAACTGGTTGCCGAAAGACTGCAAAGCCTTCATGTTG
TTGTCAATGAGCGCACCCAACTTTTGAAACGTATTGAAAGTATGGTGTCT
GAATCTCATCATGGCTCTGCGGAATGGCTTGGTGAGATTGAATCGCTTAC
CAATATCATCAGGGATGCGGAGAGAGATTTTGCTGGGGGCTATCAGAACG
CCGCTGTGCAGGGCCTGAAACGGCAGTCTGAGGAACTCGAACGAAGGTTA
CGAGAGGCATTAAAGAGCAAAGAATCTCTTGCGGTGGAGAAGAGCACTCT
TCAGAAATCAATTGATTCTCTGCAGACTAAGATGAAGAGAGGTGCTTCCA
CTTTCTCGTTTGGTAAGAAGGATGCTGATGTCGTTTACAGACCGGTACCG
AGTAGCTCCAATGAAGGCCAGACTTGGGTTGGAACGCTCACTCTTTGCAT
TCTTTCAGTGTGCACCGGTGCGGTGCTGGTTTTTTTGTTGTCAAATTGGC
AACAGAATAAGGAGATTGAAACACCAGTTGGTGTGGACAAGTATGGATTT
TCTCCGTCTTCTTCTGCCACCACGCCAGGGTTTAATCGAACCAGCGTTTC
ACCATTGCAATATGTGAACAGCGCAAATTCAAAGACGCCAGCTTCAATAG
GAAGCACTCCTCGAAGATACTGA
back to top

protein sequence of Gchil8917.t1

>Gchil8917.t1 ID=Gchil8917.t1|Name=Gchil8917.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=391bp
MTRLFAPLLLCSIVLLTASGEQVITKSSETIAIKNKLDTAQGKVSDLISR
LDSVSDDATRAKNEIHSTLVEVWKIADMLGQDRCGEVVEKFRAEKQKAQN
KITELQEELNSHLKDTEALKLTVVKLQEANTGLQTEIKTERSRRDGLEIE
TRELRDKLHWANAVANETHKYELVAERLQSLHVVVNERTQLLKRIESMVS
ESHHGSAEWLGEIESLTNIIRDAERDFAGGYQNAAVQGLKRQSEELERRL
REALKSKESLAVEKSTLQKSIDSLQTKMKRGASTFSFGKKDADVVYRPVP
SSSNEGQTWVGTLTLCILSVCTGAVLVFLLSNWQQNKEIETPVGVDKYGF
SPSSSATTPGFNRTSVSPLQYVNSANSKTPASIGSTPRRY*
back to top

mRNA from alignment at tig00004370_pilon:111707..112879-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8917.t1 ID=Gchil8917.t1|Name=Gchil8917.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00004370_pilon:111707..112879- (Gracilaria chilensis NLEC103_M9 male)
ATGACGCGCTTGTTCGCTCCCCTTTTGCTCTGCTCAATTGTGCTGCTCAC
CGCCAGCGGTGAACAGGTGATCACCAAATCCAGTGAGACCATAGCTATCA
AAAATAAGCTCGACACCGCACAGGGAAAAGTCAGTGATCTCATCTCGCGT
CTTGACTCTGTGTCGGACGATGCCACACGCGCAAAAAATGAGATTCATTC
CACGCTAGTTGAGGTGTGGAAGATCGCCGACATGCTGGGTCAAGATCGCT
GCGGAGAGGTGGTTGAAAAGTTTCGCGCTGAGAAACAGAAGGCGCAAAAC
AAAATCACTGAATTGCAGGAGGAGCTTAACTCCCATCTCAAGGATACAGA
GGCGTTGAAATTGACTGTAGTCAAGCTGCAGGAGGCGAACACTGGCCTGC
AGACGGAGATCAAGACGGAAAGATCCAGACGCGATGGTTTAGAGATTGAG
ACTAGAGAACTTCGGGATAAGTTGCACTGGGCGAATGCAGTGGCCAATGA
GACTCACAAGTATGAACTGGTTGCCGAAAGACTGCAAAGCCTTCATGTTG
TTGTCAATGAGCGCACCCAACTTTTGAAACGTATTGAAAGTATGGTGTCT
GAATCTCATCATGGCTCTGCGGAATGGCTTGGTGAGATTGAATCGCTTAC
CAATATCATCAGGGATGCGGAGAGAGATTTTGCTGGGGGCTATCAGAACG
CCGCTGTGCAGGGCCTGAAACGGCAGTCTGAGGAACTCGAACGAAGGTTA
CGAGAGGCATTAAAGAGCAAAGAATCTCTTGCGGTGGAGAAGAGCACTCT
TCAGAAATCAATTGATTCTCTGCAGACTAAGATGAAGAGAGGTGCTTCCA
CTTTCTCGTTTGGTAAGAAGGATGCTGATGTCGTTTACAGACCGGTACCG
AGTAGCTCCAATGAAGGCCAGACTTGGGTTGGAACGCTCACTCTTTGCAT
TCTTTCAGTGTGCACCGGTGCGGTGCTGGTTTTTTTGTTGTCAAATTGGC
AACAGAATAAGGAGATTGAAACACCAGTTGGTGTGGACAAGTATGGATTT
TCTCCGTCTTCTTCTGCCACCACGCCAGGGTTTAATCGAACCAGCGTTTC
ACCATTGCAATATGTGAACAGCGCAAATTCAAAGACGCCAGCTTCAATAG
GAAGCACTCCTCGAAGATACTGA
back to top

Coding sequence (CDS) from alignment at tig00004370_pilon:111707..112879-

>Gchil8917.t1 ID=Gchil8917.t1|Name=Gchil8917.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1173bp|location=Sequence derived from alignment at tig00004370_pilon:111707..112879- (Gracilaria chilensis NLEC103_M9 male)
ATGACGCGCTTGTTCGCTCCCCTTTTGCTCTGCTCAATTGTGCTGCTCAC
CGCCAGCGGTGAACAGGTGATCACCAAATCCAGTGAGACCATAGCTATCA
AAAATAAGCTCGACACCGCACAGGGAAAAGTCAGTGATCTCATCTCGCGT
CTTGACTCTGTGTCGGACGATGCCACACGCGCAAAAAATGAGATTCATTC
CACGCTAGTTGAGGTGTGGAAGATCGCCGACATGCTGGGTCAAGATCGCT
GCGGAGAGGTGGTTGAAAAGTTTCGCGCTGAGAAACAGAAGGCGCAAAAC
AAAATCACTGAATTGCAGGAGGAGCTTAACTCCCATCTCAAGGATACAGA
GGCGTTGAAATTGACTGTAGTCAAGCTGCAGGAGGCGAACACTGGCCTGC
AGACGGAGATCAAGACGGAAAGATCCAGACGCGATGGTTTAGAGATTGAG
ACTAGAGAACTTCGGGATAAGTTGCACTGGGCGAATGCAGTGGCCAATGA
GACTCACAAGTATGAACTGGTTGCCGAAAGACTGCAAAGCCTTCATGTTG
TTGTCAATGAGCGCACCCAACTTTTGAAACGTATTGAAAGTATGGTGTCT
GAATCTCATCATGGCTCTGCGGAATGGCTTGGTGAGATTGAATCGCTTAC
CAATATCATCAGGGATGCGGAGAGAGATTTTGCTGGGGGCTATCAGAACG
CCGCTGTGCAGGGCCTGAAACGGCAGTCTGAGGAACTCGAACGAAGGTTA
CGAGAGGCATTAAAGAGCAAAGAATCTCTTGCGGTGGAGAAGAGCACTCT
TCAGAAATCAATTGATTCTCTGCAGACTAAGATGAAGAGAGGTGCTTCCA
CTTTCTCGTTTGGTAAGAAGGATGCTGATGTCGTTTACAGACCGGTACCG
AGTAGCTCCAATGAAGGCCAGACTTGGGTTGGAACGCTCACTCTTTGCAT
TCTTTCAGTGTGCACCGGTGCGGTGCTGGTTTTTTTGTTGTCAAATTGGC
AACAGAATAAGGAGATTGAAACACCAGTTGGTGTGGACAAGTATGGATTT
TCTCCGTCTTCTTCTGCCACCACGCCAGGGTTTAATCGAACCAGCGTTTC
ACCATTGCAATATGTGAACAGCGCAAATTCAAAGACGCCAGCTTCAATAG
GAAGCACTCCTCGAAGATACTGA
back to top