Gchil878.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil878.t1
Unique NameGchil878.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length256
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:760998..761765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil878Gchil878Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 760998..761765 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil878.t1.stop1Gchil878.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 760998..761000 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil878.t1.CDS1Gchil878.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 760998..761765 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil878.t1.exon1Gchil878.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 760998..761765 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil878.t1.start1Gchil878.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 761763..761765 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil878.t1Gchil878.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 760998..761765 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil878.t1 ID=Gchil878.t1|Name=Gchil878.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=256bp
MQSALVPPVVTPEGTATTSVCSTASVTSLIPLKRRIPQAPVFITRHVPQS
SFISDASTPLPRTYYFDDDYPSIAASESTAAPEPPLSQQHPSLLSQPRRP
SVTGAIRRRISLARRQDDRTLPYAIAHKLKRTSFEQDSVLDDWNRSRNRS
STTSSRLHHSQPFTCGAFAFRSLFARHQRPSPPKSPVQQRRTLQRPLHRS
HQHQNTLQSTAIVPDSARQTQEDIQFVSTLAYEDFMHGRNRPSKSLRVFA
RLRRS*
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spliced messenger RNA

>Gchil878.t1 ID=Gchil878.t1|Name=Gchil878.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=768bp|location=Sequence derived from alignment at tig00000017_pilon:760998..761765- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTCCGCTCTCGTTCCCCCCGTCGTCACCCCCGAAGGCACTGCTAC
CACTTCCGTGTGCTCCACCGCCTCCGTCACTAGTTTGATTCCCTTGAAGC
GCCGCATCCCGCAAGCACCCGTTTTCATCACACGACACGTTCCCCAATCC
TCCTTCATATCCGATGCCTCCACCCCCCTGCCAAGGACCTACTACTTTGA
CGACGACTACCCCTCAATCGCCGCTTCCGAGAGCACCGCCGCCCCCGAAC
CTCCGCTCTCACAACAGCACCCATCGCTCCTGTCGCAGCCAAGACGCCCC
TCCGTTACGGGCGCCATTCGTCGCCGCATCTCTCTCGCCCGCCGTCAAGA
CGATCGCACCCTTCCCTACGCCATTGCCCACAAGCTTAAGCGCACCTCAT
TCGAGCAAGATAGCGTGTTAGACGATTGGAATCGATCCAGGAACCGTTCT
TCCACAACCTCCTCCCGTTTGCATCATTCACAACCGTTCACTTGTGGCGC
CTTTGCTTTTCGCTCCTTGTTCGCCCGACATCAACGACCATCACCACCCA
AATCGCCCGTTCAACAGCGCCGTACTCTACAACGCCCACTCCACCGCTCA
CATCAACACCAAAACACTCTTCAATCAACCGCTATTGTCCCGGATTCCGC
TCGTCAAACACAGGAAGACATTCAATTTGTGAGTACGCTTGCGTATGAAG
ACTTCATGCACGGTCGAAATAGGCCTTCGAAATCTCTTCGTGTCTTCGCA
CGTCTTCGACGTTCATGA
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protein sequence of Gchil878.t1

>Gchil878.t1 ID=Gchil878.t1|Name=Gchil878.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=256bp
MQSALVPPVVTPEGTATTSVCSTASVTSLIPLKRRIPQAPVFITRHVPQS
SFISDASTPLPRTYYFDDDYPSIAASESTAAPEPPLSQQHPSLLSQPRRP
SVTGAIRRRISLARRQDDRTLPYAIAHKLKRTSFEQDSVLDDWNRSRNRS
STTSSRLHHSQPFTCGAFAFRSLFARHQRPSPPKSPVQQRRTLQRPLHRS
HQHQNTLQSTAIVPDSARQTQEDIQFVSTLAYEDFMHGRNRPSKSLRVFA
RLRRS*
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mRNA from alignment at tig00000017_pilon:760998..761765-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil878.t1 ID=Gchil878.t1|Name=Gchil878.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=768bp|location=Sequence derived from alignment at tig00000017_pilon:760998..761765- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGTCCGCTCTCGTTCCCCCCGTCGTCACCCCCGAAGGCACTGCTAC
CACTTCCGTGTGCTCCACCGCCTCCGTCACTAGTTTGATTCCCTTGAAGC
GCCGCATCCCGCAAGCACCCGTTTTCATCACACGACACGTTCCCCAATCC
TCCTTCATATCCGATGCCTCCACCCCCCTGCCAAGGACCTACTACTTTGA
CGACGACTACCCCTCAATCGCCGCTTCCGAGAGCACCGCCGCCCCCGAAC
CTCCGCTCTCACAACAGCACCCATCGCTCCTGTCGCAGCCAAGACGCCCC
TCCGTTACGGGCGCCATTCGTCGCCGCATCTCTCTCGCCCGCCGTCAAGA
CGATCGCACCCTTCCCTACGCCATTGCCCACAAGCTTAAGCGCACCTCAT
TCGAGCAAGATAGCGTGTTAGACGATTGGAATCGATCCAGGAACCGTTCT
TCCACAACCTCCTCCCGTTTGCATCATTCACAACCGTTCACTTGTGGCGC
CTTTGCTTTTCGCTCCTTGTTCGCCCGACATCAACGACCATCACCACCCA
AATCGCCCGTTCAACAGCGCCGTACTCTACAACGCCCACTCCACCGCTCA
CATCAACACCAAAACACTCTTCAATCAACCGCTATTGTCCCGGATTCCGC
TCGTCAAACACAGGAAGACATTCAATTTGTGAGTACGCTTGCGTATGAAG
ACTTCATGCACGGTCGAAATAGGCCTTCGAAATCTCTTCGTGTCTTCGCA
CGTCTTCGACGTTCATGA
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Coding sequence (CDS) from alignment at tig00000017_pilon:760998..761765-

>Gchil878.t1 ID=Gchil878.t1|Name=Gchil878.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=768bp|location=Sequence derived from alignment at tig00000017_pilon:760998..761765- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGTCCGCTCTCGTTCCCCCCGTCGTCACCCCCGAAGGCACTGCTAC
CACTTCCGTGTGCTCCACCGCCTCCGTCACTAGTTTGATTCCCTTGAAGC
GCCGCATCCCGCAAGCACCCGTTTTCATCACACGACACGTTCCCCAATCC
TCCTTCATATCCGATGCCTCCACCCCCCTGCCAAGGACCTACTACTTTGA
CGACGACTACCCCTCAATCGCCGCTTCCGAGAGCACCGCCGCCCCCGAAC
CTCCGCTCTCACAACAGCACCCATCGCTCCTGTCGCAGCCAAGACGCCCC
TCCGTTACGGGCGCCATTCGTCGCCGCATCTCTCTCGCCCGCCGTCAAGA
CGATCGCACCCTTCCCTACGCCATTGCCCACAAGCTTAAGCGCACCTCAT
TCGAGCAAGATAGCGTGTTAGACGATTGGAATCGATCCAGGAACCGTTCT
TCCACAACCTCCTCCCGTTTGCATCATTCACAACCGTTCACTTGTGGCGC
CTTTGCTTTTCGCTCCTTGTTCGCCCGACATCAACGACCATCACCACCCA
AATCGCCCGTTCAACAGCGCCGTACTCTACAACGCCCACTCCACCGCTCA
CATCAACACCAAAACACTCTTCAATCAACCGCTATTGTCCCGGATTCCGC
TCGTCAAACACAGGAAGACATTCAATTTGTGAGTACGCTTGCGTATGAAG
ACTTCATGCACGGTCGAAATAGGCCTTCGAAATCTCTTCGTGTCTTCGCA
CGTCTTCGACGTTCATGA
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