Gchil881.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil881.t1
Unique NameGchil881.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length202
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:787574..788179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707899.1
Preferred nameFCF1
PFAMsFcf1
Max annot lvl2759|Eukaryota
KEGG rclassRC00006,RC00868,RC00887
KEGG koko:K14566,ko:K19562
KEGG ReactionR03182,R03231
KEGG Pathwayko00780,ko01100,ko03008,map00780,map01100,map03008
KEGG ModuleM00123
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:1901360,GO:1990904
Evalue3.34e-80
EggNOG OGsCOG1412@1|root,KOG3165@2759|Eukaryota
EC2.6.1.62,6.3.3.3
DescriptionRRNA-processing protein FCF1
COG categoryD
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil881Gchil881Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 787574..788179 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil881.t1.start1Gchil881.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 787574..787576 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil881.t1.CDS1Gchil881.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 787574..788179 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil881.t1.exon1Gchil881.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 787574..788179 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil881.t1.stop1Gchil881.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 788177..788179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil881.t1Gchil881.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 787574..788179 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil881.t1 ID=Gchil881.t1|Name=Gchil881.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=202bp
MGNARKKRQRKYAAVKRLISPNDARLKMKELSKEEAAPVLAKKSDKDLLV
NNSTPSSMFFRFNPSLGPPFRILLDTNFINFSVANKIDVTRGMLNCLAAP
STICISDCVIAELQKLPKKYSVALRVARDRRFKRLICSHKGTYADDCIMQ
RIAAHRIYIVATCDKDLKRRIRKVPGIPIMFISGHQYKVERLPETLAPTL
K*
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spliced messenger RNA

>Gchil881.t1 ID=Gchil881.t1|Name=Gchil881.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=606bp|location=Sequence derived from alignment at tig00000017_pilon:787574..788179+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAATGCGAGGAAGAAACGGCAGCGAAAGTACGCTGCGGTGAAGCG
TCTCATTTCACCGAATGACGCTCGGCTCAAGATGAAGGAGCTTTCGAAAG
AAGAAGCTGCACCTGTTCTCGCAAAGAAGTCGGATAAGGATCTCTTAGTG
AATAACTCCACGCCTTCATCCATGTTCTTTCGTTTTAATCCCTCGCTTGG
ACCACCTTTTAGAATTCTCTTGGATACTAATTTCATCAACTTTTCCGTCG
CTAACAAAATTGATGTTACTCGCGGAATGCTCAACTGCCTTGCTGCGCCC
TCTACCATCTGCATCTCGGATTGTGTTATTGCTGAGCTACAGAAGCTTCC
GAAAAAATACTCAGTTGCTCTACGGGTAGCTCGGGATCGACGGTTTAAGC
GACTGATTTGCTCTCACAAAGGAACATATGCAGACGATTGTATCATGCAG
CGTATTGCCGCGCATCGAATTTACATTGTGGCTACCTGCGATAAAGATTT
GAAGAGGCGTATCAGGAAAGTCCCTGGAATACCAATAATGTTTATATCAG
GCCACCAGTACAAGGTAGAGCGCCTCCCTGAAACGTTGGCTCCCACTCTC
AAATAG
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protein sequence of Gchil881.t1

>Gchil881.t1 ID=Gchil881.t1|Name=Gchil881.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=202bp
MGNARKKRQRKYAAVKRLISPNDARLKMKELSKEEAAPVLAKKSDKDLLV
NNSTPSSMFFRFNPSLGPPFRILLDTNFINFSVANKIDVTRGMLNCLAAP
STICISDCVIAELQKLPKKYSVALRVARDRRFKRLICSHKGTYADDCIMQ
RIAAHRIYIVATCDKDLKRRIRKVPGIPIMFISGHQYKVERLPETLAPTL
K*
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mRNA from alignment at tig00000017_pilon:787574..788179+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil881.t1 ID=Gchil881.t1|Name=Gchil881.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=606bp|location=Sequence derived from alignment at tig00000017_pilon:787574..788179+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGAAATGCGAGGAAGAAACGGCAGCGAAAGTACGCTGCGGTGAAGCG
TCTCATTTCACCGAATGACGCTCGGCTCAAGATGAAGGAGCTTTCGAAAG
AAGAAGCTGCACCTGTTCTCGCAAAGAAGTCGGATAAGGATCTCTTAGTG
AATAACTCCACGCCTTCATCCATGTTCTTTCGTTTTAATCCCTCGCTTGG
ACCACCTTTTAGAATTCTCTTGGATACTAATTTCATCAACTTTTCCGTCG
CTAACAAAATTGATGTTACTCGCGGAATGCTCAACTGCCTTGCTGCGCCC
TCTACCATCTGCATCTCGGATTGTGTTATTGCTGAGCTACAGAAGCTTCC
GAAAAAATACTCAGTTGCTCTACGGGTAGCTCGGGATCGACGGTTTAAGC
GACTGATTTGCTCTCACAAAGGAACATATGCAGACGATTGTATCATGCAG
CGTATTGCCGCGCATCGAATTTACATTGTGGCTACCTGCGATAAAGATTT
GAAGAGGCGTATCAGGAAAGTCCCTGGAATACCAATAATGTTTATATCAG
GCCACCAGTACAAGGTAGAGCGCCTCCCTGAAACGTTGGCTCCCACTCTC
AAATAG
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Coding sequence (CDS) from alignment at tig00000017_pilon:787574..788179+

>Gchil881.t1 ID=Gchil881.t1|Name=Gchil881.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=606bp|location=Sequence derived from alignment at tig00000017_pilon:787574..788179+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGAAATGCGAGGAAGAAACGGCAGCGAAAGTACGCTGCGGTGAAGCG
TCTCATTTCACCGAATGACGCTCGGCTCAAGATGAAGGAGCTTTCGAAAG
AAGAAGCTGCACCTGTTCTCGCAAAGAAGTCGGATAAGGATCTCTTAGTG
AATAACTCCACGCCTTCATCCATGTTCTTTCGTTTTAATCCCTCGCTTGG
ACCACCTTTTAGAATTCTCTTGGATACTAATTTCATCAACTTTTCCGTCG
CTAACAAAATTGATGTTACTCGCGGAATGCTCAACTGCCTTGCTGCGCCC
TCTACCATCTGCATCTCGGATTGTGTTATTGCTGAGCTACAGAAGCTTCC
GAAAAAATACTCAGTTGCTCTACGGGTAGCTCGGGATCGACGGTTTAAGC
GACTGATTTGCTCTCACAAAGGAACATATGCAGACGATTGTATCATGCAG
CGTATTGCCGCGCATCGAATTTACATTGTGGCTACCTGCGATAAAGATTT
GAAGAGGCGTATCAGGAAAGTCCCTGGAATACCAATAATGTTTATATCAG
GCCACCAGTACAAGGTAGAGCGCCTCCCTGAAACGTTGGCTCCCACTCTC
AAATAG
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