Gchil877.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil877.t1
Unique NameGchil877.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length89
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:749355..749787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3760.EMJ15273
PFAMsDUF1138
Max annot lvl35493|Streptophyta
Evalue0.000163
EggNOG OGs2CDH5@1|root,2S4BX@2759|Eukaryota,37W5C@33090|Viridiplantae,3GK3Y@35493|Streptophyta
DescriptionProtein of unknown function (DUF1138)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil877Gchil877Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 749355..749787 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil877.t1Gchil877.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 749355..749787 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil877.t1.stop1Gchil877.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 749355..749357 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil877.t1.CDS1Gchil877.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 749355..749479 -
Gchil877.t1.CDS2Gchil877.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 749646..749787 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil877.t1.exon1Gchil877.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 749355..749479 -
Gchil877.t1.exon2Gchil877.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 749646..749787 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil877.t1.intron1Gchil877.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000017_pilon 749480..749645 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil877.t1.start1Gchil877.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 749785..749787 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil877.t1 ID=Gchil877.t1|Name=Gchil877.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=89bp
MTIVDRSNTNWTPWPRLAGIPQRFQVFGGVAAIMGAAALLFQFRASRANV
PSTLTKEWKDATKKSFEAKEREAADPVVMNPITASRKN*
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spliced messenger RNA

>Gchil877.t1 ID=Gchil877.t1|Name=Gchil877.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=267bp|location=Sequence derived from alignment at tig00000017_pilon:749355..749787- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCATTGTCGATCGCTCCAACACGAACTGGACGCCTTGGCCGCGTCT
TGCCGGTATCCCTCAGCGATTCCAGGTCTTTGGTGGCGTCGCCGCTATCA
TGGGCGCCGCTGCCCTTCTTTTCCAGTTCCGCGCTTCTCGAGCGAATGTT
CCGAGCACTTTGACCAAGGAGTGGAAAGACGCAACTAAGAAATCTTTCGA
GGCTAAGGAACGTGAAGCAGCCGATCCTGTGGTCATGAATCCAATCACAG
CATCACGGAAAAATTAG
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protein sequence of Gchil877.t1

>Gchil877.t1 ID=Gchil877.t1|Name=Gchil877.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=89bp
MTIVDRSNTNWTPWPRLAGIPQRFQVFGGVAAIMGAAALLFQFRASRANV
PSTLTKEWKDATKKSFEAKEREAADPVVMNPITASRKN*
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mRNA from alignment at tig00000017_pilon:749355..749787-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil877.t1 ID=Gchil877.t1|Name=Gchil877.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=433bp|location=Sequence derived from alignment at tig00000017_pilon:749355..749787- (Gracilaria chilensis NLEC103_M9 male)
ATGACCATTGTCGATCGCTCCAACACGAACTGGACGCCTTGGCCGCGTCT
TGCCGGTATCCCTCAGCGATTCCAGGTCTTTGGTGGCGTCGCCGCTATCA
TGGGCGCCGCTGCCCTTCTTTTCCAGTTCCGCGCTTCTCGAGGTACGTTT
CGACCGAAATCAATTTCCATCAGCGTATTTCGATTTCACTCTTCCCCGTC
CCTTGTCAAGTTAGTAGCGGTGTGTTTCGTTTCCGTTTTGTACTCACTGT
TTCGCACATTTCCGATCGCTTGCTTTCGAATCACTGGACTGCTGTGAATA
TTTTGTAGCGAATGTTCCGAGCACTTTGACCAAGGAGTGGAAAGACGCAA
CTAAGAAATCTTTCGAGGCTAAGGAACGTGAAGCAGCCGATCCTGTGGTC
ATGAATCCAATCACAGCATCACGGAAAAATTAG
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Coding sequence (CDS) from alignment at tig00000017_pilon:749355..749787-

>Gchil877.t1 ID=Gchil877.t1|Name=Gchil877.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=267bp|location=Sequence derived from alignment at tig00000017_pilon:749355..749787- (Gracilaria chilensis NLEC103_M9 male)
ATGACCATTGTCGATCGCTCCAACACGAACTGGACGCCTTGGCCGCGTCT
TGCCGGTATCCCTCAGCGATTCCAGGTCTTTGGTGGCGTCGCCGCTATCA
TGGGCGCCGCTGCCCTTCTTTTCCAGTTCCGCGCTTCTCGAGCGAATGTT
CCGAGCACTTTGACCAAGGAGTGGAAAGACGCAACTAAGAAATCTTTCGA
GGCTAAGGAACGTGAAGCAGCCGATCCTGTGGTCATGAATCCAATCACAG
CATCACGGAAAAATTAG
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