Gchil886.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil886.t1
Unique Name	Gchil886.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	379

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000017_pilon	contig	tig00000017_pilon:888546..889682 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4558.Sb04g004760.1
PFAMs	NAM-associated
Max annot lvl	35493\|Streptophyta
Evalue	9.3e-12
EggNOG OGs	2CVBR@1\|root,2RRQN@2759\|Eukaryota,38A82@33090\|Viridiplantae,3GVHY@35493\|Streptophyta,3M3CG@4447\|Liliopsida,3IH4S@38820\|Poales
Description	No apical meristem-associated C-terminal domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil886	Gchil886	Gracilaria chilensis NLEC103_M9 male	gene	tig00000017_pilon 888546..889682 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil886.t1.start1	Gchil886.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000017_pilon 888546..888548 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil886.t1.CDS1	Gchil886.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000017_pilon 888546..889682 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil886.t1.exon1	Gchil886.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000017_pilon 888546..889682 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil886.t1.stop1	Gchil886.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000017_pilon 889680..889682 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil886.t1	Gchil886.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000017_pilon 888546..889682 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000017_pilon:888546..889682+
coding sequence from alignment at tig00000017_pilon:888546..889682+

mRNA sequence

>Gchil886.t1 ID=Gchil886.t1|Name=Gchil886.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=379bp
MTFPYGGGDVLPNGAPLPSVPSLPNPPAARDAVSNHSSTCPTAQTGTPSP
CASAASKTSIPSTPGNAEKNEDTPAGVARAAALLPQGMSVSTAPRTSRTR
GANYTTVDDVLIARSWLSVSEDPISETEQKSNAFFDRTHSVYTTMKDPFS
TDRNYESVKSRVKLLLKECVKLAGCPAPVRRAKPTVVSEGDIIKLATGIY
NNGKMGNIHDPCGRDFRFMEAWKVLKEYPKFTAGFENRRDDTVHTTEDAN
TQAVRQNGTALVLSGELDATTERTERNAKENVKTRPIGRRKAKELQTEEA
TSTKKLHLITVPIDLQRARNGALERYNDILLFSSCTMEGNSAQTKEFFDL
MRSDALSRVRRRIGKEERSVERPNGEQD*

spliced messenger RNA

>Gchil886.t1 ID=Gchil886.t1|Name=Gchil886.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00000017_pilon:888546..889682+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTTTCCATACGGGGGAGGAGATGTCCTTCCAAATGGTGCTCCACT
TCCTTCCGTACCATCACTCCCAAATCCTCCTGCGGCCAGAGATGCTGTTT
CCAATCATTCTAGTACTTGTCCAACGGCACAAACAGGAACGCCGTCACCC
TGTGCATCTGCTGCCTCCAAGACCTCAATTCCTTCTACGCCTGGCAATGC
AGAGAAGAATGAAGATACTCCCGCTGGAGTTGCCAGAGCAGCCGCGTTAT
TGCCTCAAGGTATGTCAGTCTCCACGGCTCCCAGAACGTCAAGAACAAGA
GGGGCAAACTATACCACAGTAGATGATGTTCTCATCGCCCGCTCCTGGTT
GAGCGTGTCGGAGGATCCGATATCAGAAACTGAACAAAAGTCAAATGCGT
TCTTTGACAGAACTCATTCTGTATACACTACCATGAAAGACCCTTTTTCT
ACCGACAGGAACTACGAATCAGTAAAGTCCAGGGTTAAACTTTTGCTAAA
GGAATGCGTCAAGCTTGCAGGCTGCCCAGCTCCTGTGAGACGGGCGAAGC
CAACGGTCGTGAGCGAAGGTGATATTATAAAGCTTGCGACGGGTATTTAT
AACAACGGTAAAATGGGAAATATTCATGATCCGTGTGGTCGGGACTTCAG
ATTTATGGAGGCATGGAAGGTGCTTAAGGAGTACCCCAAGTTTACGGCGG
GATTCGAGAACCGTCGTGACGACACTGTCCATACTACAGAAGATGCAAAC
ACACAAGCAGTGAGACAAAACGGAACAGCACTTGTTTTAAGTGGCGAACT
GGACGCTACCACGGAACGTACGGAGAGAAATGCAAAAGAAAACGTGAAGA
CTCGGCCAATAGGGCGCCGAAAGGCGAAAGAATTACAGACCGAAGAGGCC
ACAAGTACAAAGAAATTGCACCTTATTACAGTTCCAATAGATCTTCAGCG
CGCACGAAATGGAGCTCTGGAGAGGTACAATGACATCCTGCTTTTCTCCA
GCTGTACGATGGAAGGCAACAGCGCACAAACGAAAGAGTTTTTTGATCTG
ATGAGATCAGATGCTTTGTCAAGGGTTCGCAGACGCATTGGAAAGGAAGA
GCGATCAGTCGAGCGTCCAAATGGAGAACAAGACTAA

protein sequence of Gchil886.t1

>Gchil886.t1 ID=Gchil886.t1|Name=Gchil886.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=379bp
MTFPYGGGDVLPNGAPLPSVPSLPNPPAARDAVSNHSSTCPTAQTGTPSP
CASAASKTSIPSTPGNAEKNEDTPAGVARAAALLPQGMSVSTAPRTSRTR
GANYTTVDDVLIARSWLSVSEDPISETEQKSNAFFDRTHSVYTTMKDPFS
TDRNYESVKSRVKLLLKECVKLAGCPAPVRRAKPTVVSEGDIIKLATGIY
NNGKMGNIHDPCGRDFRFMEAWKVLKEYPKFTAGFENRRDDTVHTTEDAN
TQAVRQNGTALVLSGELDATTERTERNAKENVKTRPIGRRKAKELQTEEA
TSTKKLHLITVPIDLQRARNGALERYNDILLFSSCTMEGNSAQTKEFFDL
MRSDALSRVRRRIGKEERSVERPNGEQD*

mRNA from alignment at tig00000017_pilon:888546..889682+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil886.t1 ID=Gchil886.t1|Name=Gchil886.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00000017_pilon:888546..889682+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGTTTCCATACGGGGGAGGAGATGTCCTTCCAAATGGTGCTCCACT
TCCTTCCGTACCATCACTCCCAAATCCTCCTGCGGCCAGAGATGCTGTTT
CCAATCATTCTAGTACTTGTCCAACGGCACAAACAGGAACGCCGTCACCC
TGTGCATCTGCTGCCTCCAAGACCTCAATTCCTTCTACGCCTGGCAATGC
AGAGAAGAATGAAGATACTCCCGCTGGAGTTGCCAGAGCAGCCGCGTTAT
TGCCTCAAGGTATGTCAGTCTCCACGGCTCCCAGAACGTCAAGAACAAGA
GGGGCAAACTATACCACAGTAGATGATGTTCTCATCGCCCGCTCCTGGTT
GAGCGTGTCGGAGGATCCGATATCAGAAACTGAACAAAAGTCAAATGCGT
TCTTTGACAGAACTCATTCTGTATACACTACCATGAAAGACCCTTTTTCT
ACCGACAGGAACTACGAATCAGTAAAGTCCAGGGTTAAACTTTTGCTAAA
GGAATGCGTCAAGCTTGCAGGCTGCCCAGCTCCTGTGAGACGGGCGAAGC
CAACGGTCGTGAGCGAAGGTGATATTATAAAGCTTGCGACGGGTATTTAT
AACAACGGTAAAATGGGAAATATTCATGATCCGTGTGGTCGGGACTTCAG
ATTTATGGAGGCATGGAAGGTGCTTAAGGAGTACCCCAAGTTTACGGCGG
GATTCGAGAACCGTCGTGACGACACTGTCCATACTACAGAAGATGCAAAC
ACACAAGCAGTGAGACAAAACGGAACAGCACTTGTTTTAAGTGGCGAACT
GGACGCTACCACGGAACGTACGGAGAGAAATGCAAAAGAAAACGTGAAGA
CTCGGCCAATAGGGCGCCGAAAGGCGAAAGAATTACAGACCGAAGAGGCC
ACAAGTACAAAGAAATTGCACCTTATTACAGTTCCAATAGATCTTCAGCG
CGCACGAAATGGAGCTCTGGAGAGGTACAATGACATCCTGCTTTTCTCCA
GCTGTACGATGGAAGGCAACAGCGCACAAACGAAAGAGTTTTTTGATCTG
ATGAGATCAGATGCTTTGTCAAGGGTTCGCAGACGCATTGGAAAGGAAGA
GCGATCAGTCGAGCGTCCAAATGGAGAACAAGACTAA

Coding sequence (CDS) from alignment at tig00000017_pilon:888546..889682+

>Gchil886.t1 ID=Gchil886.t1|Name=Gchil886.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1137bp|location=Sequence derived from alignment at tig00000017_pilon:888546..889682+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGTTTCCATACGGGGGAGGAGATGTCCTTCCAAATGGTGCTCCACT
TCCTTCCGTACCATCACTCCCAAATCCTCCTGCGGCCAGAGATGCTGTTT
CCAATCATTCTAGTACTTGTCCAACGGCACAAACAGGAACGCCGTCACCC
TGTGCATCTGCTGCCTCCAAGACCTCAATTCCTTCTACGCCTGGCAATGC
AGAGAAGAATGAAGATACTCCCGCTGGAGTTGCCAGAGCAGCCGCGTTAT
TGCCTCAAGGTATGTCAGTCTCCACGGCTCCCAGAACGTCAAGAACAAGA
GGGGCAAACTATACCACAGTAGATGATGTTCTCATCGCCCGCTCCTGGTT
GAGCGTGTCGGAGGATCCGATATCAGAAACTGAACAAAAGTCAAATGCGT
TCTTTGACAGAACTCATTCTGTATACACTACCATGAAAGACCCTTTTTCT
ACCGACAGGAACTACGAATCAGTAAAGTCCAGGGTTAAACTTTTGCTAAA
GGAATGCGTCAAGCTTGCAGGCTGCCCAGCTCCTGTGAGACGGGCGAAGC
CAACGGTCGTGAGCGAAGGTGATATTATAAAGCTTGCGACGGGTATTTAT
AACAACGGTAAAATGGGAAATATTCATGATCCGTGTGGTCGGGACTTCAG
ATTTATGGAGGCATGGAAGGTGCTTAAGGAGTACCCCAAGTTTACGGCGG
GATTCGAGAACCGTCGTGACGACACTGTCCATACTACAGAAGATGCAAAC
ACACAAGCAGTGAGACAAAACGGAACAGCACTTGTTTTAAGTGGCGAACT
GGACGCTACCACGGAACGTACGGAGAGAAATGCAAAAGAAAACGTGAAGA
CTCGGCCAATAGGGCGCCGAAAGGCGAAAGAATTACAGACCGAAGAGGCC
ACAAGTACAAAGAAATTGCACCTTATTACAGTTCCAATAGATCTTCAGCG
CGCACGAAATGGAGCTCTGGAGAGGTACAATGACATCCTGCTTTTCTCCA
GCTGTACGATGGAAGGCAACAGCGCACAAACGAAAGAGTTTTTTGATCTG
ATGAGATCAGATGCTTTGTCAAGGGTTCGCAGACGCATTGGAAAGGAAGA
GCGATCAGTCGAGCGTCCAAATGGAGAACAAGACTAA