Gchil8696.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8696.t1
Unique NameGchil8696.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length71
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:1294783..1295075 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4155.Migut.H01785.1.p
PFAMsATP_synt_H
Max annot lvl35493|Streptophyta
KEGG koko:K02153
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04145,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map01100,map04145,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00160
Evalue2.8e-07
EggNOG OGsKOG3500@1|root,KOG3500@2759|Eukaryota,37WC1@33090|Viridiplantae,3GK3K@35493|Streptophyta,44U8E@71274|asterids
DescriptionATP synthase subunit H
COG categoryC
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8696Gchil8696Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 1294783..1295075 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8696.t1Gchil8696.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 1294783..1295075 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8696.t1.start1Gchil8696.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 1294783..1294785 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8696.t1.CDS1Gchil8696.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 1294783..1294883 +
Gchil8696.t1.CDS2Gchil8696.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 1294964..1295075 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8696.t1.exon1Gchil8696.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 1294783..1294883 +
Gchil8696.t1.exon2Gchil8696.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 1294964..1295075 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8696.t1.intron1Gchil8696.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000088_pilon 1294884..1294963 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8696.t1.stop1Gchil8696.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 1295073..1295075 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8696.t1 ID=Gchil8696.t1|Name=Gchil8696.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=71bp
MGALLTGTVIFLILGLISYFIVSAIYRNDKDAQALGQLSVVLATVCMYIM
WATCYLHQLHPLVRPIKGMH*
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spliced messenger RNA

>Gchil8696.t1 ID=Gchil8696.t1|Name=Gchil8696.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=213bp|location=Sequence derived from alignment at tig00000088_pilon:1294783..1295075+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCGCTGCTAACCGGAACTGTTATCTTTCTCATCCTCGGCCTCAT
CTCATACTTCATTGTGTCCGCCATCTACCGAAACGACAAGGATGCCCAAG
CTCTCGGTCAATTAAGCGTCGTTCTTGCAACCGTTTGCATGTATATCATG
TGGGCTACATGCTACCTCCATCAACTTCACCCCCTTGTGCGACCCATAAA
AGGGATGCACTGA
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protein sequence of Gchil8696.t1

>Gchil8696.t1 ID=Gchil8696.t1|Name=Gchil8696.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=71bp
MGALLTGTVIFLILGLISYFIVSAIYRNDKDAQALGQLSVVLATVCMYIM
WATCYLHQLHPLVRPIKGMH*
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mRNA from alignment at tig00000088_pilon:1294783..1295075+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8696.t1 ID=Gchil8696.t1|Name=Gchil8696.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=293bp|location=Sequence derived from alignment at tig00000088_pilon:1294783..1295075+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGCGCTGCTAACCGGAACTGTTATCTTTCTCATCCTCGGCCTCAT
CTCATACTTCATTGTGTCCGCCATCTACCGAAACGACAAGGATGCCCAAG
CGTAAGTCCATTCATTTCCACAACCTGGAAGTTCCTCACTATCGTACTAA
CGCTTCTATGAGCTTATTCACCCATCCACAGTCTCGGTCAATTAAGCGTC
GTTCTTGCAACCGTTTGCATGTATATCATGTGGGCTACATGCTACCTCCA
TCAACTTCACCCCCTTGTGCGACCCATAAAAGGGATGCACTGA
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Coding sequence (CDS) from alignment at tig00000088_pilon:1294783..1295075+

>Gchil8696.t1 ID=Gchil8696.t1|Name=Gchil8696.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=213bp|location=Sequence derived from alignment at tig00000088_pilon:1294783..1295075+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGCGCTGCTAACCGGAACTGTTATCTTTCTCATCCTCGGCCTCAT
CTCATACTTCATTGTGTCCGCCATCTACCGAAACGACAAGGATGCCCAAG
CTCTCGGTCAATTAAGCGTCGTTCTTGCAACCGTTTGCATGTATATCATG
TGGGCTACATGCTACCTCCATCAACTTCACCCCCTTGTGCGACCCATAAA
AGGGATGCACTGA
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