Gchil880.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil880.t1
Unique NameGchil880.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length448
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:784209..785552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil880Gchil880Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 784209..785552 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil880.t1.stop1Gchil880.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 784209..784211 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil880.t1.CDS1Gchil880.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 784209..785552 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil880.t1.exon1Gchil880.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 784209..785552 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil880.t1.start1Gchil880.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 785550..785552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil880.t1Gchil880.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 784209..785552 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil880.t1 ID=Gchil880.t1|Name=Gchil880.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=448bp
MYSNDIERVVEKALSALWRAIFSLSWTGDALEKDKKAAIIARQPPSHKHR
DQSAFRSVRTILLLMSIVVSVIDVVALFALSTEGKDVADKPEFAIRMEEA
EEIPVGREMIWYNPHEAQVRYEYVIRRLGTRIMFRNGTEFSVEVPRKLDA
LKDEKWAFNVALAEDDTYATVHTKDFLSEEKANFSEVSSQVTGFTESGKR
LVHYPMAPRDIEKNACSGSMGATGVHESKDSGTFCFTDELRDMSCENKSE
GETVSFSMKCSEIRVERLGGNVVPWDNSSVWWLKDYGMQMNGLGKASVMQ
MVSLRGYKRDEVSPSAMIVAALLTEYSSQSRLVRREFMVDVSVVIIPNWL
VASSLAAFLLMVSLGTLASMYAAVKNLVLLNNWKELFISNVLEPLDCLNR
RKKKEFRCVVGEGRDTRRRCHLYVEPGQEVTPLSWVQRKDIGGLKTA*
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spliced messenger RNA

>Gchil880.t1 ID=Gchil880.t1|Name=Gchil880.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at tig00000017_pilon:784209..785552- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATTCCAATGACATTGAAAGGGTTGTTGAAAAAGCTCTCTCAGCTTT
GTGGAGGGCCATATTTTCATTGAGTTGGACGGGAGACGCACTGGAGAAGG
ACAAGAAGGCCGCCATAATCGCACGCCAGCCGCCATCGCACAAGCATCGA
GATCAAAGCGCCTTCCGTTCCGTTAGAACAATTCTTCTTTTGATGAGCAT
CGTGGTTTCTGTGATTGATGTGGTCGCTCTTTTCGCTCTCTCCACGGAAG
GGAAGGATGTAGCCGACAAACCAGAGTTTGCAATTCGTATGGAGGAAGCA
GAGGAAATCCCAGTAGGACGTGAAATGATATGGTACAACCCCCATGAGGC
GCAAGTTCGATACGAGTACGTTATTCGACGGTTGGGTACAAGGATTATGT
TCAGGAACGGAACTGAATTTAGCGTAGAAGTGCCAAGGAAATTGGATGCT
CTCAAAGACGAGAAATGGGCTTTTAATGTAGCTCTTGCTGAAGATGATAC
ATATGCCACCGTGCACACGAAAGACTTCTTGAGTGAAGAGAAGGCTAACT
TCAGTGAGGTTTCAAGTCAGGTGACAGGATTCACGGAAAGTGGGAAACGT
CTGGTTCATTATCCAATGGCTCCAAGAGACATAGAAAAGAATGCTTGCTC
GGGTAGCATGGGTGCAACTGGTGTGCATGAATCAAAAGATTCTGGCACGT
TCTGTTTCACCGATGAGTTGCGAGATATGTCTTGTGAGAACAAAAGCGAG
GGTGAAACAGTGTCGTTCTCAATGAAGTGTTCGGAAATTAGAGTTGAAAG
ATTGGGTGGCAACGTAGTTCCATGGGACAACAGCAGTGTGTGGTGGTTAA
AGGACTACGGAATGCAAATGAATGGACTCGGAAAGGCCAGTGTGATGCAG
ATGGTGTCGCTCAGAGGCTACAAACGAGATGAGGTGTCACCTAGCGCGAT
GATAGTAGCTGCGCTATTGACGGAGTACTCCTCGCAAAGCAGGCTGGTTC
GAAGGGAGTTCATGGTAGATGTGAGCGTTGTGATCATACCCAATTGGTTG
GTTGCCAGTTCTCTGGCAGCGTTCCTATTGATGGTTTCACTCGGCACGCT
GGCATCGATGTACGCCGCAGTAAAGAATCTTGTGCTGCTAAACAATTGGA
AAGAGCTGTTCATCTCCAACGTTCTGGAACCTCTGGACTGCCTAAACAGG
AGAAAAAAGAAAGAGTTTCGTTGTGTTGTGGGGGAAGGCCGTGATACGCG
AAGGAGGTGTCACTTGTACGTGGAGCCAGGACAGGAAGTAACGCCTCTGA
GCTGGGTGCAGCGAAAGGACATTGGGGGGTTGAAGACCGCCTGA
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protein sequence of Gchil880.t1

>Gchil880.t1 ID=Gchil880.t1|Name=Gchil880.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=448bp
MYSNDIERVVEKALSALWRAIFSLSWTGDALEKDKKAAIIARQPPSHKHR
DQSAFRSVRTILLLMSIVVSVIDVVALFALSTEGKDVADKPEFAIRMEEA
EEIPVGREMIWYNPHEAQVRYEYVIRRLGTRIMFRNGTEFSVEVPRKLDA
LKDEKWAFNVALAEDDTYATVHTKDFLSEEKANFSEVSSQVTGFTESGKR
LVHYPMAPRDIEKNACSGSMGATGVHESKDSGTFCFTDELRDMSCENKSE
GETVSFSMKCSEIRVERLGGNVVPWDNSSVWWLKDYGMQMNGLGKASVMQ
MVSLRGYKRDEVSPSAMIVAALLTEYSSQSRLVRREFMVDVSVVIIPNWL
VASSLAAFLLMVSLGTLASMYAAVKNLVLLNNWKELFISNVLEPLDCLNR
RKKKEFRCVVGEGRDTRRRCHLYVEPGQEVTPLSWVQRKDIGGLKTA*
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mRNA from alignment at tig00000017_pilon:784209..785552-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil880.t1 ID=Gchil880.t1|Name=Gchil880.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at tig00000017_pilon:784209..785552- (Gracilaria chilensis NLEC103_M9 male)
ATGTATTCCAATGACATTGAAAGGGTTGTTGAAAAAGCTCTCTCAGCTTT
GTGGAGGGCCATATTTTCATTGAGTTGGACGGGAGACGCACTGGAGAAGG
ACAAGAAGGCCGCCATAATCGCACGCCAGCCGCCATCGCACAAGCATCGA
GATCAAAGCGCCTTCCGTTCCGTTAGAACAATTCTTCTTTTGATGAGCAT
CGTGGTTTCTGTGATTGATGTGGTCGCTCTTTTCGCTCTCTCCACGGAAG
GGAAGGATGTAGCCGACAAACCAGAGTTTGCAATTCGTATGGAGGAAGCA
GAGGAAATCCCAGTAGGACGTGAAATGATATGGTACAACCCCCATGAGGC
GCAAGTTCGATACGAGTACGTTATTCGACGGTTGGGTACAAGGATTATGT
TCAGGAACGGAACTGAATTTAGCGTAGAAGTGCCAAGGAAATTGGATGCT
CTCAAAGACGAGAAATGGGCTTTTAATGTAGCTCTTGCTGAAGATGATAC
ATATGCCACCGTGCACACGAAAGACTTCTTGAGTGAAGAGAAGGCTAACT
TCAGTGAGGTTTCAAGTCAGGTGACAGGATTCACGGAAAGTGGGAAACGT
CTGGTTCATTATCCAATGGCTCCAAGAGACATAGAAAAGAATGCTTGCTC
GGGTAGCATGGGTGCAACTGGTGTGCATGAATCAAAAGATTCTGGCACGT
TCTGTTTCACCGATGAGTTGCGAGATATGTCTTGTGAGAACAAAAGCGAG
GGTGAAACAGTGTCGTTCTCAATGAAGTGTTCGGAAATTAGAGTTGAAAG
ATTGGGTGGCAACGTAGTTCCATGGGACAACAGCAGTGTGTGGTGGTTAA
AGGACTACGGAATGCAAATGAATGGACTCGGAAAGGCCAGTGTGATGCAG
ATGGTGTCGCTCAGAGGCTACAAACGAGATGAGGTGTCACCTAGCGCGAT
GATAGTAGCTGCGCTATTGACGGAGTACTCCTCGCAAAGCAGGCTGGTTC
GAAGGGAGTTCATGGTAGATGTGAGCGTTGTGATCATACCCAATTGGTTG
GTTGCCAGTTCTCTGGCAGCGTTCCTATTGATGGTTTCACTCGGCACGCT
GGCATCGATGTACGCCGCAGTAAAGAATCTTGTGCTGCTAAACAATTGGA
AAGAGCTGTTCATCTCCAACGTTCTGGAACCTCTGGACTGCCTAAACAGG
AGAAAAAAGAAAGAGTTTCGTTGTGTTGTGGGGGAAGGCCGTGATACGCG
AAGGAGGTGTCACTTGTACGTGGAGCCAGGACAGGAAGTAACGCCTCTGA
GCTGGGTGCAGCGAAAGGACATTGGGGGGTTGAAGACCGCCTGA
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Coding sequence (CDS) from alignment at tig00000017_pilon:784209..785552-

>Gchil880.t1 ID=Gchil880.t1|Name=Gchil880.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1344bp|location=Sequence derived from alignment at tig00000017_pilon:784209..785552- (Gracilaria chilensis NLEC103_M9 male)
ATGTATTCCAATGACATTGAAAGGGTTGTTGAAAAAGCTCTCTCAGCTTT
GTGGAGGGCCATATTTTCATTGAGTTGGACGGGAGACGCACTGGAGAAGG
ACAAGAAGGCCGCCATAATCGCACGCCAGCCGCCATCGCACAAGCATCGA
GATCAAAGCGCCTTCCGTTCCGTTAGAACAATTCTTCTTTTGATGAGCAT
CGTGGTTTCTGTGATTGATGTGGTCGCTCTTTTCGCTCTCTCCACGGAAG
GGAAGGATGTAGCCGACAAACCAGAGTTTGCAATTCGTATGGAGGAAGCA
GAGGAAATCCCAGTAGGACGTGAAATGATATGGTACAACCCCCATGAGGC
GCAAGTTCGATACGAGTACGTTATTCGACGGTTGGGTACAAGGATTATGT
TCAGGAACGGAACTGAATTTAGCGTAGAAGTGCCAAGGAAATTGGATGCT
CTCAAAGACGAGAAATGGGCTTTTAATGTAGCTCTTGCTGAAGATGATAC
ATATGCCACCGTGCACACGAAAGACTTCTTGAGTGAAGAGAAGGCTAACT
TCAGTGAGGTTTCAAGTCAGGTGACAGGATTCACGGAAAGTGGGAAACGT
CTGGTTCATTATCCAATGGCTCCAAGAGACATAGAAAAGAATGCTTGCTC
GGGTAGCATGGGTGCAACTGGTGTGCATGAATCAAAAGATTCTGGCACGT
TCTGTTTCACCGATGAGTTGCGAGATATGTCTTGTGAGAACAAAAGCGAG
GGTGAAACAGTGTCGTTCTCAATGAAGTGTTCGGAAATTAGAGTTGAAAG
ATTGGGTGGCAACGTAGTTCCATGGGACAACAGCAGTGTGTGGTGGTTAA
AGGACTACGGAATGCAAATGAATGGACTCGGAAAGGCCAGTGTGATGCAG
ATGGTGTCGCTCAGAGGCTACAAACGAGATGAGGTGTCACCTAGCGCGAT
GATAGTAGCTGCGCTATTGACGGAGTACTCCTCGCAAAGCAGGCTGGTTC
GAAGGGAGTTCATGGTAGATGTGAGCGTTGTGATCATACCCAATTGGTTG
GTTGCCAGTTCTCTGGCAGCGTTCCTATTGATGGTTTCACTCGGCACGCT
GGCATCGATGTACGCCGCAGTAAAGAATCTTGTGCTGCTAAACAATTGGA
AAGAGCTGTTCATCTCCAACGTTCTGGAACCTCTGGACTGCCTAAACAGG
AGAAAAAAGAAAGAGTTTCGTTGTGTTGTGGGGGAAGGCCGTGATACGCG
AAGGAGGTGTCACTTGTACGTGGAGCCAGGACAGGAAGTAACGCCTCTGA
GCTGGGTGCAGCGAAAGGACATTGGGGGGTTGAAGACCGCCTGA
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