Gchil8686.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8686.t1
Unique NameGchil8686.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length184
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:1242024..1242575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42099.EPrPV00000020511
PFAMsGlyco_tran_28_C
Max annot lvl121069|Pythiales
Evalue1.84e-22
EggNOG OGsCOG5017@1|root,KOG3349@2759|Eukaryota,1MH7W@121069|Pythiales
DescriptionUDP-N-acetylglucosamine transferase subunit. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8686Gchil8686Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 1242024..1242575 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8686.t1.stop1Gchil8686.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 1242024..1242026 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8686.t1.CDS1Gchil8686.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 1242024..1242575 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8686.t1.exon1Gchil8686.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 1242024..1242575 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8686.t1.start1Gchil8686.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 1242573..1242575 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8686.t1Gchil8686.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 1242024..1242575 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8686.t1 ID=Gchil8686.t1|Name=Gchil8686.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=184bp
MAVDGAGITLLVTVGSTQFPALTDFIALPSTLAKLHELGISHVTLQHGSY
TPTLPAPGERPPALQPLRYHPQLCNLLRKADVVVSHAGAGTVLEAVDARR
PLVVVVNDALMHNHQTELAEAMQRCGCCVVVSANCMAQRLIPAVRQVLSN
RNAERSVPPPHVGGVFANVVAEELALARCGHQT*
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spliced messenger RNA

>Gchil8686.t1 ID=Gchil8686.t1|Name=Gchil8686.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=552bp|location=Sequence derived from alignment at tig00000088_pilon:1242024..1242575- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGTCGATGGGGCAGGAATAACACTGTTAGTGACGGTAGGGTCAAC
ACAATTTCCCGCTTTAACCGATTTCATAGCGCTGCCGTCGACGCTCGCCA
AGCTGCATGAACTAGGAATCTCGCACGTGACGCTGCAGCATGGCAGCTAC
ACGCCGACCTTGCCTGCGCCAGGAGAAAGGCCGCCGGCATTACAGCCCTT
GCGATATCATCCGCAGCTTTGCAATCTGTTGCGTAAGGCGGACGTAGTCG
TGTCTCACGCTGGCGCCGGCACGGTGTTAGAAGCCGTAGATGCGAGGCGA
CCATTGGTGGTGGTGGTGAACGACGCGTTAATGCACAATCACCAGACTGA
GCTCGCGGAAGCTATGCAACGCTGCGGATGCTGCGTCGTTGTCAGCGCCA
ATTGTATGGCGCAGCGACTCATTCCGGCCGTTCGGCAGGTTCTCAGCAAC
CGCAATGCGGAAAGAAGCGTCCCACCGCCGCACGTAGGCGGCGTGTTTGC
TAACGTAGTGGCAGAGGAGCTAGCGCTGGCGCGCTGTGGCCATCAAACAT
AG
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protein sequence of Gchil8686.t1

>Gchil8686.t1 ID=Gchil8686.t1|Name=Gchil8686.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=184bp
MAVDGAGITLLVTVGSTQFPALTDFIALPSTLAKLHELGISHVTLQHGSY
TPTLPAPGERPPALQPLRYHPQLCNLLRKADVVVSHAGAGTVLEAVDARR
PLVVVVNDALMHNHQTELAEAMQRCGCCVVVSANCMAQRLIPAVRQVLSN
RNAERSVPPPHVGGVFANVVAEELALARCGHQT*
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mRNA from alignment at tig00000088_pilon:1242024..1242575-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8686.t1 ID=Gchil8686.t1|Name=Gchil8686.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=552bp|location=Sequence derived from alignment at tig00000088_pilon:1242024..1242575- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGTCGATGGGGCAGGAATAACACTGTTAGTGACGGTAGGGTCAAC
ACAATTTCCCGCTTTAACCGATTTCATAGCGCTGCCGTCGACGCTCGCCA
AGCTGCATGAACTAGGAATCTCGCACGTGACGCTGCAGCATGGCAGCTAC
ACGCCGACCTTGCCTGCGCCAGGAGAAAGGCCGCCGGCATTACAGCCCTT
GCGATATCATCCGCAGCTTTGCAATCTGTTGCGTAAGGCGGACGTAGTCG
TGTCTCACGCTGGCGCCGGCACGGTGTTAGAAGCCGTAGATGCGAGGCGA
CCATTGGTGGTGGTGGTGAACGACGCGTTAATGCACAATCACCAGACTGA
GCTCGCGGAAGCTATGCAACGCTGCGGATGCTGCGTCGTTGTCAGCGCCA
ATTGTATGGCGCAGCGACTCATTCCGGCCGTTCGGCAGGTTCTCAGCAAC
CGCAATGCGGAAAGAAGCGTCCCACCGCCGCACGTAGGCGGCGTGTTTGC
TAACGTAGTGGCAGAGGAGCTAGCGCTGGCGCGCTGTGGCCATCAAACAT
AG
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Coding sequence (CDS) from alignment at tig00000088_pilon:1242024..1242575-

>Gchil8686.t1 ID=Gchil8686.t1|Name=Gchil8686.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=552bp|location=Sequence derived from alignment at tig00000088_pilon:1242024..1242575- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGTCGATGGGGCAGGAATAACACTGTTAGTGACGGTAGGGTCAAC
ACAATTTCCCGCTTTAACCGATTTCATAGCGCTGCCGTCGACGCTCGCCA
AGCTGCATGAACTAGGAATCTCGCACGTGACGCTGCAGCATGGCAGCTAC
ACGCCGACCTTGCCTGCGCCAGGAGAAAGGCCGCCGGCATTACAGCCCTT
GCGATATCATCCGCAGCTTTGCAATCTGTTGCGTAAGGCGGACGTAGTCG
TGTCTCACGCTGGCGCCGGCACGGTGTTAGAAGCCGTAGATGCGAGGCGA
CCATTGGTGGTGGTGGTGAACGACGCGTTAATGCACAATCACCAGACTGA
GCTCGCGGAAGCTATGCAACGCTGCGGATGCTGCGTCGTTGTCAGCGCCA
ATTGTATGGCGCAGCGACTCATTCCGGCCGTTCGGCAGGTTCTCAGCAAC
CGCAATGCGGAAAGAAGCGTCCCACCGCCGCACGTAGGCGGCGTGTTTGC
TAACGTAGTGGCAGAGGAGCTAGCGCTGGCGCGCTGTGGCCATCAAACAT
AG
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