Gchil8685.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8685.t1
Unique Name	Gchil8685.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	431

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:1240085..1241377 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	555778.Hneap_2252
PFAMs	2-Hacid_dh,2-Hacid_dh_C
Max annot lvl	135613\|Chromatiales
KEGG rclass	RC00044
KEGG ko	ko:K03778,ko:K18916
KEGG Reaction	R00704
KEGG Pathway	ko00620,ko01120,map00620,map01120
Evalue	8.59e-86
EggNOG OGs	COG1052@1\|root,COG1052@2\|Bacteria,1MVSS@1224\|Proteobacteria,1RMWR@1236\|Gammaproteobacteria,1WX6C@135613\|Chromatiales
EC	1.1.1.28,1.20.1.1
Description	D-isomer specific 2-hydroxyacid dehydrogenase
COG category	CH
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8685	Gchil8685	Gracilaria chilensis NLEC103_M9 male	gene	tig00000088_pilon 1240085..1241377 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8685.t1.start1	Gchil8685.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000088_pilon 1240085..1240087 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8685.t1.CDS1	Gchil8685.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000088_pilon 1240085..1241377 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8685.t1.exon1	Gchil8685.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000088_pilon 1240085..1241377 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8685.t1.stop1	Gchil8685.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000088_pilon 1241375..1241377 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8685.t1	Gchil8685.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000088_pilon 1240085..1241377 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000088_pilon:1240085..1241377+
coding sequence from alignment at tig00000088_pilon:1240085..1241377+

mRNA sequence

>Gchil8685.t1 ID=Gchil8685.t1|Name=Gchil8685.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=431bp
MDDTPVKHVQIPPLADRQPSNPFFQPPQPTHLDPSAVGAAHISLSQYEQT
LFQLQSSYFGSDATILGAQTQISPQIPAQIPIPQKQRPLRFMLFSALPYE
IEAFQSEIKLAGASGFIEMIPIQSALEDATASLALGAQVVCLFATDRVHK
NMLLALKACGVEVLAFRYSGVRAFLDEFAFEVGIRIARPPAHSPTSVAEY
TISLLMTLNRRIHIAHNRVRDGNFRLHGLMGFELSGKTVGIIGTGQVGRR
VAQILSGFGCRILAFDLIESKEVLANGGRYVSLKKLLESSHILSLHAPLM
AATRHMISAKALESCKRGVLIVNTARGALVDISAVIDGLRSGQVGGLAMD
VYEGETSMFFRDQTGDVVDMNLQVLKSMPNVLLTGHQSALTREAITSVAR
NLVRCLIQFRMGVEMDFEVKPEVDPPQGLT*

spliced messenger RNA

>Gchil8685.t1 ID=Gchil8685.t1|Name=Gchil8685.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1293bp|location=Sequence derived from alignment at tig00000088_pilon:1240085..1241377+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGACACCCCCGTCAAACACGTACAAATTCCGCCTTTGGCCGACCG
ACAGCCTTCCAACCCCTTTTTTCAACCGCCGCAACCCACTCATCTTGACC
CCTCCGCCGTTGGCGCCGCGCACATATCTCTTTCACAGTATGAGCAAACT
CTGTTTCAACTTCAGTCTTCGTACTTCGGAAGCGACGCCACAATACTCGG
CGCTCAGACTCAAATATCTCCGCAAATTCCCGCCCAAATCCCCATACCAC
AAAAACAGCGACCACTTAGGTTCATGCTCTTCTCTGCACTTCCGTACGAA
ATTGAAGCGTTCCAGTCGGAGATCAAATTAGCCGGTGCTTCAGGCTTCAT
CGAGATGATCCCCATCCAAAGTGCGCTGGAGGACGCCACCGCCTCGCTAG
CACTGGGCGCACAGGTGGTGTGTCTGTTTGCCACTGATAGAGTGCACAAG
AACATGTTACTTGCGCTCAAGGCCTGTGGCGTTGAAGTTTTGGCGTTTCG
TTACTCCGGAGTGAGAGCATTTCTTGATGAATTCGCTTTTGAGGTCGGCA
TTCGAATAGCTAGACCACCGGCACATTCCCCGACGAGCGTTGCAGAGTAC
ACCATATCGCTGCTCATGACACTCAATCGAAGGATTCACATTGCGCACAA
CCGTGTCCGCGACGGCAACTTCCGTCTGCACGGACTGATGGGTTTCGAGC
TCTCAGGGAAGACCGTGGGTATTATAGGCACGGGCCAAGTTGGTCGCCGC
GTTGCGCAAATTCTCAGCGGCTTTGGTTGTCGGATTTTGGCGTTTGACTT
GATTGAGTCGAAAGAAGTGTTGGCGAATGGAGGTCGATATGTGTCGCTGA
AGAAGCTCTTGGAAAGCTCGCATATTCTTTCATTGCATGCTCCGCTTATG
GCCGCAACGCGACACATGATCAGTGCGAAAGCGCTCGAATCTTGTAAGAG
GGGCGTGCTAATTGTGAACACAGCCCGTGGCGCTCTAGTTGACATTTCTG
CCGTTATTGATGGGTTGAGAAGTGGTCAAGTAGGAGGTCTCGCCATGGAT
GTTTACGAGGGAGAGACTTCCATGTTTTTCAGGGATCAAACCGGTGACGT
TGTTGACATGAATCTCCAGGTGTTAAAGTCTATGCCCAATGTGCTTTTGA
CGGGTCATCAGTCTGCGCTAACCAGAGAGGCTATCACTTCAGTGGCTAGG
AATTTGGTGAGATGTCTGATACAGTTTAGGATGGGAGTGGAAATGGACTT
TGAAGTAAAGCCGGAGGTTGATCCTCCCCAGGGGCTTACTTGA

protein sequence of Gchil8685.t1

>Gchil8685.t1 ID=Gchil8685.t1|Name=Gchil8685.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=431bp
MDDTPVKHVQIPPLADRQPSNPFFQPPQPTHLDPSAVGAAHISLSQYEQT
LFQLQSSYFGSDATILGAQTQISPQIPAQIPIPQKQRPLRFMLFSALPYE
IEAFQSEIKLAGASGFIEMIPIQSALEDATASLALGAQVVCLFATDRVHK
NMLLALKACGVEVLAFRYSGVRAFLDEFAFEVGIRIARPPAHSPTSVAEY
TISLLMTLNRRIHIAHNRVRDGNFRLHGLMGFELSGKTVGIIGTGQVGRR
VAQILSGFGCRILAFDLIESKEVLANGGRYVSLKKLLESSHILSLHAPLM
AATRHMISAKALESCKRGVLIVNTARGALVDISAVIDGLRSGQVGGLAMD
VYEGETSMFFRDQTGDVVDMNLQVLKSMPNVLLTGHQSALTREAITSVAR
NLVRCLIQFRMGVEMDFEVKPEVDPPQGLT*

mRNA from alignment at tig00000088_pilon:1240085..1241377+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8685.t1 ID=Gchil8685.t1|Name=Gchil8685.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1293bp|location=Sequence derived from alignment at tig00000088_pilon:1240085..1241377+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATGACACCCCCGTCAAACACGTACAAATTCCGCCTTTGGCCGACCG
ACAGCCTTCCAACCCCTTTTTTCAACCGCCGCAACCCACTCATCTTGACC
CCTCCGCCGTTGGCGCCGCGCACATATCTCTTTCACAGTATGAGCAAACT
CTGTTTCAACTTCAGTCTTCGTACTTCGGAAGCGACGCCACAATACTCGG
CGCTCAGACTCAAATATCTCCGCAAATTCCCGCCCAAATCCCCATACCAC
AAAAACAGCGACCACTTAGGTTCATGCTCTTCTCTGCACTTCCGTACGAA
ATTGAAGCGTTCCAGTCGGAGATCAAATTAGCCGGTGCTTCAGGCTTCAT
CGAGATGATCCCCATCCAAAGTGCGCTGGAGGACGCCACCGCCTCGCTAG
CACTGGGCGCACAGGTGGTGTGTCTGTTTGCCACTGATAGAGTGCACAAG
AACATGTTACTTGCGCTCAAGGCCTGTGGCGTTGAAGTTTTGGCGTTTCG
TTACTCCGGAGTGAGAGCATTTCTTGATGAATTCGCTTTTGAGGTCGGCA
TTCGAATAGCTAGACCACCGGCACATTCCCCGACGAGCGTTGCAGAGTAC
ACCATATCGCTGCTCATGACACTCAATCGAAGGATTCACATTGCGCACAA
CCGTGTCCGCGACGGCAACTTCCGTCTGCACGGACTGATGGGTTTCGAGC
TCTCAGGGAAGACCGTGGGTATTATAGGCACGGGCCAAGTTGGTCGCCGC
GTTGCGCAAATTCTCAGCGGCTTTGGTTGTCGGATTTTGGCGTTTGACTT
GATTGAGTCGAAAGAAGTGTTGGCGAATGGAGGTCGATATGTGTCGCTGA
AGAAGCTCTTGGAAAGCTCGCATATTCTTTCATTGCATGCTCCGCTTATG
GCCGCAACGCGACACATGATCAGTGCGAAAGCGCTCGAATCTTGTAAGAG
GGGCGTGCTAATTGTGAACACAGCCCGTGGCGCTCTAGTTGACATTTCTG
CCGTTATTGATGGGTTGAGAAGTGGTCAAGTAGGAGGTCTCGCCATGGAT
GTTTACGAGGGAGAGACTTCCATGTTTTTCAGGGATCAAACCGGTGACGT
TGTTGACATGAATCTCCAGGTGTTAAAGTCTATGCCCAATGTGCTTTTGA
CGGGTCATCAGTCTGCGCTAACCAGAGAGGCTATCACTTCAGTGGCTAGG
AATTTGGTGAGATGTCTGATACAGTTTAGGATGGGAGTGGAAATGGACTT
TGAAGTAAAGCCGGAGGTTGATCCTCCCCAGGGGCTTACTTGA

Coding sequence (CDS) from alignment at tig00000088_pilon:1240085..1241377+

>Gchil8685.t1 ID=Gchil8685.t1|Name=Gchil8685.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1293bp|location=Sequence derived from alignment at tig00000088_pilon:1240085..1241377+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATGACACCCCCGTCAAACACGTACAAATTCCGCCTTTGGCCGACCG
ACAGCCTTCCAACCCCTTTTTTCAACCGCCGCAACCCACTCATCTTGACC
CCTCCGCCGTTGGCGCCGCGCACATATCTCTTTCACAGTATGAGCAAACT
CTGTTTCAACTTCAGTCTTCGTACTTCGGAAGCGACGCCACAATACTCGG
CGCTCAGACTCAAATATCTCCGCAAATTCCCGCCCAAATCCCCATACCAC
AAAAACAGCGACCACTTAGGTTCATGCTCTTCTCTGCACTTCCGTACGAA
ATTGAAGCGTTCCAGTCGGAGATCAAATTAGCCGGTGCTTCAGGCTTCAT
CGAGATGATCCCCATCCAAAGTGCGCTGGAGGACGCCACCGCCTCGCTAG
CACTGGGCGCACAGGTGGTGTGTCTGTTTGCCACTGATAGAGTGCACAAG
AACATGTTACTTGCGCTCAAGGCCTGTGGCGTTGAAGTTTTGGCGTTTCG
TTACTCCGGAGTGAGAGCATTTCTTGATGAATTCGCTTTTGAGGTCGGCA
TTCGAATAGCTAGACCACCGGCACATTCCCCGACGAGCGTTGCAGAGTAC
ACCATATCGCTGCTCATGACACTCAATCGAAGGATTCACATTGCGCACAA
CCGTGTCCGCGACGGCAACTTCCGTCTGCACGGACTGATGGGTTTCGAGC
TCTCAGGGAAGACCGTGGGTATTATAGGCACGGGCCAAGTTGGTCGCCGC
GTTGCGCAAATTCTCAGCGGCTTTGGTTGTCGGATTTTGGCGTTTGACTT
GATTGAGTCGAAAGAAGTGTTGGCGAATGGAGGTCGATATGTGTCGCTGA
AGAAGCTCTTGGAAAGCTCGCATATTCTTTCATTGCATGCTCCGCTTATG
GCCGCAACGCGACACATGATCAGTGCGAAAGCGCTCGAATCTTGTAAGAG
GGGCGTGCTAATTGTGAACACAGCCCGTGGCGCTCTAGTTGACATTTCTG
CCGTTATTGATGGGTTGAGAAGTGGTCAAGTAGGAGGTCTCGCCATGGAT
GTTTACGAGGGAGAGACTTCCATGTTTTTCAGGGATCAAACCGGTGACGT
TGTTGACATGAATCTCCAGGTGTTAAAGTCTATGCCCAATGTGCTTTTGA
CGGGTCATCAGTCTGCGCTAACCAGAGAGGCTATCACTTCAGTGGCTAGG
AATTTGGTGAGATGTCTGATACAGTTTAGGATGGGAGTGGAAATGGACTT
TGAAGTAAAGCCGGAGGTTGATCCTCCCCAGGGGCTTACTTGA