Gchil875.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil875.t1
Unique NameGchil875.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length200
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:739271..739870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42099.EPrPV00000013541
PFAMsTyr_Deacylase
Max annot lvl121069|Pythiales
Evalue1.15e-30
EggNOG OGsCOG1490@1|root,KOG3323@2759|Eukaryota,1ME4Y@121069|Pythiales
DescriptionD-tyrosyl-tRNA(Tyr) deacylase. Source PGD
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil875Gchil875Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 739271..739870 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil875.t1.start1Gchil875.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 739271..739273 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil875.t1.CDS1Gchil875.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 739271..739870 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil875.t1.exon1Gchil875.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 739271..739870 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil875.t1.stop1Gchil875.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 739868..739870 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil875.t1Gchil875.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 739271..739870 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil875.t1 ID=Gchil875.t1|Name=Gchil875.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=200bp
MRMLPASSAPFAPLSQPPPSSFPSTPLPPLIPSPPAIAMRLVVQKVSQAA
VTSSVEAQPTVTASIHAGLCVLVGFERDDTDQDVEAAVNQLLKLRLFPDP
SSQTKNALNIVQATADLLLVSQFTLNAALKSGRPSYHRAMPPQHAASMFD
RLIERCRPVEHAGGLVRNGVFGSWMQLQLVNEGPYTICLTATNGKCQAW*
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spliced messenger RNA

>Gchil875.t1 ID=Gchil875.t1|Name=Gchil875.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=600bp|location=Sequence derived from alignment at tig00000017_pilon:739271..739870+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCATGCTCCCCGCCTCGTCCGCACCCTTCGCACCTCTGTCCCAACC
CCCACCCTCCTCCTTCCCCTCCACCCCTTTACCCCCCCTTATCCCATCCC
CCCCCGCCATCGCCATGCGGCTCGTCGTCCAAAAAGTTTCGCAGGCCGCC
GTCACCTCGTCCGTTGAGGCCCAGCCCACCGTCACAGCCTCCATCCACGC
AGGGCTCTGCGTCCTTGTCGGCTTCGAACGAGATGACACAGACCAAGACG
TCGAAGCCGCCGTCAACCAGCTCCTCAAGCTGCGCCTCTTCCCCGACCCC
TCATCTCAAACCAAAAACGCCCTCAATATCGTGCAGGCCACAGCCGATCT
CCTTCTTGTGTCACAATTCACCCTCAACGCCGCCCTCAAAAGTGGCCGCC
CGAGCTACCATCGCGCCATGCCGCCGCAACACGCTGCCTCAATGTTCGAT
CGCCTCATCGAGCGCTGTCGCCCCGTTGAGCACGCCGGCGGCCTGGTCCG
AAACGGTGTATTCGGCTCTTGGATGCAGCTGCAGTTGGTCAACGAAGGCC
CGTACACAATATGTCTCACAGCAACAAACGGAAAGTGCCAAGCATGGTAG
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protein sequence of Gchil875.t1

>Gchil875.t1 ID=Gchil875.t1|Name=Gchil875.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=200bp
MRMLPASSAPFAPLSQPPPSSFPSTPLPPLIPSPPAIAMRLVVQKVSQAA
VTSSVEAQPTVTASIHAGLCVLVGFERDDTDQDVEAAVNQLLKLRLFPDP
SSQTKNALNIVQATADLLLVSQFTLNAALKSGRPSYHRAMPPQHAASMFD
RLIERCRPVEHAGGLVRNGVFGSWMQLQLVNEGPYTICLTATNGKCQAW*
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mRNA from alignment at tig00000017_pilon:739271..739870+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil875.t1 ID=Gchil875.t1|Name=Gchil875.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=600bp|location=Sequence derived from alignment at tig00000017_pilon:739271..739870+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCATGCTCCCCGCCTCGTCCGCACCCTTCGCACCTCTGTCCCAACC
CCCACCCTCCTCCTTCCCCTCCACCCCTTTACCCCCCCTTATCCCATCCC
CCCCCGCCATCGCCATGCGGCTCGTCGTCCAAAAAGTTTCGCAGGCCGCC
GTCACCTCGTCCGTTGAGGCCCAGCCCACCGTCACAGCCTCCATCCACGC
AGGGCTCTGCGTCCTTGTCGGCTTCGAACGAGATGACACAGACCAAGACG
TCGAAGCCGCCGTCAACCAGCTCCTCAAGCTGCGCCTCTTCCCCGACCCC
TCATCTCAAACCAAAAACGCCCTCAATATCGTGCAGGCCACAGCCGATCT
CCTTCTTGTGTCACAATTCACCCTCAACGCCGCCCTCAAAAGTGGCCGCC
CGAGCTACCATCGCGCCATGCCGCCGCAACACGCTGCCTCAATGTTCGAT
CGCCTCATCGAGCGCTGTCGCCCCGTTGAGCACGCCGGCGGCCTGGTCCG
AAACGGTGTATTCGGCTCTTGGATGCAGCTGCAGTTGGTCAACGAAGGCC
CGTACACAATATGTCTCACAGCAACAAACGGAAAGTGCCAAGCATGGTAG
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Coding sequence (CDS) from alignment at tig00000017_pilon:739271..739870+

>Gchil875.t1 ID=Gchil875.t1|Name=Gchil875.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=600bp|location=Sequence derived from alignment at tig00000017_pilon:739271..739870+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCATGCTCCCCGCCTCGTCCGCACCCTTCGCACCTCTGTCCCAACC
CCCACCCTCCTCCTTCCCCTCCACCCCTTTACCCCCCCTTATCCCATCCC
CCCCCGCCATCGCCATGCGGCTCGTCGTCCAAAAAGTTTCGCAGGCCGCC
GTCACCTCGTCCGTTGAGGCCCAGCCCACCGTCACAGCCTCCATCCACGC
AGGGCTCTGCGTCCTTGTCGGCTTCGAACGAGATGACACAGACCAAGACG
TCGAAGCCGCCGTCAACCAGCTCCTCAAGCTGCGCCTCTTCCCCGACCCC
TCATCTCAAACCAAAAACGCCCTCAATATCGTGCAGGCCACAGCCGATCT
CCTTCTTGTGTCACAATTCACCCTCAACGCCGCCCTCAAAAGTGGCCGCC
CGAGCTACCATCGCGCCATGCCGCCGCAACACGCTGCCTCAATGTTCGAT
CGCCTCATCGAGCGCTGTCGCCCCGTTGAGCACGCCGGCGGCCTGGTCCG
AAACGGTGTATTCGGCTCTTGGATGCAGCTGCAGTTGGTCAACGAAGGCC
CGTACACAATATGTCTCACAGCAACAAACGGAAAGTGCCAAGCATGGTAG
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