Gchil8911.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8911.t1
Unique NameGchil8911.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length435
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:55138..56753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8911Gchil8911Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 55138..56753 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8911.t1Gchil8911.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 55138..56753 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8911.t1.start1Gchil8911.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 55138..55140 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8911.t1.CDS1Gchil8911.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 55138..55400 +
Gchil8911.t1.CDS2Gchil8911.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 55501..55690 +
Gchil8911.t1.CDS3Gchil8911.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 55797..56142 +
Gchil8911.t1.CDS4Gchil8911.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 56248..56753 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8911.t1.exon1Gchil8911.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 55138..55400 +
Gchil8911.t1.exon2Gchil8911.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 55501..55690 +
Gchil8911.t1.exon3Gchil8911.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 55797..56142 +
Gchil8911.t1.exon4Gchil8911.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 56248..56753 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8911.t1.intron1Gchil8911.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 55401..55500 +
Gchil8911.t1.intron2Gchil8911.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 55691..55796 +
Gchil8911.t1.intron3Gchil8911.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 56143..56247 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8911.t1.stop1Gchil8911.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 56751..56753 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8911.t1 ID=Gchil8911.t1|Name=Gchil8911.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=435bp
MWEMTTGTRQAAGRRTAGQETTNDTVRQTIVKTIEAPRLEGIQTIDFVDF
KRNCEVYSPRVAEKNSAAIVKIPLTSLHNSIEKKMLEMSITSAVSKKRLF
DLKLERAARKRTLESQVWDLFLKYGTVLGYLGYDKFKENHPKLAVKHILR
CAAKIEYHNSPKRLKPSKSKMEAFQEDNCQPLPALLVDHRRDADHRAVDK
EATWVSDDPPPRPGGMKALALAPEYLNPKCKGKSFVNDCPTTSSDEEKKF
KAEYMERKRIHQENAAHTGAAAKFISRVTLENIRAADVHLSAKDLKKPMT
FRNGGNSSVPLTSDRAMQANVRLGIHHGANFMLCGIKWLICEDISDFVYI
DRHVMSSLGLNNQEILAAACGRLQGEVEVPSSLTKDGNQDDALANRLSQP
ALHGMLRGRGYDLGSTYHSFGVQSMIGWTSQMRT*
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spliced messenger RNA

>Gchil8911.t1 ID=Gchil8911.t1|Name=Gchil8911.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00004370_pilon:55138..56753+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGAAATGACTACTGGAACTCGTCAAGCTGCTGGTCGCCGCACGGC
AGGCCAAGAGACCACGAATGATACTGTGCGTCAAACCATTGTCAAGACCA
TTGAGGCGCCTCGACTCGAAGGCATCCAGACTATTGACTTTGTTGATTTC
AAACGCAATTGTGAGGTGTACAGCCCCCGCGTGGCTGAGAAAAATTCCGC
TGCCATTGTCAAGATACCTTTGACTTCGCTCCATAACTCCATCGAGAAGA
AAATGCTGGAGATGAGTATAACCTCTGCCGTATCGAAGAAGAGATTGTTC
GACTTGAAGCTTGAAAGAGCCGCCCGCAAGAGGACCTTGGAATCCCAGGT
GTGGGATCTTTTCTTGAAGTACGGCACTGTACTCGGGTACCTTGGCTACG
ACAAGTTCAAAGAGAACCACCCGAAGCTGGCTGTGAAGCACATTCTCCGT
TGTGCGGCCAAAATTGAATATCACAATAGCCCCAAGCGTTTAAAGCCATC
CAAATCCAAGATGGAGGCGTTTCAAGAGGACAATTGTCAGCCCCTCCCGG
CGCTTCTTGTCGACCACCGCCGTGACGCAGATCACCGGGCTGTGGACAAG
GAAGCCACGTGGGTCTCTGACGACCCGCCGCCTAGACCTGGCGGTATGAA
GGCGCTCGCGCTAGCTCCGGAATACTTGAACCCGAAGTGCAAGGGTAAAA
GCTTCGTCAACGACTGTCCGACTACCTCGAGTGATGAAGAGAAGAAGTTC
AAGGCTGAGTACATGGAACGAAAACGCATCCATCAAGAGAACGCTGCACA
CACGGGTGCAGCCGCGAAATTCATCTCTCGAGTGACTCTGGAGAACATCC
GTGCTGCAGATGTGCACCTGTCAGCAAAGGATCTCAAGAAGCCGATGACT
TTCCGGAACGGTGGCAATTCTTCCGTCCCTTTGACAAGCGATCGCGCGAT
GCAAGCCAACGTCAGACTTGGCATCCACCACGGAGCAAACTTCATGCTTT
GCGGCATCAAGTGGCTGATCTGTGAGGACATCTCTGACTTCGTCTACATC
GACCGACATGTTATGTCCTCGCTGGGCCTGAACAACCAAGAGATACTCGC
CGCAGCGTGTGGCCGTTTACAGGGAGAAGTAGAGGTTCCTTCATCGCTGA
CAAAGGACGGCAATCAGGATGATGCTCTCGCCAACAGGCTTTCCCAACCG
GCTCTTCACGGCATGCTGCGTGGTAGGGGCTATGATCTGGGCAGCACGTA
CCACAGCTTTGGGGTACAAAGTATGATTGGTTGGACATCGCAGATGCGTA
CATAG
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protein sequence of Gchil8911.t1

>Gchil8911.t1 ID=Gchil8911.t1|Name=Gchil8911.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=435bp
MWEMTTGTRQAAGRRTAGQETTNDTVRQTIVKTIEAPRLEGIQTIDFVDF
KRNCEVYSPRVAEKNSAAIVKIPLTSLHNSIEKKMLEMSITSAVSKKRLF
DLKLERAARKRTLESQVWDLFLKYGTVLGYLGYDKFKENHPKLAVKHILR
CAAKIEYHNSPKRLKPSKSKMEAFQEDNCQPLPALLVDHRRDADHRAVDK
EATWVSDDPPPRPGGMKALALAPEYLNPKCKGKSFVNDCPTTSSDEEKKF
KAEYMERKRIHQENAAHTGAAAKFISRVTLENIRAADVHLSAKDLKKPMT
FRNGGNSSVPLTSDRAMQANVRLGIHHGANFMLCGIKWLICEDISDFVYI
DRHVMSSLGLNNQEILAAACGRLQGEVEVPSSLTKDGNQDDALANRLSQP
ALHGMLRGRGYDLGSTYHSFGVQSMIGWTSQMRT*
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mRNA from alignment at tig00004370_pilon:55138..56753+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8911.t1 ID=Gchil8911.t1|Name=Gchil8911.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1616bp|location=Sequence derived from alignment at tig00004370_pilon:55138..56753+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGGGAAATGACTACTGGAACTCGTCAAGCTGCTGGTCGCCGCACGGC
AGGCCAAGAGACCACGAATGATACTGTGCGTCAAACCATTGTCAAGACCA
TTGAGGCGCCTCGACTCGAAGGCATCCAGACTATTGACTTTGTTGATTTC
AAACGCAATTGTGAGGTGTACAGCCCCCGCGTGGCTGAGAAAAATTCCGC
TGCCATTGTCAAGATACCTTTGACTTCGCTCCATAACTCCATCGAGAAGA
AAATGCTGGAGATGTTCGTTCTTGCTGACTGGATACCCGCTTCATCGCTC
GATGACATGACGTAGGAAATGTTGCAAACGTTTGTCGATGCAAGGTCTTA
CTTTGAGACGCAGGAGTATAACCTCTGCCGTATCGAAGAAGAGATTGTTC
GACTTGAAGCTTGAAAGAGCCGCCCGCAAGAGGACCTTGGAATCCCAGGT
GTGGGATCTTTTCTTGAAGTACGGCACTGTACTCGGGTACCTTGGCTACG
ACAAGTTCAAAGAGAACCACCCGAAGCTGGCTGTGAAGCACATTCTCCGT
TGTGTCGCCCATCCCTTTGTGAAGAAGGGCATGATCATGTTCATTGAAAC
GAGGAAGAAAGAAGAGTTTGAAAAGCATTTCATGAATTTCACCAACTCTT
GCGTAACAGGCGGCCAAAATTGAATATCACAATAGCCCCAAGCGTTTAAA
GCCATCCAAATCCAAGATGGAGGCGTTTCAAGAGGACAATTGTCAGCCCC
TCCCGGCGCTTCTTGTCGACCACCGCCGTGACGCAGATCACCGGGCTGTG
GACAAGGAAGCCACGTGGGTCTCTGACGACCCGCCGCCTAGACCTGGCGG
TATGAAGGCGCTCGCGCTAGCTCCGGAATACTTGAACCCGAAGTGCAAGG
GTAAAAGCTTCGTCAACGACTGTCCGACTACCTCGAGTGATGAAGAGAAG
AAGTTCAAGGCTGAGTACATGGAACGAAAACGCATCCATCAAGAGAACGC
TGCACGTGGGGATAATGTTATTGGAAAGTTGACCTCTGATTGAGTTCGAA
AGAACTCTTCGATATTTTCTGAATCATTCTTTGACGCCGTCCGGGTGCTG
GCAATCGCAGACACGGGTGCAGCCGCGAAATTCATCTCTCGAGTGACTCT
GGAGAACATCCGTGCTGCAGATGTGCACCTGTCAGCAAAGGATCTCAAGA
AGCCGATGACTTTCCGGAACGGTGGCAATTCTTCCGTCCCTTTGACAAGC
GATCGCGCGATGCAAGCCAACGTCAGACTTGGCATCCACCACGGAGCAAA
CTTCATGCTTTGCGGCATCAAGTGGCTGATCTGTGAGGACATCTCTGACT
TCGTCTACATCGACCGACATGTTATGTCCTCGCTGGGCCTGAACAACCAA
GAGATACTCGCCGCAGCGTGTGGCCGTTTACAGGGAGAAGTAGAGGTTCC
TTCATCGCTGACAAAGGACGGCAATCAGGATGATGCTCTCGCCAACAGGC
TTTCCCAACCGGCTCTTCACGGCATGCTGCGTGGTAGGGGCTATGATCTG
GGCAGCACGTACCACAGCTTTGGGGTACAAAGTATGATTGGTTGGACATC
GCAGATGCGTACATAG
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Coding sequence (CDS) from alignment at tig00004370_pilon:55138..56753+

>Gchil8911.t1 ID=Gchil8911.t1|Name=Gchil8911.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1305bp|location=Sequence derived from alignment at tig00004370_pilon:55138..56753+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGGGAAATGACTACTGGAACTCGTCAAGCTGCTGGTCGCCGCACGGC
AGGCCAAGAGACCACGAATGATACTGTGCGTCAAACCATTGTCAAGACCA
TTGAGGCGCCTCGACTCGAAGGCATCCAGACTATTGACTTTGTTGATTTC
AAACGCAATTGTGAGGTGTACAGCCCCCGCGTGGCTGAGAAAAATTCCGC
TGCCATTGTCAAGATACCTTTGACTTCGCTCCATAACTCCATCGAGAAGA
AAATGCTGGAGATGAGTATAACCTCTGCCGTATCGAAGAAGAGATTGTTC
GACTTGAAGCTTGAAAGAGCCGCCCGCAAGAGGACCTTGGAATCCCAGGT
GTGGGATCTTTTCTTGAAGTACGGCACTGTACTCGGGTACCTTGGCTACG
ACAAGTTCAAAGAGAACCACCCGAAGCTGGCTGTGAAGCACATTCTCCGT
TGTGCGGCCAAAATTGAATATCACAATAGCCCCAAGCGTTTAAAGCCATC
CAAATCCAAGATGGAGGCGTTTCAAGAGGACAATTGTCAGCCCCTCCCGG
CGCTTCTTGTCGACCACCGCCGTGACGCAGATCACCGGGCTGTGGACAAG
GAAGCCACGTGGGTCTCTGACGACCCGCCGCCTAGACCTGGCGGTATGAA
GGCGCTCGCGCTAGCTCCGGAATACTTGAACCCGAAGTGCAAGGGTAAAA
GCTTCGTCAACGACTGTCCGACTACCTCGAGTGATGAAGAGAAGAAGTTC
AAGGCTGAGTACATGGAACGAAAACGCATCCATCAAGAGAACGCTGCACA
CACGGGTGCAGCCGCGAAATTCATCTCTCGAGTGACTCTGGAGAACATCC
GTGCTGCAGATGTGCACCTGTCAGCAAAGGATCTCAAGAAGCCGATGACT
TTCCGGAACGGTGGCAATTCTTCCGTCCCTTTGACAAGCGATCGCGCGAT
GCAAGCCAACGTCAGACTTGGCATCCACCACGGAGCAAACTTCATGCTTT
GCGGCATCAAGTGGCTGATCTGTGAGGACATCTCTGACTTCGTCTACATC
GACCGACATGTTATGTCCTCGCTGGGCCTGAACAACCAAGAGATACTCGC
CGCAGCGTGTGGCCGTTTACAGGGAGAAGTAGAGGTTCCTTCATCGCTGA
CAAAGGACGGCAATCAGGATGATGCTCTCGCCAACAGGCTTTCCCAACCG
GCTCTTCACGGCATGCTGCGTGGTAGGGGCTATGATCTGGGCAGCACGTA
CCACAGCTTTGGGGTACAAAGTATGATTGGTTGGACATCGCAGATGCGTA
CATAG
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