Gchil874.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil874.t1
Unique NameGchil874.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length559
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:737059..738848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707028.1
Preferred namepfk
PFAMsPFK
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K00850
KEGG ReactionR00756,R03236,R03237,R03238,R03239,R04779
KEGG Pathwayko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04152,ko05230,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04152,map05230
KEGG ModuleM00001,M00345
GOsGO:0000166,GO:0003674,GO:0003824,GO:0003872,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008443,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0017144,GO:0018130,GO:0019200,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0020015,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035639,GO:0036094,GO:0042579,GO:0042866,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046835,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0061615,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Evalue3.38e-188
EggNOG OGsCOG0205@1|root,KOG2440@2759|Eukaryota
EC2.7.1.11
Description6-phosphofructokinase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil874Gchil874Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 737059..738848 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil874.t1Gchil874.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 737059..738848 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil874.t1.start1Gchil874.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 737059..737061 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil874.t1.CDS1Gchil874.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 737059..738514 +
Gchil874.t1.CDS2Gchil874.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 738628..738848 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil874.t1.exon1Gchil874.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 737059..738514 +
Gchil874.t1.exon2Gchil874.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 738628..738848 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil874.t1.intron1Gchil874.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000017_pilon 738515..738627 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil874.t1.stop1Gchil874.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 738846..738848 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil874.t1 ID=Gchil874.t1|Name=Gchil874.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=559bp
MSRPPTAAAPIVRTRTLDSVVIDPDDPLQSRQDLPKVIKHARVSYDHAST
PISSPRLQRFSKIVFPRPCRGLQPVRISDWTPVGSFPSPLQNNPSQLNLG
LSFVGSRETILVDIISDAENTTMSREFVRAGPRSELAFHPANQARPCIVT
CGGLCPGLNSVIRELVITLKNMYRVPRVDGIPFGYRGFYSTHLTITELTE
QRVMDIHHEGGSIIGSSRGGHDTKRICDSIIAMGYNQIFIIGGDGTHRGA
VKIFEELKKRRAMVSVVGIPKTIDNDIALIDKSFGFDTAVEEAQRSIKCA
KIEAKSAINGIGLVKLMGRHSGQIAMFATLASRDVDCCLIPEVRFELDGK
SGLFQYIEDRLRAKAHMVIVVAEGAGVDLIEREMPSTGVDASGNKKLSDV
GLWLKRRIDSDFKNRGREINIKLIDPTYEIRSVPANASDNLHCSLLAQSA
VHGAMHGFSGFSVGLINTHFVLIPMEEICRRGRTKVDVKSRMWHRVIAST
MQPSLSGQLPQSQSLIEALDGSLRMGNSKEPLIVGNNQQPTVTEPGDDSD
ESDDPLGF*
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spliced messenger RNA

>Gchil874.t1 ID=Gchil874.t1|Name=Gchil874.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1677bp|location=Sequence derived from alignment at tig00000017_pilon:737059..738848+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGCCCCCCTACGGCCGCCGCACCCATCGTGCGCACCCGCACCCT
AGACTCCGTCGTCATCGACCCCGACGACCCGCTGCAGTCCCGCCAGGACC
TGCCCAAGGTCATCAAACACGCCCGCGTCTCGTACGACCATGCAAGCACC
CCCATCTCCTCCCCGCGTCTGCAGCGCTTCTCCAAGATCGTCTTCCCGCG
CCCCTGTCGCGGTCTGCAGCCCGTCCGCATCTCCGACTGGACTCCCGTCG
GCTCCTTCCCCTCTCCGCTGCAAAACAACCCCTCCCAGCTCAATCTGGGT
CTCAGCTTTGTGGGCTCGCGCGAGACCATTCTCGTTGACATCATCTCCGA
TGCTGAGAACACCACCATGAGTCGCGAGTTTGTGCGCGCCGGACCGCGCA
GTGAGCTTGCCTTTCACCCTGCCAACCAGGCACGCCCGTGTATCGTCACC
TGCGGCGGACTGTGTCCGGGACTCAATTCCGTCATCCGCGAGCTCGTCAT
CACCCTCAAAAACATGTACCGCGTCCCGCGCGTTGACGGCATCCCCTTCG
GCTACCGCGGCTTTTACAGCACTCACCTCACCATCACCGAGCTCACCGAA
CAGCGCGTCATGGACATCCACCACGAGGGCGGCTCCATCATCGGCTCGTC
GCGCGGCGGTCATGACACCAAGCGCATCTGCGACAGCATCATCGCCATGG
GCTACAACCAGATCTTCATCATTGGCGGCGACGGCACCCACCGCGGCGCC
GTCAAAATCTTCGAAGAGCTCAAGAAGCGTCGCGCCATGGTCAGCGTCGT
CGGCATCCCCAAGACCATCGACAACGACATTGCGCTCATCGACAAGAGTT
TTGGCTTTGACACCGCCGTCGAGGAGGCACAGCGCAGCATCAAGTGCGCC
AAGATCGAGGCCAAGAGCGCCATCAACGGCATCGGCCTCGTCAAGTTGAT
GGGGCGCCACTCAGGTCAGATCGCCATGTTCGCCACTCTTGCCTCTCGCG
ACGTCGACTGCTGCCTCATCCCGGAGGTGCGCTTCGAGCTGGACGGCAAA
TCCGGCCTTTTCCAGTACATTGAGGACAGGCTGCGCGCCAAGGCGCACAT
GGTCATTGTGGTGGCCGAGGGCGCCGGCGTCGACCTCATTGAGCGCGAAA
TGCCCTCCACCGGCGTCGACGCCTCCGGCAACAAGAAGCTGTCCGACGTT
GGGCTGTGGCTCAAGCGCAGAATCGACAGCGACTTCAAGAACAGAGGGCG
CGAGATTAACATCAAGCTCATCGACCCCACGTACGAGATTCGCAGCGTGC
CCGCAAATGCCAGCGACAACTTGCACTGCAGTCTGCTGGCGCAATCAGCC
GTGCACGGCGCTATGCACGGCTTTTCAGGCTTTTCGGTCGGTCTCATCAA
CACGCACTTTGTTCTGATACCCATGGAGGAAATATGTCGCCGAGGGCGCA
CCAAAGTTGACGTGAAGAGCCGAATGTGGCACCGCGTGATTGCCTCCACA
ATGCAACCGAGCCTGTCTGGACAGTTGCCGCAGTCGCAAAGCTTGATCGA
AGCACTGGACGGTTCTTTGAGGATGGGCAATTCGAAAGAACCGCTCATAG
TGGGCAACAATCAACAGCCTACCGTGACTGAGCCTGGAGACGATTCAGAC
GAAAGCGACGACCCGCTCGGGTTCTGA
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protein sequence of Gchil874.t1

>Gchil874.t1 ID=Gchil874.t1|Name=Gchil874.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=559bp
MSRPPTAAAPIVRTRTLDSVVIDPDDPLQSRQDLPKVIKHARVSYDHAST
PISSPRLQRFSKIVFPRPCRGLQPVRISDWTPVGSFPSPLQNNPSQLNLG
LSFVGSRETILVDIISDAENTTMSREFVRAGPRSELAFHPANQARPCIVT
CGGLCPGLNSVIRELVITLKNMYRVPRVDGIPFGYRGFYSTHLTITELTE
QRVMDIHHEGGSIIGSSRGGHDTKRICDSIIAMGYNQIFIIGGDGTHRGA
VKIFEELKKRRAMVSVVGIPKTIDNDIALIDKSFGFDTAVEEAQRSIKCA
KIEAKSAINGIGLVKLMGRHSGQIAMFATLASRDVDCCLIPEVRFELDGK
SGLFQYIEDRLRAKAHMVIVVAEGAGVDLIEREMPSTGVDASGNKKLSDV
GLWLKRRIDSDFKNRGREINIKLIDPTYEIRSVPANASDNLHCSLLAQSA
VHGAMHGFSGFSVGLINTHFVLIPMEEICRRGRTKVDVKSRMWHRVIAST
MQPSLSGQLPQSQSLIEALDGSLRMGNSKEPLIVGNNQQPTVTEPGDDSD
ESDDPLGF*
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mRNA from alignment at tig00000017_pilon:737059..738848+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil874.t1 ID=Gchil874.t1|Name=Gchil874.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1790bp|location=Sequence derived from alignment at tig00000017_pilon:737059..738848+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCGCCCCCCTACGGCCGCCGCACCCATCGTGCGCACCCGCACCCT
AGACTCCGTCGTCATCGACCCCGACGACCCGCTGCAGTCCCGCCAGGACC
TGCCCAAGGTCATCAAACACGCCCGCGTCTCGTACGACCATGCAAGCACC
CCCATCTCCTCCCCGCGTCTGCAGCGCTTCTCCAAGATCGTCTTCCCGCG
CCCCTGTCGCGGTCTGCAGCCCGTCCGCATCTCCGACTGGACTCCCGTCG
GCTCCTTCCCCTCTCCGCTGCAAAACAACCCCTCCCAGCTCAATCTGGGT
CTCAGCTTTGTGGGCTCGCGCGAGACCATTCTCGTTGACATCATCTCCGA
TGCTGAGAACACCACCATGAGTCGCGAGTTTGTGCGCGCCGGACCGCGCA
GTGAGCTTGCCTTTCACCCTGCCAACCAGGCACGCCCGTGTATCGTCACC
TGCGGCGGACTGTGTCCGGGACTCAATTCCGTCATCCGCGAGCTCGTCAT
CACCCTCAAAAACATGTACCGCGTCCCGCGCGTTGACGGCATCCCCTTCG
GCTACCGCGGCTTTTACAGCACTCACCTCACCATCACCGAGCTCACCGAA
CAGCGCGTCATGGACATCCACCACGAGGGCGGCTCCATCATCGGCTCGTC
GCGCGGCGGTCATGACACCAAGCGCATCTGCGACAGCATCATCGCCATGG
GCTACAACCAGATCTTCATCATTGGCGGCGACGGCACCCACCGCGGCGCC
GTCAAAATCTTCGAAGAGCTCAAGAAGCGTCGCGCCATGGTCAGCGTCGT
CGGCATCCCCAAGACCATCGACAACGACATTGCGCTCATCGACAAGAGTT
TTGGCTTTGACACCGCCGTCGAGGAGGCACAGCGCAGCATCAAGTGCGCC
AAGATCGAGGCCAAGAGCGCCATCAACGGCATCGGCCTCGTCAAGTTGAT
GGGGCGCCACTCAGGTCAGATCGCCATGTTCGCCACTCTTGCCTCTCGCG
ACGTCGACTGCTGCCTCATCCCGGAGGTGCGCTTCGAGCTGGACGGCAAA
TCCGGCCTTTTCCAGTACATTGAGGACAGGCTGCGCGCCAAGGCGCACAT
GGTCATTGTGGTGGCCGAGGGCGCCGGCGTCGACCTCATTGAGCGCGAAA
TGCCCTCCACCGGCGTCGACGCCTCCGGCAACAAGAAGCTGTCCGACGTT
GGGCTGTGGCTCAAGCGCAGAATCGACAGCGACTTCAAGAACAGAGGGCG
CGAGATTAACATCAAGCTCATCGACCCCACGTACGAGATTCGCAGCGTGC
CCGCAAATGCCAGCGACAACTTGCACTGCAGTCTGCTGGCGCAATCAGCC
GTGCACGGCGCTATGCACGGCTTTTCAGGCTTTTCGGTCGGTCTCATCAA
CACGCACTTTGTTCTGATACCCATGGAGGAAATATGTCGCCGAGGGCGCA
CCAAAGGTATGTTTGCACTACGCGCAACAAGCACGCGAGCTTTTGTTTTG
CATCATGAATCACTGACaccacaacaacaacaacaacaacaacaCTTGTT
TGGTTTTCACTTTTTGCAGTTGACGTGAAGAGCCGAATGTGGCACCGCGT
GATTGCCTCCACAATGCAACCGAGCCTGTCTGGACAGTTGCCGCAGTCGC
AAAGCTTGATCGAAGCACTGGACGGTTCTTTGAGGATGGGCAATTCGAAA
GAACCGCTCATAGTGGGCAACAATCAACAGCCTACCGTGACTGAGCCTGG
AGACGATTCAGACGAAAGCGACGACCCGCTCGGGTTCTGA
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Coding sequence (CDS) from alignment at tig00000017_pilon:737059..738848+

>Gchil874.t1 ID=Gchil874.t1|Name=Gchil874.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1677bp|location=Sequence derived from alignment at tig00000017_pilon:737059..738848+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCGCCCCCCTACGGCCGCCGCACCCATCGTGCGCACCCGCACCCT
AGACTCCGTCGTCATCGACCCCGACGACCCGCTGCAGTCCCGCCAGGACC
TGCCCAAGGTCATCAAACACGCCCGCGTCTCGTACGACCATGCAAGCACC
CCCATCTCCTCCCCGCGTCTGCAGCGCTTCTCCAAGATCGTCTTCCCGCG
CCCCTGTCGCGGTCTGCAGCCCGTCCGCATCTCCGACTGGACTCCCGTCG
GCTCCTTCCCCTCTCCGCTGCAAAACAACCCCTCCCAGCTCAATCTGGGT
CTCAGCTTTGTGGGCTCGCGCGAGACCATTCTCGTTGACATCATCTCCGA
TGCTGAGAACACCACCATGAGTCGCGAGTTTGTGCGCGCCGGACCGCGCA
GTGAGCTTGCCTTTCACCCTGCCAACCAGGCACGCCCGTGTATCGTCACC
TGCGGCGGACTGTGTCCGGGACTCAATTCCGTCATCCGCGAGCTCGTCAT
CACCCTCAAAAACATGTACCGCGTCCCGCGCGTTGACGGCATCCCCTTCG
GCTACCGCGGCTTTTACAGCACTCACCTCACCATCACCGAGCTCACCGAA
CAGCGCGTCATGGACATCCACCACGAGGGCGGCTCCATCATCGGCTCGTC
GCGCGGCGGTCATGACACCAAGCGCATCTGCGACAGCATCATCGCCATGG
GCTACAACCAGATCTTCATCATTGGCGGCGACGGCACCCACCGCGGCGCC
GTCAAAATCTTCGAAGAGCTCAAGAAGCGTCGCGCCATGGTCAGCGTCGT
CGGCATCCCCAAGACCATCGACAACGACATTGCGCTCATCGACAAGAGTT
TTGGCTTTGACACCGCCGTCGAGGAGGCACAGCGCAGCATCAAGTGCGCC
AAGATCGAGGCCAAGAGCGCCATCAACGGCATCGGCCTCGTCAAGTTGAT
GGGGCGCCACTCAGGTCAGATCGCCATGTTCGCCACTCTTGCCTCTCGCG
ACGTCGACTGCTGCCTCATCCCGGAGGTGCGCTTCGAGCTGGACGGCAAA
TCCGGCCTTTTCCAGTACATTGAGGACAGGCTGCGCGCCAAGGCGCACAT
GGTCATTGTGGTGGCCGAGGGCGCCGGCGTCGACCTCATTGAGCGCGAAA
TGCCCTCCACCGGCGTCGACGCCTCCGGCAACAAGAAGCTGTCCGACGTT
GGGCTGTGGCTCAAGCGCAGAATCGACAGCGACTTCAAGAACAGAGGGCG
CGAGATTAACATCAAGCTCATCGACCCCACGTACGAGATTCGCAGCGTGC
CCGCAAATGCCAGCGACAACTTGCACTGCAGTCTGCTGGCGCAATCAGCC
GTGCACGGCGCTATGCACGGCTTTTCAGGCTTTTCGGTCGGTCTCATCAA
CACGCACTTTGTTCTGATACCCATGGAGGAAATATGTCGCCGAGGGCGCA
CCAAAGTTGACGTGAAGAGCCGAATGTGGCACCGCGTGATTGCCTCCACA
ATGCAACCGAGCCTGTCTGGACAGTTGCCGCAGTCGCAAAGCTTGATCGA
AGCACTGGACGGTTCTTTGAGGATGGGCAATTCGAAAGAACCGCTCATAG
TGGGCAACAATCAACAGCCTACCGTGACTGAGCCTGGAGACGATTCAGAC
GAAAGCGACGACCCGCTCGGGTTCTGA
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