Gchil869.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil869.t1
Unique NameGchil869.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length279
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:717015..717851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703145.1
PFAMsIPK
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K07756
KEGG ReactionR09087,R10548
KEGG Pathwayko04070,ko04138,map04070,map04138
Evalue8.94e-31
EggNOG OGsKOG1620@1|root,KOG1620@2759|Eukaryota
EC2.7.4.21
Descriptioninositol phosphate biosynthetic process
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil869Gchil869Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 717015..717851 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil869.t1.stop1Gchil869.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 717015..717017 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil869.t1.CDS1Gchil869.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 717015..717851 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil869.t1.exon1Gchil869.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 717015..717851 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil869.t1.start1Gchil869.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 717849..717851 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil869.t1Gchil869.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 717015..717851 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil869.t1 ID=Gchil869.t1|Name=Gchil869.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=279bp
MDAPPGSHYAIQVAGHQLIRQSPTPGRILKPWSPKEHAFYRTIHAPHFPP
HLHWLRAVTPMFHGVHCTPSTTSTTAARWLQLEDLNSPFVKPCVMDVKIG
FRHYDDDASQRKRVSQILSANATTTATCAVRFVGTRSFKRTTSPTCDRGR
FETRDKAYGRALEQNHLLPELIWFFSDNFCFDALSAQHTLNALRHICQNF
RAQKRFFFYSSSLLVIYEGAKSAQHYPRVDVRMIDFSHTVHSNGAPDIGY
LHGLEYMLHLLSEALRFQARPHSVESHP*
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spliced messenger RNA

>Gchil869.t1 ID=Gchil869.t1|Name=Gchil869.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00000017_pilon:717015..717851- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCGCCGCCGGGGAGCCACTACGCCATACAGGTTGCCGGCCACCA
GCTCATCAGACAGTCGCCCACGCCCGGTCGCATCCTCAAACCGTGGTCGC
CCAAGGAACATGCCTTTTACCGCACCATCCACGCGCCCCACTTCCCGCCT
CACCTGCATTGGCTGCGCGCCGTCACCCCCATGTTCCACGGCGTGCATTG
CACCCCGTCCACCACCTCCACTACCGCCGCCCGCTGGCTGCAACTCGAGG
ACCTCAACTCCCCCTTCGTCAAGCCCTGCGTCATGGACGTCAAAATTGGC
TTTCGTCACTACGACGATGATGCGTCGCAACGCAAACGTGTCTCACAAAT
TCTCTCCGCAAATGCCACCACAACCGCCACCTGTGCCGTTCGTTTTGTCG
GAACTCGCTCCTTCAAACGAACCACTTCCCCCACTTGTGACCGCGGTCGC
TTCGAGACGCGCGACAAGGCGTACGGCAGAGCGCTTGAGCAGAATCATCT
GTTACCGGAACTCATCTGGTTTTTTTCCGACAACTTCTGCTTTGACGCAC
TCAGCGCTCAACACACCTTGAATGCATTACGCCATATTTGTCAAAACTTT
CGCGCTCAGAAACGGTTTTTTTTCTACTCTTCTTCCTTGCTTGTCATATA
TGAAGGAGCGAAGAGCGCTCAACATTATCCGCGTGTGGACGTGCGAATGA
TTGACTTTTCTCATACTGTCCATTCGAACGGCGCTCCAGACATTGGATAT
CTTCACGGTCTTGAGTACATGCTTCATCTCTTGTCCGAAGCCCTGCGTTT
TCAAGCGCGCCCACACTCTGTCGAATCACACCCGTAA
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protein sequence of Gchil869.t1

>Gchil869.t1 ID=Gchil869.t1|Name=Gchil869.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=279bp
MDAPPGSHYAIQVAGHQLIRQSPTPGRILKPWSPKEHAFYRTIHAPHFPP
HLHWLRAVTPMFHGVHCTPSTTSTTAARWLQLEDLNSPFVKPCVMDVKIG
FRHYDDDASQRKRVSQILSANATTTATCAVRFVGTRSFKRTTSPTCDRGR
FETRDKAYGRALEQNHLLPELIWFFSDNFCFDALSAQHTLNALRHICQNF
RAQKRFFFYSSSLLVIYEGAKSAQHYPRVDVRMIDFSHTVHSNGAPDIGY
LHGLEYMLHLLSEALRFQARPHSVESHP*
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mRNA from alignment at tig00000017_pilon:717015..717851-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil869.t1 ID=Gchil869.t1|Name=Gchil869.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00000017_pilon:717015..717851- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGCGCCGCCGGGGAGCCACTACGCCATACAGGTTGCCGGCCACCA
GCTCATCAGACAGTCGCCCACGCCCGGTCGCATCCTCAAACCGTGGTCGC
CCAAGGAACATGCCTTTTACCGCACCATCCACGCGCCCCACTTCCCGCCT
CACCTGCATTGGCTGCGCGCCGTCACCCCCATGTTCCACGGCGTGCATTG
CACCCCGTCCACCACCTCCACTACCGCCGCCCGCTGGCTGCAACTCGAGG
ACCTCAACTCCCCCTTCGTCAAGCCCTGCGTCATGGACGTCAAAATTGGC
TTTCGTCACTACGACGATGATGCGTCGCAACGCAAACGTGTCTCACAAAT
TCTCTCCGCAAATGCCACCACAACCGCCACCTGTGCCGTTCGTTTTGTCG
GAACTCGCTCCTTCAAACGAACCACTTCCCCCACTTGTGACCGCGGTCGC
TTCGAGACGCGCGACAAGGCGTACGGCAGAGCGCTTGAGCAGAATCATCT
GTTACCGGAACTCATCTGGTTTTTTTCCGACAACTTCTGCTTTGACGCAC
TCAGCGCTCAACACACCTTGAATGCATTACGCCATATTTGTCAAAACTTT
CGCGCTCAGAAACGGTTTTTTTTCTACTCTTCTTCCTTGCTTGTCATATA
TGAAGGAGCGAAGAGCGCTCAACATTATCCGCGTGTGGACGTGCGAATGA
TTGACTTTTCTCATACTGTCCATTCGAACGGCGCTCCAGACATTGGATAT
CTTCACGGTCTTGAGTACATGCTTCATCTCTTGTCCGAAGCCCTGCGTTT
TCAAGCGCGCCCACACTCTGTCGAATCACACCCGTAA
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Coding sequence (CDS) from alignment at tig00000017_pilon:717015..717851-

>Gchil869.t1 ID=Gchil869.t1|Name=Gchil869.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=837bp|location=Sequence derived from alignment at tig00000017_pilon:717015..717851- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGCGCCGCCGGGGAGCCACTACGCCATACAGGTTGCCGGCCACCA
GCTCATCAGACAGTCGCCCACGCCCGGTCGCATCCTCAAACCGTGGTCGC
CCAAGGAACATGCCTTTTACCGCACCATCCACGCGCCCCACTTCCCGCCT
CACCTGCATTGGCTGCGCGCCGTCACCCCCATGTTCCACGGCGTGCATTG
CACCCCGTCCACCACCTCCACTACCGCCGCCCGCTGGCTGCAACTCGAGG
ACCTCAACTCCCCCTTCGTCAAGCCCTGCGTCATGGACGTCAAAATTGGC
TTTCGTCACTACGACGATGATGCGTCGCAACGCAAACGTGTCTCACAAAT
TCTCTCCGCAAATGCCACCACAACCGCCACCTGTGCCGTTCGTTTTGTCG
GAACTCGCTCCTTCAAACGAACCACTTCCCCCACTTGTGACCGCGGTCGC
TTCGAGACGCGCGACAAGGCGTACGGCAGAGCGCTTGAGCAGAATCATCT
GTTACCGGAACTCATCTGGTTTTTTTCCGACAACTTCTGCTTTGACGCAC
TCAGCGCTCAACACACCTTGAATGCATTACGCCATATTTGTCAAAACTTT
CGCGCTCAGAAACGGTTTTTTTTCTACTCTTCTTCCTTGCTTGTCATATA
TGAAGGAGCGAAGAGCGCTCAACATTATCCGCGTGTGGACGTGCGAATGA
TTGACTTTTCTCATACTGTCCATTCGAACGGCGCTCCAGACATTGGATAT
CTTCACGGTCTTGAGTACATGCTTCATCTCTTGTCCGAAGCCCTGCGTTT
TCAAGCGCGCCCACACTCTGTCGAATCACACCCGTAA
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