Gchil883.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil883.t1
Unique NameGchil883.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length481
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:790262..791704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil883Gchil883Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 790262..791704 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil883.t1.start1Gchil883.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 790262..790264 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil883.t1.CDS1Gchil883.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 790262..791704 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil883.t1.exon1Gchil883.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 790262..791704 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil883.t1.stop1Gchil883.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 791702..791704 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil883.t1Gchil883.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 790262..791704 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil883.t1 ID=Gchil883.t1|Name=Gchil883.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=481bp
MAEGEFLGFGAFETTAFCTSILVACYSLISNPSGRQSAFDSAEYQIFAGW
RLALLCIAAQLVLMATVLAQQLVRTTAERTEATAWLLLLMVAPWAPLAGS
VRNTLTSGARVRRMMRRRLARNELAAVLRDRFKFGQRAIAVPSVIFHATG
LLPVFPNRALAQRPELAPHAAALRREAMMAAQLEEPNSLALGALWAMNQG
LQPTSVSRFRLRAWKLISSVDPLARRWTVRTCVLNVDVMPDVPSIVERAR
YLDVIDLLQQGGTLSDELVHRGLGRFCHGCTLATRCAVEIFLESSQRSHT
DLRAGEWLKNVGMDWAGSFERVIDVMWEACFMDSKALRVQGHHKDASPNY
NDRSKVTTTKMLALLFIISRAVIGLTEDHPVFAAVCAVVADGSFALSWWT
RYWERVGDKIRAKNGGHIVVDSASRSVFKACLRELVDEDMFQIVHILLHT
PVQDRMCSDSSCFLHSARLVSTAYSPKSIA*
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spliced messenger RNA

>Gchil883.t1 ID=Gchil883.t1|Name=Gchil883.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1443bp|location=Sequence derived from alignment at tig00000017_pilon:790262..791704+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGAAGGTGAGTTCCTCGGGTTCGGGGCCTTCGAGACGACGGCGTT
CTGCACGTCGATCCTGGTGGCATGCTACTCGCTGATATCGAACCCGTCGG
GGCGGCAGAGCGCGTTCGACAGCGCCGAGTACCAGATCTTCGCGGGATGG
CGCTTGGCGCTGCTGTGCATTGCGGCGCAGCTGGTGCTGATGGCGACGGT
GTTAGCGCAGCAGCTGGTGCGCACGACGGCGGAGCGCACCGAGGCCACGG
CGTGGCTGCTGCTGCTCATGGTGGCGCCGTGGGCGCCGCTGGCCGGCAGC
GTGCGAAATACCCTCACCTCGGGCGCGCGCGTTCGGCGCATGATGCGTCG
CCGCCTGGCGCGCAACGAGCTCGCCGCCGTGCTGCGCGACCGCTTCAAGT
TCGGACAGCGCGCCATTGCCGTACCCTCCGTCATCTTCCACGCCACCGGC
CTTCTGCCCGTCTTCCCCAATCGCGCGCTCGCGCAGCGTCCCGAGCTTGC
GCCCCATGCCGCCGCCCTGCGTCGCGAGGCTATGATGGCTGCGCAGCTCG
AAGAGCCCAACTCGCTCGCGCTCGGCGCGCTGTGGGCTATGAACCAGGGT
CTGCAGCCCACCTCCGTGTCCCGTTTCAGATTGCGTGCTTGGAAGCTTAT
CTCCAGCGTCGACCCGCTCGCCCGTCGCTGGACCGTGCGCACCTGTGTCC
TCAACGTCGACGTCATGCCTGACGTGCCCTCAATCGTGGAGCGCGCCCGC
TACCTCGACGTCATCGACCTCCTGCAGCAAGGAGGCACGCTCAGCGATGA
GCTCGTGCACAGGGGCTTGGGTCGCTTTTGCCATGGCTGCACCCTGGCCA
CCCGTTGCGCCGTCGAGATCTTCCTGGAGAGCTCCCAACGCAGCCACACC
GACCTTCGCGCCGGCGAGTGGCTCAAAAACGTAGGCATGGACTGGGCCGG
CAGTTTTGAGCGCGTCATTGACGTCATGTGGGAGGCCTGCTTCATGGACT
CCAAGGCCCTGCGCGTGCAGGGCCATCACAAAGACGCCAGCCCCAATTAC
AACGATCGCTCCAAGGTCACCACCACCAAGATGCTGGCGCTGCTGTTTAT
CATTTCCCGCGCCGTCATAGGCCTCACGGAAGACCACCCCGTCTTCGCCG
CAGTCTGCGCCGTTGTTGCCGACGGGTCCTTCGCCCTTTCCTGGTGGACA
CGCTACTGGGAGCGCGTCGGCGACAAGATTCGCGCTAAGAACGGCGGGCA
CATCGTTGTTGATTCCGCATCCAGGAGCGTGTTCAAAGCGTGCCTGCGCG
AATTGGTCGATGAAGACATGTTCCAAATCGTCCACATTTTGCTGCATACT
CCCGTCCAAGATCGCATGTGTTCCGACTCGAGCTGCTTTCTTCACAGCGC
CCGCCTCGTGTCAACTGCCTACAGCCCCAAAAGCATTGCGTGA
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protein sequence of Gchil883.t1

>Gchil883.t1 ID=Gchil883.t1|Name=Gchil883.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=481bp
MAEGEFLGFGAFETTAFCTSILVACYSLISNPSGRQSAFDSAEYQIFAGW
RLALLCIAAQLVLMATVLAQQLVRTTAERTEATAWLLLLMVAPWAPLAGS
VRNTLTSGARVRRMMRRRLARNELAAVLRDRFKFGQRAIAVPSVIFHATG
LLPVFPNRALAQRPELAPHAAALRREAMMAAQLEEPNSLALGALWAMNQG
LQPTSVSRFRLRAWKLISSVDPLARRWTVRTCVLNVDVMPDVPSIVERAR
YLDVIDLLQQGGTLSDELVHRGLGRFCHGCTLATRCAVEIFLESSQRSHT
DLRAGEWLKNVGMDWAGSFERVIDVMWEACFMDSKALRVQGHHKDASPNY
NDRSKVTTTKMLALLFIISRAVIGLTEDHPVFAAVCAVVADGSFALSWWT
RYWERVGDKIRAKNGGHIVVDSASRSVFKACLRELVDEDMFQIVHILLHT
PVQDRMCSDSSCFLHSARLVSTAYSPKSIA*
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mRNA from alignment at tig00000017_pilon:790262..791704+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil883.t1 ID=Gchil883.t1|Name=Gchil883.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1443bp|location=Sequence derived from alignment at tig00000017_pilon:790262..791704+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGAAGGTGAGTTCCTCGGGTTCGGGGCCTTCGAGACGACGGCGTT
CTGCACGTCGATCCTGGTGGCATGCTACTCGCTGATATCGAACCCGTCGG
GGCGGCAGAGCGCGTTCGACAGCGCCGAGTACCAGATCTTCGCGGGATGG
CGCTTGGCGCTGCTGTGCATTGCGGCGCAGCTGGTGCTGATGGCGACGGT
GTTAGCGCAGCAGCTGGTGCGCACGACGGCGGAGCGCACCGAGGCCACGG
CGTGGCTGCTGCTGCTCATGGTGGCGCCGTGGGCGCCGCTGGCCGGCAGC
GTGCGAAATACCCTCACCTCGGGCGCGCGCGTTCGGCGCATGATGCGTCG
CCGCCTGGCGCGCAACGAGCTCGCCGCCGTGCTGCGCGACCGCTTCAAGT
TCGGACAGCGCGCCATTGCCGTACCCTCCGTCATCTTCCACGCCACCGGC
CTTCTGCCCGTCTTCCCCAATCGCGCGCTCGCGCAGCGTCCCGAGCTTGC
GCCCCATGCCGCCGCCCTGCGTCGCGAGGCTATGATGGCTGCGCAGCTCG
AAGAGCCCAACTCGCTCGCGCTCGGCGCGCTGTGGGCTATGAACCAGGGT
CTGCAGCCCACCTCCGTGTCCCGTTTCAGATTGCGTGCTTGGAAGCTTAT
CTCCAGCGTCGACCCGCTCGCCCGTCGCTGGACCGTGCGCACCTGTGTCC
TCAACGTCGACGTCATGCCTGACGTGCCCTCAATCGTGGAGCGCGCCCGC
TACCTCGACGTCATCGACCTCCTGCAGCAAGGAGGCACGCTCAGCGATGA
GCTCGTGCACAGGGGCTTGGGTCGCTTTTGCCATGGCTGCACCCTGGCCA
CCCGTTGCGCCGTCGAGATCTTCCTGGAGAGCTCCCAACGCAGCCACACC
GACCTTCGCGCCGGCGAGTGGCTCAAAAACGTAGGCATGGACTGGGCCGG
CAGTTTTGAGCGCGTCATTGACGTCATGTGGGAGGCCTGCTTCATGGACT
CCAAGGCCCTGCGCGTGCAGGGCCATCACAAAGACGCCAGCCCCAATTAC
AACGATCGCTCCAAGGTCACCACCACCAAGATGCTGGCGCTGCTGTTTAT
CATTTCCCGCGCCGTCATAGGCCTCACGGAAGACCACCCCGTCTTCGCCG
CAGTCTGCGCCGTTGTTGCCGACGGGTCCTTCGCCCTTTCCTGGTGGACA
CGCTACTGGGAGCGCGTCGGCGACAAGATTCGCGCTAAGAACGGCGGGCA
CATCGTTGTTGATTCCGCATCCAGGAGCGTGTTCAAAGCGTGCCTGCGCG
AATTGGTCGATGAAGACATGTTCCAAATCGTCCACATTTTGCTGCATACT
CCCGTCCAAGATCGCATGTGTTCCGACTCGAGCTGCTTTCTTCACAGCGC
CCGCCTCGTGTCAACTGCCTACAGCCCCAAAAGCATTGCGTGA
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Coding sequence (CDS) from alignment at tig00000017_pilon:790262..791704+

>Gchil883.t1 ID=Gchil883.t1|Name=Gchil883.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1443bp|location=Sequence derived from alignment at tig00000017_pilon:790262..791704+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGAAGGTGAGTTCCTCGGGTTCGGGGCCTTCGAGACGACGGCGTT
CTGCACGTCGATCCTGGTGGCATGCTACTCGCTGATATCGAACCCGTCGG
GGCGGCAGAGCGCGTTCGACAGCGCCGAGTACCAGATCTTCGCGGGATGG
CGCTTGGCGCTGCTGTGCATTGCGGCGCAGCTGGTGCTGATGGCGACGGT
GTTAGCGCAGCAGCTGGTGCGCACGACGGCGGAGCGCACCGAGGCCACGG
CGTGGCTGCTGCTGCTCATGGTGGCGCCGTGGGCGCCGCTGGCCGGCAGC
GTGCGAAATACCCTCACCTCGGGCGCGCGCGTTCGGCGCATGATGCGTCG
CCGCCTGGCGCGCAACGAGCTCGCCGCCGTGCTGCGCGACCGCTTCAAGT
TCGGACAGCGCGCCATTGCCGTACCCTCCGTCATCTTCCACGCCACCGGC
CTTCTGCCCGTCTTCCCCAATCGCGCGCTCGCGCAGCGTCCCGAGCTTGC
GCCCCATGCCGCCGCCCTGCGTCGCGAGGCTATGATGGCTGCGCAGCTCG
AAGAGCCCAACTCGCTCGCGCTCGGCGCGCTGTGGGCTATGAACCAGGGT
CTGCAGCCCACCTCCGTGTCCCGTTTCAGATTGCGTGCTTGGAAGCTTAT
CTCCAGCGTCGACCCGCTCGCCCGTCGCTGGACCGTGCGCACCTGTGTCC
TCAACGTCGACGTCATGCCTGACGTGCCCTCAATCGTGGAGCGCGCCCGC
TACCTCGACGTCATCGACCTCCTGCAGCAAGGAGGCACGCTCAGCGATGA
GCTCGTGCACAGGGGCTTGGGTCGCTTTTGCCATGGCTGCACCCTGGCCA
CCCGTTGCGCCGTCGAGATCTTCCTGGAGAGCTCCCAACGCAGCCACACC
GACCTTCGCGCCGGCGAGTGGCTCAAAAACGTAGGCATGGACTGGGCCGG
CAGTTTTGAGCGCGTCATTGACGTCATGTGGGAGGCCTGCTTCATGGACT
CCAAGGCCCTGCGCGTGCAGGGCCATCACAAAGACGCCAGCCCCAATTAC
AACGATCGCTCCAAGGTCACCACCACCAAGATGCTGGCGCTGCTGTTTAT
CATTTCCCGCGCCGTCATAGGCCTCACGGAAGACCACCCCGTCTTCGCCG
CAGTCTGCGCCGTTGTTGCCGACGGGTCCTTCGCCCTTTCCTGGTGGACA
CGCTACTGGGAGCGCGTCGGCGACAAGATTCGCGCTAAGAACGGCGGGCA
CATCGTTGTTGATTCCGCATCCAGGAGCGTGTTCAAAGCGTGCCTGCGCG
AATTGGTCGATGAAGACATGTTCCAAATCGTCCACATTTTGCTGCATACT
CCCGTCCAAGATCGCATGTGTTCCGACTCGAGCTGCTTTCTTCACAGCGC
CCGCCTCGTGTCAACTGCCTACAGCCCCAAAAGCATTGCGTGA
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