Gchil8699.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8699.t1
Unique NameGchil8699.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length476
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:1301915..1303342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1352941.M877_05655
PFAMsGSDH,Laminin_G_3
Max annot lvl201174|Actinobacteria
Evalue6.11e-41
EggNOG OGsCOG2133@1|root,COG2133@2|Bacteria,2I9ZW@201174|Actinobacteria
DescriptionGlucose / Sorbosone dehydrogenase
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8699Gchil8699Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 1301915..1303342 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8699.t1.stop1Gchil8699.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 1301915..1301917 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8699.t1.CDS1Gchil8699.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 1301915..1303342 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8699.t1.exon1Gchil8699.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 1301915..1303342 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8699.t1.start1Gchil8699.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 1303340..1303342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8699.t1Gchil8699.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 1301915..1303342 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8699.t1 ID=Gchil8699.t1|Name=Gchil8699.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=476bp
MVRAGGSIFFIALFIGISRAANPVSTPIIHGGLNVHTRKFAKLPNFGNDP
AQIVCIVPHGNNIYVCTLHAVYKVNPQGYVSLYLDVAYAISSSTDRTLNM
YNKMHGGVRSIAFHPNFYQNGRVYIAAMESRPKNPSRFYYLSDTPYHTNA
DSVLLEFVHNFNTGIPDASTYRNVFRVGMPKFDHPIKQIAFFGNYLYISH
GDGSVQSATAGGGQAKDALGKILRINPLRQGKFPFTVPPDNPFIKNPGMI
NEVYALGFRNPHNICFGRNGTLYVADAGRDNIEEINVVKAGGNYGWSFRE
GTFVHKSGGGLVSGISQLPRHDAGYGYTYPAAQVGHNGNVGAGFVGQAVA
GGCPVENGSPMSGNYYYTDFPKSGKLFFSTIYELKNAKTEGPPGQLSQAR
TRQATIYYEHDNSIGTPPLKLNTLGDVVRHDREDRKGRVDIRMGRGPNGE
LYWSSKSSGRIYLFTSSVIGGPGGP*
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spliced messenger RNA

>Gchil8699.t1 ID=Gchil8699.t1|Name=Gchil8699.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at tig00000088_pilon:1301915..1303342- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCGCGCTGGTGGTTCCATTTTTTTCATAGCTCTCTTCATAGGAAT
TTCCCGGGCTGCCAATCCTGTTTCCACACCCATTATCCACGGCGGACTCA
ATGTTCACACCAGGAAATTTGCAAAACTGCCTAACTTTGGAAATGATCCA
GCCCAAATTGTCTGCATTGTTCCGCATGGAAATAACATTTATGTGTGCAC
GCTTCATGCCGTGTACAAAGTCAATCCGCAAGGATACGTTTCGCTTTATC
TCGATGTGGCTTACGCAATCTCAAGCAGTACAGATAGGACCTTAAACATG
TACAACAAAATGCATGGTGGTGTAAGAAGTATAGCGTTTCACCCCAACTT
CTATCAAAATGGAAGGGTGTACATTGCGGCCATGGAATCGAGGCCAAAGA
ATCCGTCCAGATTCTATTATTTATCGGACACTCCTTATCACACAAACGCA
GATAGTGTTCTCTTGGAGTTTGTTCACAACTTCAATACTGGTATTCCGGA
TGCATCCACCTATCGAAATGTATTCCGTGTTGGAATGCCGAAGTTTGACC
ACCCCATCAAGCAAATTGCGTTCTTCGGGAATTATTTATACATTTCTCAC
GGCGATGGGTCTGTCCAGTCTGCAACAGCTGGCGGGGGCCAGGCAAAAGA
CGCTCTTGGGAAGATACTACGGATTAATCCGCTTCGACAGGGCAAATTTC
CGTTTACTGTCCCGCCGGATAACCCGTTTATTAAGAACCCTGGAATGATT
AACGAAGTCTATGCGTTAGGATTCCGGAACCCACACAATATTTGCTTTGG
AAGGAACGGTACTCTATACGTAGCCGACGCAGGTCGAGATAATATCGAAG
AAATTAATGTGGTCAAAGCGGGTGGAAACTATGGATGGTCATTTCGTGAA
GGAACATTCGTTCACAAGAGTGGTGGCGGACTTGTATCAGGTATTTCCCA
GCTTCCTCGTCATGATGCAGGGTATGGATACACATATCCCGCTGCACAGG
TCGGCCACAATGGAAACGTAGGTGCTGGCTTTGTCGGCCAAGCTGTTGCG
GGGGGGTGTCCAGTGGAAAATGGATCTCCCATGAGCGGGAATTACTACTA
CACAGACTTCCCCAAGAGTGGAAAACTGTTCTTTTCTACAATTTATGAAC
TCAAAAATGCGAAGACCGAAGGGCCTCCTGGGCAGCTCTCACAAGCTCGT
ACCAGACAAGCCACGATTTATTATGAGCACGATAATTCCATTGGGACACC
GCCTTTGAAGCTCAACACACTTGGTGACGTGGTCAGACATGACAGAGAGG
ACAGAAAGGGGAGAGTAGATATTCGAATGGGAAGGGGTCCAAATGGAGAG
CTATACTGGTCGAGCAAGAGCAGTGGGCGTATATATTTGTTTACATCCTC
CGTCATTGGTGGTCCAGGTGGCCCATGA
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protein sequence of Gchil8699.t1

>Gchil8699.t1 ID=Gchil8699.t1|Name=Gchil8699.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=476bp
MVRAGGSIFFIALFIGISRAANPVSTPIIHGGLNVHTRKFAKLPNFGNDP
AQIVCIVPHGNNIYVCTLHAVYKVNPQGYVSLYLDVAYAISSSTDRTLNM
YNKMHGGVRSIAFHPNFYQNGRVYIAAMESRPKNPSRFYYLSDTPYHTNA
DSVLLEFVHNFNTGIPDASTYRNVFRVGMPKFDHPIKQIAFFGNYLYISH
GDGSVQSATAGGGQAKDALGKILRINPLRQGKFPFTVPPDNPFIKNPGMI
NEVYALGFRNPHNICFGRNGTLYVADAGRDNIEEINVVKAGGNYGWSFRE
GTFVHKSGGGLVSGISQLPRHDAGYGYTYPAAQVGHNGNVGAGFVGQAVA
GGCPVENGSPMSGNYYYTDFPKSGKLFFSTIYELKNAKTEGPPGQLSQAR
TRQATIYYEHDNSIGTPPLKLNTLGDVVRHDREDRKGRVDIRMGRGPNGE
LYWSSKSSGRIYLFTSSVIGGPGGP*
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mRNA from alignment at tig00000088_pilon:1301915..1303342-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8699.t1 ID=Gchil8699.t1|Name=Gchil8699.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at tig00000088_pilon:1301915..1303342- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTCGCGCTGGTGGTTCCATTTTTTTCATAGCTCTCTTCATAGGAAT
TTCCCGGGCTGCCAATCCTGTTTCCACACCCATTATCCACGGCGGACTCA
ATGTTCACACCAGGAAATTTGCAAAACTGCCTAACTTTGGAAATGATCCA
GCCCAAATTGTCTGCATTGTTCCGCATGGAAATAACATTTATGTGTGCAC
GCTTCATGCCGTGTACAAAGTCAATCCGCAAGGATACGTTTCGCTTTATC
TCGATGTGGCTTACGCAATCTCAAGCAGTACAGATAGGACCTTAAACATG
TACAACAAAATGCATGGTGGTGTAAGAAGTATAGCGTTTCACCCCAACTT
CTATCAAAATGGAAGGGTGTACATTGCGGCCATGGAATCGAGGCCAAAGA
ATCCGTCCAGATTCTATTATTTATCGGACACTCCTTATCACACAAACGCA
GATAGTGTTCTCTTGGAGTTTGTTCACAACTTCAATACTGGTATTCCGGA
TGCATCCACCTATCGAAATGTATTCCGTGTTGGAATGCCGAAGTTTGACC
ACCCCATCAAGCAAATTGCGTTCTTCGGGAATTATTTATACATTTCTCAC
GGCGATGGGTCTGTCCAGTCTGCAACAGCTGGCGGGGGCCAGGCAAAAGA
CGCTCTTGGGAAGATACTACGGATTAATCCGCTTCGACAGGGCAAATTTC
CGTTTACTGTCCCGCCGGATAACCCGTTTATTAAGAACCCTGGAATGATT
AACGAAGTCTATGCGTTAGGATTCCGGAACCCACACAATATTTGCTTTGG
AAGGAACGGTACTCTATACGTAGCCGACGCAGGTCGAGATAATATCGAAG
AAATTAATGTGGTCAAAGCGGGTGGAAACTATGGATGGTCATTTCGTGAA
GGAACATTCGTTCACAAGAGTGGTGGCGGACTTGTATCAGGTATTTCCCA
GCTTCCTCGTCATGATGCAGGGTATGGATACACATATCCCGCTGCACAGG
TCGGCCACAATGGAAACGTAGGTGCTGGCTTTGTCGGCCAAGCTGTTGCG
GGGGGGTGTCCAGTGGAAAATGGATCTCCCATGAGCGGGAATTACTACTA
CACAGACTTCCCCAAGAGTGGAAAACTGTTCTTTTCTACAATTTATGAAC
TCAAAAATGCGAAGACCGAAGGGCCTCCTGGGCAGCTCTCACAAGCTCGT
ACCAGACAAGCCACGATTTATTATGAGCACGATAATTCCATTGGGACACC
GCCTTTGAAGCTCAACACACTTGGTGACGTGGTCAGACATGACAGAGAGG
ACAGAAAGGGGAGAGTAGATATTCGAATGGGAAGGGGTCCAAATGGAGAG
CTATACTGGTCGAGCAAGAGCAGTGGGCGTATATATTTGTTTACATCCTC
CGTCATTGGTGGTCCAGGTGGCCCATGA
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Coding sequence (CDS) from alignment at tig00000088_pilon:1301915..1303342-

>Gchil8699.t1 ID=Gchil8699.t1|Name=Gchil8699.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1428bp|location=Sequence derived from alignment at tig00000088_pilon:1301915..1303342- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTCGCGCTGGTGGTTCCATTTTTTTCATAGCTCTCTTCATAGGAAT
TTCCCGGGCTGCCAATCCTGTTTCCACACCCATTATCCACGGCGGACTCA
ATGTTCACACCAGGAAATTTGCAAAACTGCCTAACTTTGGAAATGATCCA
GCCCAAATTGTCTGCATTGTTCCGCATGGAAATAACATTTATGTGTGCAC
GCTTCATGCCGTGTACAAAGTCAATCCGCAAGGATACGTTTCGCTTTATC
TCGATGTGGCTTACGCAATCTCAAGCAGTACAGATAGGACCTTAAACATG
TACAACAAAATGCATGGTGGTGTAAGAAGTATAGCGTTTCACCCCAACTT
CTATCAAAATGGAAGGGTGTACATTGCGGCCATGGAATCGAGGCCAAAGA
ATCCGTCCAGATTCTATTATTTATCGGACACTCCTTATCACACAAACGCA
GATAGTGTTCTCTTGGAGTTTGTTCACAACTTCAATACTGGTATTCCGGA
TGCATCCACCTATCGAAATGTATTCCGTGTTGGAATGCCGAAGTTTGACC
ACCCCATCAAGCAAATTGCGTTCTTCGGGAATTATTTATACATTTCTCAC
GGCGATGGGTCTGTCCAGTCTGCAACAGCTGGCGGGGGCCAGGCAAAAGA
CGCTCTTGGGAAGATACTACGGATTAATCCGCTTCGACAGGGCAAATTTC
CGTTTACTGTCCCGCCGGATAACCCGTTTATTAAGAACCCTGGAATGATT
AACGAAGTCTATGCGTTAGGATTCCGGAACCCACACAATATTTGCTTTGG
AAGGAACGGTACTCTATACGTAGCCGACGCAGGTCGAGATAATATCGAAG
AAATTAATGTGGTCAAAGCGGGTGGAAACTATGGATGGTCATTTCGTGAA
GGAACATTCGTTCACAAGAGTGGTGGCGGACTTGTATCAGGTATTTCCCA
GCTTCCTCGTCATGATGCAGGGTATGGATACACATATCCCGCTGCACAGG
TCGGCCACAATGGAAACGTAGGTGCTGGCTTTGTCGGCCAAGCTGTTGCG
GGGGGGTGTCCAGTGGAAAATGGATCTCCCATGAGCGGGAATTACTACTA
CACAGACTTCCCCAAGAGTGGAAAACTGTTCTTTTCTACAATTTATGAAC
TCAAAAATGCGAAGACCGAAGGGCCTCCTGGGCAGCTCTCACAAGCTCGT
ACCAGACAAGCCACGATTTATTATGAGCACGATAATTCCATTGGGACACC
GCCTTTGAAGCTCAACACACTTGGTGACGTGGTCAGACATGACAGAGAGG
ACAGAAAGGGGAGAGTAGATATTCGAATGGGAAGGGGTCCAAATGGAGAG
CTATACTGGTCGAGCAAGAGCAGTGGGCGTATATATTTGTTTACATCCTC
CGTCATTGGTGGTCCAGGTGGCCCATGA
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