Gchil8697.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8697.t1
Unique Name	Gchil8697.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	678

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:1295407..1297440 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3880.AET02517
PFAMs	WD40
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K14961
KEGG Pathway	ko04934,map04934
GOs	GO:0000003,GO:0001067,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006325,GO:0006464,GO:0006479,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0008213,GO:0009791,GO:0009987,GO:0010228,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0018022,GO:0018193,GO:0018205,GO:0019538,GO:0022414,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034708,GO:0034968,GO:0035064,GO:0035097,GO:0036211,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043627,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044665,GO:0044666,GO:0048188,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051276,GO:0051568,GO:0051716,GO:0061458,GO:0070013,GO:0071339,GO:0071704,GO:0071840,GO:0097159,GO:0140030,GO:0140034,GO:1901363,GO:1901564,GO:1902494,GO:1990234
Evalue	1.27e-49
EggNOG OGs	KOG1273@1\|root,KOG1273@2759\|Eukaryota,37K3P@33090\|Viridiplantae,3GARG@35493\|Streptophyta,4JEVA@91835\|fabids
Description	Retinoblastoma-binding protein
COG category	S
BRITE	ko00000,ko00001,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8697	Gchil8697	Gracilaria chilensis NLEC103_M9 male	gene	tig00000088_pilon 1295407..1297440 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8697.t1.stop1	Gchil8697.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000088_pilon 1295407..1295409 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8697.t1.CDS1	Gchil8697.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000088_pilon 1295407..1297440 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8697.t1.exon1	Gchil8697.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000088_pilon 1295407..1297440 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8697.t1.start1	Gchil8697.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000088_pilon 1297438..1297440 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8697.t1	Gchil8697.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000088_pilon 1295407..1297440 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000088_pilon:1295407..1297440-
coding sequence from alignment at tig00000088_pilon:1295407..1297440-

mRNA sequence

>Gchil8697.t1 ID=Gchil8697.t1|Name=Gchil8697.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=678bp
MNRALLNPFEAADLPRGIEEVLEQDSGTCMRFNSHGNLLAVGTRTGQVIL
WDFDTLSIACVLGDSNIRFPAVTSLSFPAPRNGSMVLAAHANGIVRLYDT
LSRSIASEIAFQIPIIQVVSHPKVSDIALVVPKNSHPLLLHLRRGVYEAE
TKLFQAVQDPEQLIYFNASEQQRDVLGKSVPHTMSVRPPNSFGNHKMASV
PNKEDHIACSVLCTPYEFEKGVAVESSGTKRKSPYYVMFTRKGDCILRGG
QTGLVRSFKLEQSSSQMFPTALCFSAVTVPGRAPIRTIQFSRKGDTVLIN
SQDRIMRLFFLEQVINPSEKDLAKPPMMDLNSTFAELVSKAQCQSACFSR
DGDFVLGAMEGTDHRIHVWRAADGFLDLSLEGPRDDVVQILWHPMRPVFT
SLSTSGCVYVWMKNFTENWSAFAAEFNELEANEEYVEAEDEFDLKDPEDD
EKRLEQREKEEAEDVNIDVCDKLGWFSSESDEEDTYFYVPAVPEGDSSVG
YELLSERIISEKIREDSGRIEEKEKKTKQFDVDEVIVTVENGRKRKAEAP
NMCMASQPKRSRCAMRNRDRALKCDLNGQKGNVKPISNAGKWRDNVGGCE
LEIVPDRDGEVLVCTMDGNSDDAGGKCDQGAEVALINEDSENWVTTKTKE
GELVDEEVLEQGAVLSDQEFNDTASAG*

spliced messenger RNA

>Gchil8697.t1 ID=Gchil8697.t1|Name=Gchil8697.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2034bp|location=Sequence derived from alignment at tig00000088_pilon:1295407..1297440- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCGTGCTCTGTTAAATCCTTTTGAGGCGGCGGATCTTCCTCGTGG
AATAGAGGAAGTTTTAGAACAAGATTCTGGAACATGCATGCGTTTCAACA
GTCATGGTAATCTTCTTGCAGTTGGTACCCGAACCGGCCAAGTAATTTTA
TGGGACTTTGACACTCTGTCCATTGCGTGCGTTCTGGGCGATAGTAACAT
TCGATTCCCTGCAGTCACTTCCCTATCATTTCCTGCACCAAGAAACGGTT
CTATGGTGTTGGCTGCTCATGCAAACGGCATTGTTCGCTTATACGACACG
CTCTCTCGATCAATAGCGTCGGAAATTGCGTTTCAGATACCTATCATTCA
AGTCGTCTCCCATCCCAAGGTTTCAGATATTGCTCTGGTTGTGCCGAAGA
ATTCCCATCCACTTCTTCTGCATCTTCGAAGAGGTGTATATGAAGCGGAG
ACTAAACTGTTTCAAGCAGTACAGGATCCAGAGCAGCTTATCTACTTCAA
TGCTTCCGAACAACAACGCGATGTACTTGGGAAATCTGTACCTCATACAA
TGTCCGTTCGCCCCCCTAATTCGTTCGGAAATCACAAGATGGCTAGCGTT
CCGAACAAAGAAGATCACATTGCGTGTTCTGTTCTGTGTACGCCTTATGA
ATTTGAAAAAGGGGTAGCGGTTGAGAGCAGCGGAACGAAACGGAAGAGTC
CTTATTACGTAATGTTTACTCGAAAAGGAGATTGTATACTGAGAGGGGGG
CAAACTGGGCTCGTGAGATCCTTTAAGTTGGAGCAGTCTTCGAGTCAAAT
GTTTCCAACAGCACTTTGCTTTTCTGCAGTTACAGTTCCGGGAAGGGCTC
CTATTCGCACAATTCAGTTTTCTCGGAAGGGGGACACCGTGCTCATTAAT
TCTCAAGATCGTATCATGCGACTATTTTTTCTTGAGCAGGTCATCAATCC
ATCAGAAAAAGATTTGGCGAAACCGCCCATGATGGACCTCAACAGCACCT
TTGCTGAGCTAGTCAGCAAAGCACAATGCCAAAGCGCTTGTTTCTCCCGT
GACGGCGATTTTGTGTTAGGGGCGATGGAAGGCACAGACCATCGCATTCA
TGTATGGAGAGCTGCAGATGGATTCCTGGATCTTAGTCTGGAAGGGCCTC
GCGACGACGTGGTGCAGATCTTATGGCATCCCATGCGCCCTGTGTTTACT
TCTCTCTCTACAAGCGGATGTGTCTATGTATGGATGAAGAATTTTACAGA
GAATTGGAGCGCGTTTGCCGCTGAGTTTAATGAATTGGAGGCTAACGAAG
AATATGTTGAGGCAGAGGACGAGTTTGATCTAAAGGACCCAGAAGATGAT
GAGAAACGTTTAGAACAGCGTGAGAAAGAGGAAGCAGAGGACGTTAACAT
TGACGTTTGCGACAAACTGGGTTGGTTCTCATCCGAATCAGACGAAGAAG
ATACATATTTCTATGTTCCAGCTGTTCCAGAGGGAGATTCTAGTGTGGGG
TATGAATTACTGTCAGAACGGATCATTTCCGAAAAGATCCGGGAAGACAG
TGGAAGAATCGAGGAGAAGGAAAAAAAGACGAAGCAATTTGACGTGGATG
AGGTTATAGTCACCGTTGAGAATGGCCGAAAGCGAAAGGCGGAAGCGCCA
AATATGTGCATGGCATCCCAACCAAAACGGTCGCGCTGTGCGATGAGAAA
TAGGGACCGTGCGTTGAAATGCGATCTAAACGGGCAAAAGGGCAATGTCA
AGCCCATTTCAAACGCGGGAAAGTGGCGTGACAATGTGGGTGGTTGTGAA
TTGGAAATCGTACCCGACAGAGATGGGGAAGTTTTGGTGTGTACCATGGA
TGGAAATTCAGATGATGCTGGTGGCAAATGTGATCAAGGAGCAGAGGTGG
CGCTCATAAATGAAGATTCGGAAAATTGGGTAACAACCAAAACGAAGGAG
GGTGAATTGGTTGATGAGGAAGTCCTTGAGCAGGGAGCTGTTCTGAGCGA
TCAAGAGTTCAATGACACGGCGAGTGCTGGATAG

protein sequence of Gchil8697.t1

>Gchil8697.t1 ID=Gchil8697.t1|Name=Gchil8697.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=678bp
MNRALLNPFEAADLPRGIEEVLEQDSGTCMRFNSHGNLLAVGTRTGQVIL
WDFDTLSIACVLGDSNIRFPAVTSLSFPAPRNGSMVLAAHANGIVRLYDT
LSRSIASEIAFQIPIIQVVSHPKVSDIALVVPKNSHPLLLHLRRGVYEAE
TKLFQAVQDPEQLIYFNASEQQRDVLGKSVPHTMSVRPPNSFGNHKMASV
PNKEDHIACSVLCTPYEFEKGVAVESSGTKRKSPYYVMFTRKGDCILRGG
QTGLVRSFKLEQSSSQMFPTALCFSAVTVPGRAPIRTIQFSRKGDTVLIN
SQDRIMRLFFLEQVINPSEKDLAKPPMMDLNSTFAELVSKAQCQSACFSR
DGDFVLGAMEGTDHRIHVWRAADGFLDLSLEGPRDDVVQILWHPMRPVFT
SLSTSGCVYVWMKNFTENWSAFAAEFNELEANEEYVEAEDEFDLKDPEDD
EKRLEQREKEEAEDVNIDVCDKLGWFSSESDEEDTYFYVPAVPEGDSSVG
YELLSERIISEKIREDSGRIEEKEKKTKQFDVDEVIVTVENGRKRKAEAP
NMCMASQPKRSRCAMRNRDRALKCDLNGQKGNVKPISNAGKWRDNVGGCE
LEIVPDRDGEVLVCTMDGNSDDAGGKCDQGAEVALINEDSENWVTTKTKE
GELVDEEVLEQGAVLSDQEFNDTASAG*

mRNA from alignment at tig00000088_pilon:1295407..1297440-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8697.t1 ID=Gchil8697.t1|Name=Gchil8697.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2034bp|location=Sequence derived from alignment at tig00000088_pilon:1295407..1297440- (Gracilaria chilensis NLEC103_M9 male)
ATGAACCGTGCTCTGTTAAATCCTTTTGAGGCGGCGGATCTTCCTCGTGG
AATAGAGGAAGTTTTAGAACAAGATTCTGGAACATGCATGCGTTTCAACA
GTCATGGTAATCTTCTTGCAGTTGGTACCCGAACCGGCCAAGTAATTTTA
TGGGACTTTGACACTCTGTCCATTGCGTGCGTTCTGGGCGATAGTAACAT
TCGATTCCCTGCAGTCACTTCCCTATCATTTCCTGCACCAAGAAACGGTT
CTATGGTGTTGGCTGCTCATGCAAACGGCATTGTTCGCTTATACGACACG
CTCTCTCGATCAATAGCGTCGGAAATTGCGTTTCAGATACCTATCATTCA
AGTCGTCTCCCATCCCAAGGTTTCAGATATTGCTCTGGTTGTGCCGAAGA
ATTCCCATCCACTTCTTCTGCATCTTCGAAGAGGTGTATATGAAGCGGAG
ACTAAACTGTTTCAAGCAGTACAGGATCCAGAGCAGCTTATCTACTTCAA
TGCTTCCGAACAACAACGCGATGTACTTGGGAAATCTGTACCTCATACAA
TGTCCGTTCGCCCCCCTAATTCGTTCGGAAATCACAAGATGGCTAGCGTT
CCGAACAAAGAAGATCACATTGCGTGTTCTGTTCTGTGTACGCCTTATGA
ATTTGAAAAAGGGGTAGCGGTTGAGAGCAGCGGAACGAAACGGAAGAGTC
CTTATTACGTAATGTTTACTCGAAAAGGAGATTGTATACTGAGAGGGGGG
CAAACTGGGCTCGTGAGATCCTTTAAGTTGGAGCAGTCTTCGAGTCAAAT
GTTTCCAACAGCACTTTGCTTTTCTGCAGTTACAGTTCCGGGAAGGGCTC
CTATTCGCACAATTCAGTTTTCTCGGAAGGGGGACACCGTGCTCATTAAT
TCTCAAGATCGTATCATGCGACTATTTTTTCTTGAGCAGGTCATCAATCC
ATCAGAAAAAGATTTGGCGAAACCGCCCATGATGGACCTCAACAGCACCT
TTGCTGAGCTAGTCAGCAAAGCACAATGCCAAAGCGCTTGTTTCTCCCGT
GACGGCGATTTTGTGTTAGGGGCGATGGAAGGCACAGACCATCGCATTCA
TGTATGGAGAGCTGCAGATGGATTCCTGGATCTTAGTCTGGAAGGGCCTC
GCGACGACGTGGTGCAGATCTTATGGCATCCCATGCGCCCTGTGTTTACT
TCTCTCTCTACAAGCGGATGTGTCTATGTATGGATGAAGAATTTTACAGA
GAATTGGAGCGCGTTTGCCGCTGAGTTTAATGAATTGGAGGCTAACGAAG
AATATGTTGAGGCAGAGGACGAGTTTGATCTAAAGGACCCAGAAGATGAT
GAGAAACGTTTAGAACAGCGTGAGAAAGAGGAAGCAGAGGACGTTAACAT
TGACGTTTGCGACAAACTGGGTTGGTTCTCATCCGAATCAGACGAAGAAG
ATACATATTTCTATGTTCCAGCTGTTCCAGAGGGAGATTCTAGTGTGGGG
TATGAATTACTGTCAGAACGGATCATTTCCGAAAAGATCCGGGAAGACAG
TGGAAGAATCGAGGAGAAGGAAAAAAAGACGAAGCAATTTGACGTGGATG
AGGTTATAGTCACCGTTGAGAATGGCCGAAAGCGAAAGGCGGAAGCGCCA
AATATGTGCATGGCATCCCAACCAAAACGGTCGCGCTGTGCGATGAGAAA
TAGGGACCGTGCGTTGAAATGCGATCTAAACGGGCAAAAGGGCAATGTCA
AGCCCATTTCAAACGCGGGAAAGTGGCGTGACAATGTGGGTGGTTGTGAA
TTGGAAATCGTACCCGACAGAGATGGGGAAGTTTTGGTGTGTACCATGGA
TGGAAATTCAGATGATGCTGGTGGCAAATGTGATCAAGGAGCAGAGGTGG
CGCTCATAAATGAAGATTCGGAAAATTGGGTAACAACCAAAACGAAGGAG
GGTGAATTGGTTGATGAGGAAGTCCTTGAGCAGGGAGCTGTTCTGAGCGA
TCAAGAGTTCAATGACACGGCGAGTGCTGGATAG

Coding sequence (CDS) from alignment at tig00000088_pilon:1295407..1297440-

>Gchil8697.t1 ID=Gchil8697.t1|Name=Gchil8697.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2034bp|location=Sequence derived from alignment at tig00000088_pilon:1295407..1297440- (Gracilaria chilensis NLEC103_M9 male)
ATGAACCGTGCTCTGTTAAATCCTTTTGAGGCGGCGGATCTTCCTCGTGG
AATAGAGGAAGTTTTAGAACAAGATTCTGGAACATGCATGCGTTTCAACA
GTCATGGTAATCTTCTTGCAGTTGGTACCCGAACCGGCCAAGTAATTTTA
TGGGACTTTGACACTCTGTCCATTGCGTGCGTTCTGGGCGATAGTAACAT
TCGATTCCCTGCAGTCACTTCCCTATCATTTCCTGCACCAAGAAACGGTT
CTATGGTGTTGGCTGCTCATGCAAACGGCATTGTTCGCTTATACGACACG
CTCTCTCGATCAATAGCGTCGGAAATTGCGTTTCAGATACCTATCATTCA
AGTCGTCTCCCATCCCAAGGTTTCAGATATTGCTCTGGTTGTGCCGAAGA
ATTCCCATCCACTTCTTCTGCATCTTCGAAGAGGTGTATATGAAGCGGAG
ACTAAACTGTTTCAAGCAGTACAGGATCCAGAGCAGCTTATCTACTTCAA
TGCTTCCGAACAACAACGCGATGTACTTGGGAAATCTGTACCTCATACAA
TGTCCGTTCGCCCCCCTAATTCGTTCGGAAATCACAAGATGGCTAGCGTT
CCGAACAAAGAAGATCACATTGCGTGTTCTGTTCTGTGTACGCCTTATGA
ATTTGAAAAAGGGGTAGCGGTTGAGAGCAGCGGAACGAAACGGAAGAGTC
CTTATTACGTAATGTTTACTCGAAAAGGAGATTGTATACTGAGAGGGGGG
CAAACTGGGCTCGTGAGATCCTTTAAGTTGGAGCAGTCTTCGAGTCAAAT
GTTTCCAACAGCACTTTGCTTTTCTGCAGTTACAGTTCCGGGAAGGGCTC
CTATTCGCACAATTCAGTTTTCTCGGAAGGGGGACACCGTGCTCATTAAT
TCTCAAGATCGTATCATGCGACTATTTTTTCTTGAGCAGGTCATCAATCC
ATCAGAAAAAGATTTGGCGAAACCGCCCATGATGGACCTCAACAGCACCT
TTGCTGAGCTAGTCAGCAAAGCACAATGCCAAAGCGCTTGTTTCTCCCGT
GACGGCGATTTTGTGTTAGGGGCGATGGAAGGCACAGACCATCGCATTCA
TGTATGGAGAGCTGCAGATGGATTCCTGGATCTTAGTCTGGAAGGGCCTC
GCGACGACGTGGTGCAGATCTTATGGCATCCCATGCGCCCTGTGTTTACT
TCTCTCTCTACAAGCGGATGTGTCTATGTATGGATGAAGAATTTTACAGA
GAATTGGAGCGCGTTTGCCGCTGAGTTTAATGAATTGGAGGCTAACGAAG
AATATGTTGAGGCAGAGGACGAGTTTGATCTAAAGGACCCAGAAGATGAT
GAGAAACGTTTAGAACAGCGTGAGAAAGAGGAAGCAGAGGACGTTAACAT
TGACGTTTGCGACAAACTGGGTTGGTTCTCATCCGAATCAGACGAAGAAG
ATACATATTTCTATGTTCCAGCTGTTCCAGAGGGAGATTCTAGTGTGGGG
TATGAATTACTGTCAGAACGGATCATTTCCGAAAAGATCCGGGAAGACAG
TGGAAGAATCGAGGAGAAGGAAAAAAAGACGAAGCAATTTGACGTGGATG
AGGTTATAGTCACCGTTGAGAATGGCCGAAAGCGAAAGGCGGAAGCGCCA
AATATGTGCATGGCATCCCAACCAAAACGGTCGCGCTGTGCGATGAGAAA
TAGGGACCGTGCGTTGAAATGCGATCTAAACGGGCAAAAGGGCAATGTCA
AGCCCATTTCAAACGCGGGAAAGTGGCGTGACAATGTGGGTGGTTGTGAA
TTGGAAATCGTACCCGACAGAGATGGGGAAGTTTTGGTGTGTACCATGGA
TGGAAATTCAGATGATGCTGGTGGCAAATGTGATCAAGGAGCAGAGGTGG
CGCTCATAAATGAAGATTCGGAAAATTGGGTAACAACCAAAACGAAGGAG
GGTGAATTGGTTGATGAGGAAGTCCTTGAGCAGGGAGCTGTTCTGAGCGA
TCAAGAGTTCAATGACACGGCGAGTGCTGGATAG