Gchil8855.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8855.t1
Unique NameGchil8855.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length472
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:35627..37042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002504529.1
PFAMsS4,tRNA-synt_1b
Max annot lvl3041|Chlorophyta
KEGG rclassRC00055,RC00523
KEGG koko:K01866
KEGG ReactionR02918
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Evalue6.25e-173
EggNOG OGsCOG0162@1|root,KOG2623@2759|Eukaryota,37RBV@33090|Viridiplantae,34JUU@3041|Chlorophyta
EC6.1.1.1
DescriptionTyrosyl-Trna Synthetase
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8855Gchil8855Gracilaria chilensis NLEC103_M9 malegenetig00000120_pilon 35627..37042 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8855.t1.stop1Gchil8855.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000120_pilon 35627..35629 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8855.t1.CDS1Gchil8855.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000120_pilon 35627..37042 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8855.t1.exon1Gchil8855.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000120_pilon 35627..37042 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8855.t1.start1Gchil8855.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000120_pilon 37040..37042 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8855.t1Gchil8855.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000120_pilon 35627..37042 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8855.t1 ID=Gchil8855.t1|Name=Gchil8855.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=472bp
MRRPVAFARCAQLFTARSSAPRARFAACARLPPKRPVVMPNVIDVLQKRG
LLDACTAESYVVKTLCEKPITVYTGFDPTADSLHLGNLLAILTLAWFQRC
GHRVVALLGGATARVGDPSGKSVERPVLDDETIRRNLNGIEANLNQILQR
SERHLQQAGMANQPFVIANNYDWLGQISFLHFLRDVGKYARVNTMIAKDS
VKTRLASDDGISFTEFTYQLLQAFDFVHLSDSLNCVMQLGGSDQWGNITA
GTELARKIRSKILHGITFPLLTTADGKKFGKSENGAVWLSKEKLSPYQFY
QFLIRTTDEDVITLLKRLTFLALEEIENIEQQMKFPHYVPNTAQKRLAEE
VTRIVHGDEGVKSALAATAAAAPGSSAVLSVEALEAIASDMPSASFGAEE
IVGIGVVDLMVKGGLQKSKGEARRLIRNGGGYLNNEKITDERAVLESNDL
VGGKLALLAAGKKNKLLVRVK*
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spliced messenger RNA

>Gchil8855.t1 ID=Gchil8855.t1|Name=Gchil8855.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1416bp|location=Sequence derived from alignment at tig00000120_pilon:35627..37042- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCGCCCTGTTGCCTTTGCTCGATGCGCGCAGCTGTTCACGGCTCG
CTCATCTGCCCCGCGTGCAAGATTCGCCGCGTGTGCGCGACTGCCGCCGA
AGCGGCCCGTTGTTATGCCGAATGTGATTGATGTACTGCAGAAAAGAGGA
CTGTTGGACGCCTGCACCGCGGAGTCTTATGTTGTGAAAACGCTGTGTGA
GAAGCCTATCACCGTGTATACTGGGTTCGACCCCACAGCCGATTCTCTGC
ATTTGGGGAATCTGTTGGCCATTTTGACACTGGCTTGGTTTCAGAGATGC
GGCCATCGAGTTGTTGCTCTCCTTGGAGGCGCCACGGCCAGAGTTGGCGA
CCCAAGTGGAAAGAGTGTTGAACGGCCTGTTTTGGACGATGAGACCATAC
GACGCAACCTGAACGGTATCGAAGCCAATTTGAACCAGATTTTACAACGG
TCGGAGAGACACCTTCAGCAGGCTGGTATGGCCAACCAGCCGTTTGTCAT
TGCGAATAACTACGACTGGTTGGGACAGATTTCATTTTTGCACTTTCTAC
GTGACGTTGGAAAATATGCGCGCGTCAACACCATGATTGCGAAAGATTCG
GTCAAGACCAGACTTGCAAGTGATGACGGTATAAGTTTCACTGAGTTTAC
GTATCAGCTGTTGCAGGCATTTGACTTCGTGCATTTGAGCGATAGTCTTA
ACTGTGTTATGCAACTTGGAGGTTCAGATCAGTGGGGGAATATTACTGCT
GGAACCGAACTCGCTAGAAAGATTCGATCTAAGATCTTGCATGGAATCAC
ATTTCCGCTGCTTACCACTGCTGATGGTAAGAAATTTGGAAAGAGTGAAA
ATGGGGCTGTGTGGCTTTCGAAGGAGAAACTATCTCCATATCAGTTCTAC
CAATTTTTGATCCGCACTACGGATGAGGATGTCATCACCCTTTTGAAGCG
GTTAACGTTCTTGGCACTGGAGGAGATTGAAAACATTGAACAGCAGATGA
AGTTTCCCCATTATGTTCCGAACACTGCACAAAAACGACTGGCTGAAGAG
GTTACTCGAATAGTTCACGGGGACGAAGGAGTCAAGTCTGCTTTAGCAGC
CACAGCAGCCGCTGCCCCAGGGAGTAGTGCTGTTCTAAGTGTAGAAGCGC
TAGAAGCAATTGCATCCGACATGCCGAGCGCTAGCTTTGGAGCGGAAGAA
ATTGTCGGGATTGGCGTCGTCGACCTGATGGTGAAAGGAGGTTTGCAGAA
GTCTAAAGGTGAGGCTAGGCGTCTCATCAGAAACGGTGGTGGCTACCTGA
ACAACGAGAAGATTACCGATGAACGTGCCGTGCTTGAAAGCAATGACCTT
GTAGGTGGCAAGCTCGCCCTCTTAGCTGCTGGCAAGAAAAACAAGCTTTT
GGTTCGTGTAAAGTGA
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protein sequence of Gchil8855.t1

>Gchil8855.t1 ID=Gchil8855.t1|Name=Gchil8855.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=472bp
MRRPVAFARCAQLFTARSSAPRARFAACARLPPKRPVVMPNVIDVLQKRG
LLDACTAESYVVKTLCEKPITVYTGFDPTADSLHLGNLLAILTLAWFQRC
GHRVVALLGGATARVGDPSGKSVERPVLDDETIRRNLNGIEANLNQILQR
SERHLQQAGMANQPFVIANNYDWLGQISFLHFLRDVGKYARVNTMIAKDS
VKTRLASDDGISFTEFTYQLLQAFDFVHLSDSLNCVMQLGGSDQWGNITA
GTELARKIRSKILHGITFPLLTTADGKKFGKSENGAVWLSKEKLSPYQFY
QFLIRTTDEDVITLLKRLTFLALEEIENIEQQMKFPHYVPNTAQKRLAEE
VTRIVHGDEGVKSALAATAAAAPGSSAVLSVEALEAIASDMPSASFGAEE
IVGIGVVDLMVKGGLQKSKGEARRLIRNGGGYLNNEKITDERAVLESNDL
VGGKLALLAAGKKNKLLVRVK*
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mRNA from alignment at tig00000120_pilon:35627..37042-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8855.t1 ID=Gchil8855.t1|Name=Gchil8855.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1416bp|location=Sequence derived from alignment at tig00000120_pilon:35627..37042- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCGCCCTGTTGCCTTTGCTCGATGCGCGCAGCTGTTCACGGCTCG
CTCATCTGCCCCGCGTGCAAGATTCGCCGCGTGTGCGCGACTGCCGCCGA
AGCGGCCCGTTGTTATGCCGAATGTGATTGATGTACTGCAGAAAAGAGGA
CTGTTGGACGCCTGCACCGCGGAGTCTTATGTTGTGAAAACGCTGTGTGA
GAAGCCTATCACCGTGTATACTGGGTTCGACCCCACAGCCGATTCTCTGC
ATTTGGGGAATCTGTTGGCCATTTTGACACTGGCTTGGTTTCAGAGATGC
GGCCATCGAGTTGTTGCTCTCCTTGGAGGCGCCACGGCCAGAGTTGGCGA
CCCAAGTGGAAAGAGTGTTGAACGGCCTGTTTTGGACGATGAGACCATAC
GACGCAACCTGAACGGTATCGAAGCCAATTTGAACCAGATTTTACAACGG
TCGGAGAGACACCTTCAGCAGGCTGGTATGGCCAACCAGCCGTTTGTCAT
TGCGAATAACTACGACTGGTTGGGACAGATTTCATTTTTGCACTTTCTAC
GTGACGTTGGAAAATATGCGCGCGTCAACACCATGATTGCGAAAGATTCG
GTCAAGACCAGACTTGCAAGTGATGACGGTATAAGTTTCACTGAGTTTAC
GTATCAGCTGTTGCAGGCATTTGACTTCGTGCATTTGAGCGATAGTCTTA
ACTGTGTTATGCAACTTGGAGGTTCAGATCAGTGGGGGAATATTACTGCT
GGAACCGAACTCGCTAGAAAGATTCGATCTAAGATCTTGCATGGAATCAC
ATTTCCGCTGCTTACCACTGCTGATGGTAAGAAATTTGGAAAGAGTGAAA
ATGGGGCTGTGTGGCTTTCGAAGGAGAAACTATCTCCATATCAGTTCTAC
CAATTTTTGATCCGCACTACGGATGAGGATGTCATCACCCTTTTGAAGCG
GTTAACGTTCTTGGCACTGGAGGAGATTGAAAACATTGAACAGCAGATGA
AGTTTCCCCATTATGTTCCGAACACTGCACAAAAACGACTGGCTGAAGAG
GTTACTCGAATAGTTCACGGGGACGAAGGAGTCAAGTCTGCTTTAGCAGC
CACAGCAGCCGCTGCCCCAGGGAGTAGTGCTGTTCTAAGTGTAGAAGCGC
TAGAAGCAATTGCATCCGACATGCCGAGCGCTAGCTTTGGAGCGGAAGAA
ATTGTCGGGATTGGCGTCGTCGACCTGATGGTGAAAGGAGGTTTGCAGAA
GTCTAAAGGTGAGGCTAGGCGTCTCATCAGAAACGGTGGTGGCTACCTGA
ACAACGAGAAGATTACCGATGAACGTGCCGTGCTTGAAAGCAATGACCTT
GTAGGTGGCAAGCTCGCCCTCTTAGCTGCTGGCAAGAAAAACAAGCTTTT
GGTTCGTGTAAAGTGA
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Coding sequence (CDS) from alignment at tig00000120_pilon:35627..37042-

>Gchil8855.t1 ID=Gchil8855.t1|Name=Gchil8855.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1416bp|location=Sequence derived from alignment at tig00000120_pilon:35627..37042- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCGCCCTGTTGCCTTTGCTCGATGCGCGCAGCTGTTCACGGCTCG
CTCATCTGCCCCGCGTGCAAGATTCGCCGCGTGTGCGCGACTGCCGCCGA
AGCGGCCCGTTGTTATGCCGAATGTGATTGATGTACTGCAGAAAAGAGGA
CTGTTGGACGCCTGCACCGCGGAGTCTTATGTTGTGAAAACGCTGTGTGA
GAAGCCTATCACCGTGTATACTGGGTTCGACCCCACAGCCGATTCTCTGC
ATTTGGGGAATCTGTTGGCCATTTTGACACTGGCTTGGTTTCAGAGATGC
GGCCATCGAGTTGTTGCTCTCCTTGGAGGCGCCACGGCCAGAGTTGGCGA
CCCAAGTGGAAAGAGTGTTGAACGGCCTGTTTTGGACGATGAGACCATAC
GACGCAACCTGAACGGTATCGAAGCCAATTTGAACCAGATTTTACAACGG
TCGGAGAGACACCTTCAGCAGGCTGGTATGGCCAACCAGCCGTTTGTCAT
TGCGAATAACTACGACTGGTTGGGACAGATTTCATTTTTGCACTTTCTAC
GTGACGTTGGAAAATATGCGCGCGTCAACACCATGATTGCGAAAGATTCG
GTCAAGACCAGACTTGCAAGTGATGACGGTATAAGTTTCACTGAGTTTAC
GTATCAGCTGTTGCAGGCATTTGACTTCGTGCATTTGAGCGATAGTCTTA
ACTGTGTTATGCAACTTGGAGGTTCAGATCAGTGGGGGAATATTACTGCT
GGAACCGAACTCGCTAGAAAGATTCGATCTAAGATCTTGCATGGAATCAC
ATTTCCGCTGCTTACCACTGCTGATGGTAAGAAATTTGGAAAGAGTGAAA
ATGGGGCTGTGTGGCTTTCGAAGGAGAAACTATCTCCATATCAGTTCTAC
CAATTTTTGATCCGCACTACGGATGAGGATGTCATCACCCTTTTGAAGCG
GTTAACGTTCTTGGCACTGGAGGAGATTGAAAACATTGAACAGCAGATGA
AGTTTCCCCATTATGTTCCGAACACTGCACAAAAACGACTGGCTGAAGAG
GTTACTCGAATAGTTCACGGGGACGAAGGAGTCAAGTCTGCTTTAGCAGC
CACAGCAGCCGCTGCCCCAGGGAGTAGTGCTGTTCTAAGTGTAGAAGCGC
TAGAAGCAATTGCATCCGACATGCCGAGCGCTAGCTTTGGAGCGGAAGAA
ATTGTCGGGATTGGCGTCGTCGACCTGATGGTGAAAGGAGGTTTGCAGAA
GTCTAAAGGTGAGGCTAGGCGTCTCATCAGAAACGGTGGTGGCTACCTGA
ACAACGAGAAGATTACCGATGAACGTGCCGTGCTTGAAAGCAATGACCTT
GTAGGTGGCAAGCTCGCCCTCTTAGCTGCTGGCAAGAAAAACAAGCTTTT
GGTTCGTGTAAAGTGA
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