Gchil889.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil889.t1
Unique NameGchil889.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length167
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:901256..901756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog697282.Mettu_2332
PFAMsCupin_5
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K09705
Evalue2.4e-41
EggNOG OGsCOG3542@1|root,COG3542@2|Bacteria,1RHBE@1224|Proteobacteria,1S7ED@1236|Gammaproteobacteria
DescriptionCupin superfamily (DUF985)
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil889Gchil889Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 901256..901756 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil889.t1.start1Gchil889.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 901256..901258 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil889.t1.CDS1Gchil889.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 901256..901756 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil889.t1.exon1Gchil889.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 901256..901756 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil889.t1.stop1Gchil889.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 901754..901756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil889.t1Gchil889.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 901256..901756 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil889.t1 ID=Gchil889.t1|Name=Gchil889.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=167bp
MAESNEKNQLMEALQLQRHVEGGFYRRTYASKTTFQRAEDNKERPLMTTI
FYMITDSHRGPYMVENASDLMRFFHMGSPVAIYMVDQEGKLTTTVMGTDF
ENGQVLQLLFKGGSWAGAVLEEGEYCLLSEAVAPGFDYEDMRMIRRDEVQ
QKFPHLVDRIAHLLIE*
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spliced messenger RNA

>Gchil889.t1 ID=Gchil889.t1|Name=Gchil889.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=501bp|location=Sequence derived from alignment at tig00000017_pilon:901256..901756+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGAATCCAACGAAAAAAACCAATTGATGGAAGCACTTCAACTGCA
ACGCCATGTGGAAGGCGGCTTCTACCGCCGAACATACGCCTCAAAAACAA
CATTCCAACGTGCGGAAGACAACAAGGAGCGACCGTTAATGACAACCATC
TTCTACATGATAACTGACAGTCACAGAGGTCCTTATATGGTCGAAAATGC
CTCGGATTTAATGCGATTCTTTCACATGGGCTCCCCAGTTGCGATATACA
TGGTGGACCAGGAAGGAAAGTTGACAACCACCGTGATGGGAACTGATTTC
GAAAACGGCCAGGTTCTACAATTGTTATTTAAGGGAGGAAGCTGGGCGGG
AGCAGTTCTAGAAGAAGGCGAGTACTGCTTGCTATCAGAGGCTGTGGCAC
CGGGTTTCGACTATGAGGATATGAGAATGATCCGTCGCGACGAGGTTCAG
CAAAAGTTCCCGCATCTTGTCGATCGTATTGCACATTTATTGATCGAATG
A
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protein sequence of Gchil889.t1

>Gchil889.t1 ID=Gchil889.t1|Name=Gchil889.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=167bp
MAESNEKNQLMEALQLQRHVEGGFYRRTYASKTTFQRAEDNKERPLMTTI
FYMITDSHRGPYMVENASDLMRFFHMGSPVAIYMVDQEGKLTTTVMGTDF
ENGQVLQLLFKGGSWAGAVLEEGEYCLLSEAVAPGFDYEDMRMIRRDEVQ
QKFPHLVDRIAHLLIE*
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mRNA from alignment at tig00000017_pilon:901256..901756+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil889.t1 ID=Gchil889.t1|Name=Gchil889.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=501bp|location=Sequence derived from alignment at tig00000017_pilon:901256..901756+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGAATCCAACGAAAAAAACCAATTGATGGAAGCACTTCAACTGCA
ACGCCATGTGGAAGGCGGCTTCTACCGCCGAACATACGCCTCAAAAACAA
CATTCCAACGTGCGGAAGACAACAAGGAGCGACCGTTAATGACAACCATC
TTCTACATGATAACTGACAGTCACAGAGGTCCTTATATGGTCGAAAATGC
CTCGGATTTAATGCGATTCTTTCACATGGGCTCCCCAGTTGCGATATACA
TGGTGGACCAGGAAGGAAAGTTGACAACCACCGTGATGGGAACTGATTTC
GAAAACGGCCAGGTTCTACAATTGTTATTTAAGGGAGGAAGCTGGGCGGG
AGCAGTTCTAGAAGAAGGCGAGTACTGCTTGCTATCAGAGGCTGTGGCAC
CGGGTTTCGACTATGAGGATATGAGAATGATCCGTCGCGACGAGGTTCAG
CAAAAGTTCCCGCATCTTGTCGATCGTATTGCACATTTATTGATCGAATG
A
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Coding sequence (CDS) from alignment at tig00000017_pilon:901256..901756+

>Gchil889.t1 ID=Gchil889.t1|Name=Gchil889.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=501bp|location=Sequence derived from alignment at tig00000017_pilon:901256..901756+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGAATCCAACGAAAAAAACCAATTGATGGAAGCACTTCAACTGCA
ACGCCATGTGGAAGGCGGCTTCTACCGCCGAACATACGCCTCAAAAACAA
CATTCCAACGTGCGGAAGACAACAAGGAGCGACCGTTAATGACAACCATC
TTCTACATGATAACTGACAGTCACAGAGGTCCTTATATGGTCGAAAATGC
CTCGGATTTAATGCGATTCTTTCACATGGGCTCCCCAGTTGCGATATACA
TGGTGGACCAGGAAGGAAAGTTGACAACCACCGTGATGGGAACTGATTTC
GAAAACGGCCAGGTTCTACAATTGTTATTTAAGGGAGGAAGCTGGGCGGG
AGCAGTTCTAGAAGAAGGCGAGTACTGCTTGCTATCAGAGGCTGTGGCAC
CGGGTTTCGACTATGAGGATATGAGAATGATCCGTCGCGACGAGGTTCAG
CAAAAGTTCCCGCATCTTGTCGATCGTATTGCACATTTATTGATCGAATG
A
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