Gchil8863.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8863.t1
Unique NameGchil8863.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length282
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:55792..56754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709020.1
Preferred nameTMBIM4
PFAMsBax1-I
Max annot lvl2759|Eukaryota
KEGG koko:K06890
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0006915,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0008219,GO:0009966,GO:0009987,GO:0010033,GO:0010646,GO:0010941,GO:0012501,GO:0012505,GO:0016020,GO:0016021,GO:0019722,GO:0019932,GO:0023051,GO:0023052,GO:0030176,GO:0030968,GO:0031090,GO:0031224,GO:0031227,GO:0031984,GO:0033554,GO:0034620,GO:0034976,GO:0035556,GO:0035966,GO:0035967,GO:0042175,GO:0042221,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0050848,GO:0050896,GO:0051716,GO:0060548,GO:0065007,GO:0070887,GO:0071310,GO:0098588,GO:0098791,GO:0098827,GO:1902531
Evalue3.61e-71
EggNOG OGsCOG0670@1|root,KOG2322@2759|Eukaryota
Descriptionnegative regulation of Fas signaling pathway
COG categoryA
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8863Gchil8863Gracilaria chilensis NLEC103_M9 malegenetig00000120_pilon 55792..56754 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8863.t1Gchil8863.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000120_pilon 55792..56754 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8863.t1.stop1Gchil8863.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000120_pilon 55792..55794 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8863.t1.CDS1Gchil8863.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000120_pilon 55792..55913 -
Gchil8863.t1.CDS2Gchil8863.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000120_pilon 56031..56754 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8863.t1.exon1Gchil8863.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000120_pilon 55792..55913 -
Gchil8863.t1.exon2Gchil8863.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000120_pilon 56031..56754 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8863.t1.intron1Gchil8863.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000120_pilon 55914..56030 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8863.t1.start1Gchil8863.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000120_pilon 56752..56754 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8863.t1 ID=Gchil8863.t1|Name=Gchil8863.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=282bp
MSVMRDSIDKESMREMPRSAADASRSVNRETKAALSMANKSGSREDYAND
FAYGTSVATCEPIIRLGFIRKVYGILAAQLALTVLICAAFMYIKPLRMLA
VNANGFLLIVSMIGTFGSLFALLAYKDSHPTNLQLLAAFTMFESFLVGSV
CAQYQQSGLGGLVLEALVITLAVFSGITLYAFVSKKDFSFMGGALYAALI
GLLVASFVNLFMGFTGNKSPFLAMLISYGGALLFSLYILYDTSMIMHHLG
PDDAIMGAIMLYLDLLNLFLYILSILSRNRD*
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spliced messenger RNA

>Gchil8863.t1 ID=Gchil8863.t1|Name=Gchil8863.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=846bp|location=Sequence derived from alignment at tig00000120_pilon:55792..56754- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGTCATGCGCGACTCCATTGACAAAGAATCCATGCGGGAGATGCC
ACGCAGCGCTGCCGACGCGTCCCGCAGCGTCAACAGGGAGACCAAAGCTG
CGCTCTCTATGGCGAACAAGTCTGGCTCGAGAGAAGACTACGCGAACGAC
TTTGCCTATGGTACCAGTGTGGCTACTTGCGAGCCCATCATTCGTCTGGG
TTTTATTCGCAAAGTGTACGGCATTCTGGCTGCCCAGCTTGCTCTGACTG
TCCTCATATGTGCCGCTTTCATGTACATCAAGCCATTGCGCATGCTTGCC
GTTAATGCAAATGGTTTTCTTTTAATCGTTTCAATGATAGGAACATTCGG
TTCCTTGTTCGCACTTCTTGCATACAAGGACTCACACCCGACCAATTTGC
AGTTGCTGGCTGCGTTTACAATGTTTGAATCCTTCTTGGTCGGTTCTGTT
TGTGCCCAGTATCAGCAATCTGGACTTGGGGGCTTGGTACTTGAAGCCCT
TGTAATTACGTTGGCTGTGTTTTCTGGGATTACCCTCTACGCCTTCGTTT
CCAAGAAAGACTTTTCGTTCATGGGAGGAGCCTTGTACGCCGCATTGATT
GGTCTTTTGGTTGCCTCTTTTGTCAACCTCTTCATGGGATTCACAGGAAA
CAAGAGCCCGTTCTTGGCTATGCTCATTTCGTACGGAGGGGCTCTCTTAT
TTAGTCTTTACATTCTCTATGACACCTCGATGATCATGCATCACCTTGGA
CCCGATGATGCCATTATGGGCGCCATCATGCTGTACCTAGATCTTCTGAA
TCTGTTTTTGTACATCCTATCAATCCTATCCAGAAACCGAGATTAA
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protein sequence of Gchil8863.t1

>Gchil8863.t1 ID=Gchil8863.t1|Name=Gchil8863.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=282bp
MSVMRDSIDKESMREMPRSAADASRSVNRETKAALSMANKSGSREDYAND
FAYGTSVATCEPIIRLGFIRKVYGILAAQLALTVLICAAFMYIKPLRMLA
VNANGFLLIVSMIGTFGSLFALLAYKDSHPTNLQLLAAFTMFESFLVGSV
CAQYQQSGLGGLVLEALVITLAVFSGITLYAFVSKKDFSFMGGALYAALI
GLLVASFVNLFMGFTGNKSPFLAMLISYGGALLFSLYILYDTSMIMHHLG
PDDAIMGAIMLYLDLLNLFLYILSILSRNRD*
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mRNA from alignment at tig00000120_pilon:55792..56754-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8863.t1 ID=Gchil8863.t1|Name=Gchil8863.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=963bp|location=Sequence derived from alignment at tig00000120_pilon:55792..56754- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGTCATGCGCGACTCCATTGACAAAGAATCCATGCGGGAGATGCC
ACGCAGCGCTGCCGACGCGTCCCGCAGCGTCAACAGGGAGACCAAAGCTG
CGCTCTCTATGGCGAACAAGTCTGGCTCGAGAGAAGACTACGCGAACGAC
TTTGCCTATGGTACCAGTGTGGCTACTTGCGAGCCCATCATTCGTCTGGG
TTTTATTCGCAAAGTGTACGGCATTCTGGCTGCCCAGCTTGCTCTGACTG
TCCTCATATGTGCCGCTTTCATGTACATCAAGCCATTGCGCATGCTTGCC
GTTAATGCAAATGGTTTTCTTTTAATCGTTTCAATGATAGGAACATTCGG
TTCCTTGTTCGCACTTCTTGCATACAAGGACTCACACCCGACCAATTTGC
AGTTGCTGGCTGCGTTTACAATGTTTGAATCCTTCTTGGTCGGTTCTGTT
TGTGCCCAGTATCAGCAATCTGGACTTGGGGGCTTGGTACTTGAAGCCCT
TGTAATTACGTTGGCTGTGTTTTCTGGGATTACCCTCTACGCCTTCGTTT
CCAAGAAAGACTTTTCGTTCATGGGAGGAGCCTTGTACGCCGCATTGATT
GGTCTTTTGGTTGCCTCTTTTGTCAACCTCTTCATGGGATTCACAGGAAA
CAAGAGCCCGTTCTTGGCTATGCTCATTTCGTACGGAGGGGCTCTCTTAT
TTAGTCTTTACATTCTCTATGACAGTAAGTTGGAAACCCATCAAAACTTT
TCTGGTAGCGAAAAATAGTGGAACGGCTTTTTGTCGAGCAAAATTTCTAA
CATACTCTTCTGTTGCGGCGCGTTTTGTCTCAACTGAACAGCCTCGATGA
TCATGCATCACCTTGGACCCGATGATGCCATTATGGGCGCCATCATGCTG
TACCTAGATCTTCTGAATCTGTTTTTGTACATCCTATCAATCCTATCCAG
AAACCGAGATTAA
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Coding sequence (CDS) from alignment at tig00000120_pilon:55792..56754-

>Gchil8863.t1 ID=Gchil8863.t1|Name=Gchil8863.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=846bp|location=Sequence derived from alignment at tig00000120_pilon:55792..56754- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGTCATGCGCGACTCCATTGACAAAGAATCCATGCGGGAGATGCC
ACGCAGCGCTGCCGACGCGTCCCGCAGCGTCAACAGGGAGACCAAAGCTG
CGCTCTCTATGGCGAACAAGTCTGGCTCGAGAGAAGACTACGCGAACGAC
TTTGCCTATGGTACCAGTGTGGCTACTTGCGAGCCCATCATTCGTCTGGG
TTTTATTCGCAAAGTGTACGGCATTCTGGCTGCCCAGCTTGCTCTGACTG
TCCTCATATGTGCCGCTTTCATGTACATCAAGCCATTGCGCATGCTTGCC
GTTAATGCAAATGGTTTTCTTTTAATCGTTTCAATGATAGGAACATTCGG
TTCCTTGTTCGCACTTCTTGCATACAAGGACTCACACCCGACCAATTTGC
AGTTGCTGGCTGCGTTTACAATGTTTGAATCCTTCTTGGTCGGTTCTGTT
TGTGCCCAGTATCAGCAATCTGGACTTGGGGGCTTGGTACTTGAAGCCCT
TGTAATTACGTTGGCTGTGTTTTCTGGGATTACCCTCTACGCCTTCGTTT
CCAAGAAAGACTTTTCGTTCATGGGAGGAGCCTTGTACGCCGCATTGATT
GGTCTTTTGGTTGCCTCTTTTGTCAACCTCTTCATGGGATTCACAGGAAA
CAAGAGCCCGTTCTTGGCTATGCTCATTTCGTACGGAGGGGCTCTCTTAT
TTAGTCTTTACATTCTCTATGACACCTCGATGATCATGCATCACCTTGGA
CCCGATGATGCCATTATGGGCGCCATCATGCTGTACCTAGATCTTCTGAA
TCTGTTTTTGTACATCCTATCAATCCTATCCAGAAACCGAGATTAA
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