Gchil8867.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8867.t1
Unique NameGchil8867.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length220
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:70553..71212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_01872T0
Preferred namePSF3
PFAMsSld5
Max annot lvl4751|Fungi
KEGG koko:K10734
KEGG ModuleM00286
GOsGO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000727,GO:0000785,GO:0000790,GO:0000811,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0022402,GO:0031261,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044786,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071162,GO:0071704,GO:0090304,GO:1901360,GO:1901576,GO:1902292,GO:1902315,GO:1902969,GO:1902975,GO:1903047
Evalue2.37e-23
EggNOG OGsCOG5138@1|root,KOG1106@2759|Eukaryota,3A050@33154|Opisthokonta,3P24V@4751|Fungi
DescriptionDna replication complex gins protein psf3
COG categoryL
BRITEko00000,ko00002,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8867Gchil8867Gracilaria chilensis NLEC103_M9 malegenetig00000120_pilon 70553..71212 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8867.t1.stop1Gchil8867.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000120_pilon 70553..70555 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8867.t1.CDS1Gchil8867.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000120_pilon 70553..71212 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8867.t1.exon1Gchil8867.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000120_pilon 70553..71212 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8867.t1.start1Gchil8867.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000120_pilon 71210..71212 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8867.t1Gchil8867.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000120_pilon 70553..71212 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8867.t1 ID=Gchil8867.t1|Name=Gchil8867.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=220bp
MEDYFSIDDILAGDHRIFTTFRHQGYNIGYLDPMGVTEWNASHRAPEELE
DNPNIDKDMPKGMRVALPFWLAESLISRNFVNIELPRCYGKQAMQSLRVD
TCSVNLAAKCGTYFALGVRLAKLVVDVALPGALARAFAARCWGITDSAAF
SGDRGAQAMRGLDWLECDLFQEAHAMAVATRRWKERRGDRISALDSVLGK
RPREELGSPISPSTRPRTS*
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spliced messenger RNA

>Gchil8867.t1 ID=Gchil8867.t1|Name=Gchil8867.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=660bp|location=Sequence derived from alignment at tig00000120_pilon:70553..71212- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGACTACTTTTCAATCGATGATATTCTTGCAGGCGATCATCGTAT
CTTCACAACTTTCCGTCATCAAGGGTATAACATCGGGTACCTTGATCCTA
TGGGTGTTACGGAATGGAATGCCTCTCATCGAGCCCCAGAAGAATTGGAG
GATAATCCCAACATTGACAAGGATATGCCGAAAGGTATGCGAGTAGCACT
GCCTTTCTGGCTCGCTGAGTCTCTTATATCCCGTAACTTTGTAAACATCG
AGCTTCCAAGATGCTATGGGAAGCAAGCCATGCAATCCCTTCGCGTTGAC
ACATGTTCAGTGAATCTCGCAGCGAAGTGCGGCACGTACTTCGCTTTGGG
TGTTCGCCTCGCGAAATTAGTTGTCGATGTTGCATTACCAGGAGCTCTCG
CCCGAGCATTCGCGGCCCGTTGCTGGGGAATTACAGACTCTGCAGCCTTC
TCGGGTGATAGAGGGGCGCAAGCGATGAGAGGGCTCGACTGGCTGGAATG
TGACCTTTTTCAAGAGGCACACGCAATGGCAGTTGCTACCAGAAGATGGA
AGGAACGGCGTGGTGATAGAATTTCTGCCTTGGATTCTGTACTTGGCAAG
AGACCACGGGAAGAACTCGGCAGTCCAATATCACCATCGACCCGTCCAAG
AACAAGTTAG
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protein sequence of Gchil8867.t1

>Gchil8867.t1 ID=Gchil8867.t1|Name=Gchil8867.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=220bp
MEDYFSIDDILAGDHRIFTTFRHQGYNIGYLDPMGVTEWNASHRAPEELE
DNPNIDKDMPKGMRVALPFWLAESLISRNFVNIELPRCYGKQAMQSLRVD
TCSVNLAAKCGTYFALGVRLAKLVVDVALPGALARAFAARCWGITDSAAF
SGDRGAQAMRGLDWLECDLFQEAHAMAVATRRWKERRGDRISALDSVLGK
RPREELGSPISPSTRPRTS*
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mRNA from alignment at tig00000120_pilon:70553..71212-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8867.t1 ID=Gchil8867.t1|Name=Gchil8867.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=660bp|location=Sequence derived from alignment at tig00000120_pilon:70553..71212- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGACTACTTTTCAATCGATGATATTCTTGCAGGCGATCATCGTAT
CTTCACAACTTTCCGTCATCAAGGGTATAACATCGGGTACCTTGATCCTA
TGGGTGTTACGGAATGGAATGCCTCTCATCGAGCCCCAGAAGAATTGGAG
GATAATCCCAACATTGACAAGGATATGCCGAAAGGTATGCGAGTAGCACT
GCCTTTCTGGCTCGCTGAGTCTCTTATATCCCGTAACTTTGTAAACATCG
AGCTTCCAAGATGCTATGGGAAGCAAGCCATGCAATCCCTTCGCGTTGAC
ACATGTTCAGTGAATCTCGCAGCGAAGTGCGGCACGTACTTCGCTTTGGG
TGTTCGCCTCGCGAAATTAGTTGTCGATGTTGCATTACCAGGAGCTCTCG
CCCGAGCATTCGCGGCCCGTTGCTGGGGAATTACAGACTCTGCAGCCTTC
TCGGGTGATAGAGGGGCGCAAGCGATGAGAGGGCTCGACTGGCTGGAATG
TGACCTTTTTCAAGAGGCACACGCAATGGCAGTTGCTACCAGAAGATGGA
AGGAACGGCGTGGTGATAGAATTTCTGCCTTGGATTCTGTACTTGGCAAG
AGACCACGGGAAGAACTCGGCAGTCCAATATCACCATCGACCCGTCCAAG
AACAAGTTAG
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Coding sequence (CDS) from alignment at tig00000120_pilon:70553..71212-

>Gchil8867.t1 ID=Gchil8867.t1|Name=Gchil8867.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=660bp|location=Sequence derived from alignment at tig00000120_pilon:70553..71212- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGACTACTTTTCAATCGATGATATTCTTGCAGGCGATCATCGTAT
CTTCACAACTTTCCGTCATCAAGGGTATAACATCGGGTACCTTGATCCTA
TGGGTGTTACGGAATGGAATGCCTCTCATCGAGCCCCAGAAGAATTGGAG
GATAATCCCAACATTGACAAGGATATGCCGAAAGGTATGCGAGTAGCACT
GCCTTTCTGGCTCGCTGAGTCTCTTATATCCCGTAACTTTGTAAACATCG
AGCTTCCAAGATGCTATGGGAAGCAAGCCATGCAATCCCTTCGCGTTGAC
ACATGTTCAGTGAATCTCGCAGCGAAGTGCGGCACGTACTTCGCTTTGGG
TGTTCGCCTCGCGAAATTAGTTGTCGATGTTGCATTACCAGGAGCTCTCG
CCCGAGCATTCGCGGCCCGTTGCTGGGGAATTACAGACTCTGCAGCCTTC
TCGGGTGATAGAGGGGCGCAAGCGATGAGAGGGCTCGACTGGCTGGAATG
TGACCTTTTTCAAGAGGCACACGCAATGGCAGTTGCTACCAGAAGATGGA
AGGAACGGCGTGGTGATAGAATTTCTGCCTTGGATTCTGTACTTGGCAAG
AGACCACGGGAAGAACTCGGCAGTCCAATATCACCATCGACCCGTCCAAG
AACAAGTTAG
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