Gchil8681.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8681.t1
Unique Name	Gchil8681.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	529

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:1230852..1232438 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4155.Migut.G00181.1.p
PFAMs	AMPK1_CBM,CBS
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K07200
KEGG Pathway	ko04068,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,map04068,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410
GOs	GO:0000003,GO:0000266,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006833,GO:0006950,GO:0006996,GO:0007005,GO:0007031,GO:0007154,GO:0008047,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009856,GO:0009859,GO:0009875,GO:0009893,GO:0009987,GO:0009991,GO:0010562,GO:0010604,GO:0016043,GO:0016301,GO:0016310,GO:0016559,GO:0016740,GO:0016772,GO:0016773,GO:0019207,GO:0019209,GO:0019220,GO:0019222,GO:0019538,GO:0019887,GO:0022414,GO:0030234,GO:0030295,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031667,GO:0031668,GO:0031669,GO:0032147,GO:0032268,GO:0032270,GO:0032501,GO:0033554,GO:0033674,GO:0036211,GO:0042044,GO:0042149,GO:0042325,GO:0042327,GO:0042594,GO:0043085,GO:0043170,GO:0043412,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044706,GO:0045859,GO:0045860,GO:0045937,GO:0046777,GO:0048285,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051704,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0071496,GO:0071704,GO:0071840,GO:0080090,GO:0098772,GO:0140096,GO:1901564,GO:2000377
Evalue	0.000637
EggNOG OGs	COG0517@1\|root,KOG1616@1\|root,KOG1616@2759\|Eukaryota,KOG1764@2759\|Eukaryota,37IKE@33090\|Viridiplantae,3GC4H@35493\|Streptophyta,44G2M@71274\|asterids
Description	Glycogen recognition site of AMP-activated protein kinase
COG category	CG
BRITE	ko00000,ko00001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8681	Gchil8681	Gracilaria chilensis NLEC103_M9 male	gene	tig00000088_pilon 1230852..1232438 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8681.t1.start1	Gchil8681.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000088_pilon 1230852..1230854 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8681.t1.CDS1	Gchil8681.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000088_pilon 1230852..1232438 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8681.t1.exon1	Gchil8681.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000088_pilon 1230852..1232438 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8681.t1.stop1	Gchil8681.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000088_pilon 1232436..1232438 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8681.t1	Gchil8681.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000088_pilon 1230852..1232438 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000088_pilon:1230852..1232438+
coding sequence from alignment at tig00000088_pilon:1230852..1232438+

mRNA sequence

>Gchil8681.t1 ID=Gchil8681.t1|Name=Gchil8681.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=529bp
MLGRRAAGRRNKLFRDRGEAQIPLSPPAAPDRFHKAIPFAQPTLIDSNVP
TTFLWPDPRHQHASVVLVASFDAFLHHRMRPTHSQPRKFTITLRVPPGSH
TYKFLVDGVWCTCSALHNQHPIETKDDGVRHHRLVVTAAERSCRNGNPQM
VPSRGHESVNSAAHSTAVFRSASASAVPPIQERADPTLPANAFQPQTSSV
SHQDTGRHKVEVAPRGTSFTSPPPIGGITHMKSITRKSLLHRVGSGWLRR
FSGRMDADGEFGCSFSMSQTQFFARDRSGSGLFRGSRDRVSLFPSASEPS
VGRCPTDDKENSFSANRLNGFGNSNDRGHSRRQTFRGSNRGTAVKISRPT
KVDEPKDMDEVNRQADNWRQMARHLQDDLCDPTGARELFTKAIQHREKHG
LWCTSQNAQVHVDLARNLSKGDRMKDAELHLRLALRIYNEIDAGKEHIAD
LMLYVGVVVDRQKRRAEAEELYRKALNMYKEHDINGNNVEIAVKNLSLNL
RKQNREHEIEAVRVEYGAIKLAPVGIMV*

spliced messenger RNA

>Gchil8681.t1 ID=Gchil8681.t1|Name=Gchil8681.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1587bp|location=Sequence derived from alignment at tig00000088_pilon:1230852..1232438+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGGCCGCCGGGCGGCCGGACGCCGTAACAAGCTTTTTCGCGATCG
TGGTGAGGCACAGATTCCGCTTTCGCCTCCCGCTGCACCGGATAGGTTCC
ACAAGGCGATTCCGTTCGCACAGCCTACACTGATCGATTCCAATGTGCCG
ACCACTTTTTTATGGCCTGATCCCAGGCACCAGCATGCGAGTGTTGTCTT
GGTGGCATCATTCGACGCTTTTCTTCATCACCGAATGAGACCAACCCATT
CCCAACCGCGAAAATTCACTATCACTTTGCGCGTTCCCCCCGGGTCGCAT
ACATACAAGTTTTTGGTGGACGGTGTGTGGTGTACATGCTCCGCTTTGCA
CAATCAGCACCCAATCGAAACAAAGGATGACGGAGTTAGACATCATCGTC
TTGTCGTCACAGCTGCAGAGCGCTCTTGTAGGAACGGCAACCCGCAAATG
GTCCCTTCTCGTGGTCACGAAAGCGTCAATAGCGCTGCTCACTCCACTGC
TGTGTTTCGTTCAGCTTCTGCTTCGGCCGTGCCGCCAATTCAAGAGCGAG
CGGACCCGACGCTACCGGCCAATGCATTTCAGCCACAAACATCGTCTGTG
TCTCATCAAGACACTGGTCGTCACAAAGTAGAAGTTGCCCCAAGAGGCAC
TTCGTTCACTTCCCCTCCTCCAATTGGAGGGATAACTCACATGAAGTCGA
TTACTCGTAAGTCATTGCTCCACAGAGTTGGGTCGGGATGGCTGAGGCGC
TTCTCGGGGCGGATGGACGCGGACGGTGAGTTTGGCTGTTCTTTTTCGAT
GAGCCAAACGCAATTCTTTGCTCGCGATCGTTCGGGTAGCGGCCTATTTC
GTGGAAGTCGCGATCGCGTATCTTTGTTTCCATCTGCGAGTGAACCGAGT
GTGGGTCGATGTCCGACGGACGACAAAGAGAACTCTTTTTCTGCTAATCG
CCTCAACGGGTTCGGCAATTCCAACGATAGAGGTCACTCAAGACGTCAGA
CTTTTCGAGGAAGCAATAGAGGCACAGCTGTGAAGATTTCAAGGCCCACC
AAAGTCGATGAACCTAAAGATATGGATGAGGTGAACCGACAGGCCGATAA
CTGGAGACAGATGGCGCGACATTTACAAGACGACCTATGCGACCCTACTG
GCGCGAGAGAGCTTTTCACCAAGGCTATTCAACATCGCGAGAAACATGGA
CTTTGGTGTACGAGCCAGAACGCCCAGGTACACGTGGATCTGGCGAGAAA
CCTAAGCAAAGGTGATCGCATGAAAGACGCAGAGCTTCATCTGCGTCTAG
CTCTCCGAATCTACAACGAAATTGATGCCGGGAAAGAACACATTGCCGAT
TTGATGCTATATGTGGGAGTAGTTGTTGACCGACAGAAGAGGCGAGCAGA
AGCTGAAGAGCTGTACAGGAAGGCGTTGAACATGTACAAGGAACATGACA
TAAATGGCAACAATGTGGAAATCGCCGTAAAGAATCTAAGTCTCAACTTG
CGCAAACAGAACCGCGAGCATGAAATCGAAGCAGTTCGAGTTGAGTACGG
TGCCATTAAGCTTGCACCAGTAGGAATCATGGTATAA

protein sequence of Gchil8681.t1

>Gchil8681.t1 ID=Gchil8681.t1|Name=Gchil8681.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=529bp
MLGRRAAGRRNKLFRDRGEAQIPLSPPAAPDRFHKAIPFAQPTLIDSNVP
TTFLWPDPRHQHASVVLVASFDAFLHHRMRPTHSQPRKFTITLRVPPGSH
TYKFLVDGVWCTCSALHNQHPIETKDDGVRHHRLVVTAAERSCRNGNPQM
VPSRGHESVNSAAHSTAVFRSASASAVPPIQERADPTLPANAFQPQTSSV
SHQDTGRHKVEVAPRGTSFTSPPPIGGITHMKSITRKSLLHRVGSGWLRR
FSGRMDADGEFGCSFSMSQTQFFARDRSGSGLFRGSRDRVSLFPSASEPS
VGRCPTDDKENSFSANRLNGFGNSNDRGHSRRQTFRGSNRGTAVKISRPT
KVDEPKDMDEVNRQADNWRQMARHLQDDLCDPTGARELFTKAIQHREKHG
LWCTSQNAQVHVDLARNLSKGDRMKDAELHLRLALRIYNEIDAGKEHIAD
LMLYVGVVVDRQKRRAEAEELYRKALNMYKEHDINGNNVEIAVKNLSLNL
RKQNREHEIEAVRVEYGAIKLAPVGIMV*

mRNA from alignment at tig00000088_pilon:1230852..1232438+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8681.t1 ID=Gchil8681.t1|Name=Gchil8681.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1587bp|location=Sequence derived from alignment at tig00000088_pilon:1230852..1232438+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTGGGCCGCCGGGCGGCCGGACGCCGTAACAAGCTTTTTCGCGATCG
TGGTGAGGCACAGATTCCGCTTTCGCCTCCCGCTGCACCGGATAGGTTCC
ACAAGGCGATTCCGTTCGCACAGCCTACACTGATCGATTCCAATGTGCCG
ACCACTTTTTTATGGCCTGATCCCAGGCACCAGCATGCGAGTGTTGTCTT
GGTGGCATCATTCGACGCTTTTCTTCATCACCGAATGAGACCAACCCATT
CCCAACCGCGAAAATTCACTATCACTTTGCGCGTTCCCCCCGGGTCGCAT
ACATACAAGTTTTTGGTGGACGGTGTGTGGTGTACATGCTCCGCTTTGCA
CAATCAGCACCCAATCGAAACAAAGGATGACGGAGTTAGACATCATCGTC
TTGTCGTCACAGCTGCAGAGCGCTCTTGTAGGAACGGCAACCCGCAAATG
GTCCCTTCTCGTGGTCACGAAAGCGTCAATAGCGCTGCTCACTCCACTGC
TGTGTTTCGTTCAGCTTCTGCTTCGGCCGTGCCGCCAATTCAAGAGCGAG
CGGACCCGACGCTACCGGCCAATGCATTTCAGCCACAAACATCGTCTGTG
TCTCATCAAGACACTGGTCGTCACAAAGTAGAAGTTGCCCCAAGAGGCAC
TTCGTTCACTTCCCCTCCTCCAATTGGAGGGATAACTCACATGAAGTCGA
TTACTCGTAAGTCATTGCTCCACAGAGTTGGGTCGGGATGGCTGAGGCGC
TTCTCGGGGCGGATGGACGCGGACGGTGAGTTTGGCTGTTCTTTTTCGAT
GAGCCAAACGCAATTCTTTGCTCGCGATCGTTCGGGTAGCGGCCTATTTC
GTGGAAGTCGCGATCGCGTATCTTTGTTTCCATCTGCGAGTGAACCGAGT
GTGGGTCGATGTCCGACGGACGACAAAGAGAACTCTTTTTCTGCTAATCG
CCTCAACGGGTTCGGCAATTCCAACGATAGAGGTCACTCAAGACGTCAGA
CTTTTCGAGGAAGCAATAGAGGCACAGCTGTGAAGATTTCAAGGCCCACC
AAAGTCGATGAACCTAAAGATATGGATGAGGTGAACCGACAGGCCGATAA
CTGGAGACAGATGGCGCGACATTTACAAGACGACCTATGCGACCCTACTG
GCGCGAGAGAGCTTTTCACCAAGGCTATTCAACATCGCGAGAAACATGGA
CTTTGGTGTACGAGCCAGAACGCCCAGGTACACGTGGATCTGGCGAGAAA
CCTAAGCAAAGGTGATCGCATGAAAGACGCAGAGCTTCATCTGCGTCTAG
CTCTCCGAATCTACAACGAAATTGATGCCGGGAAAGAACACATTGCCGAT
TTGATGCTATATGTGGGAGTAGTTGTTGACCGACAGAAGAGGCGAGCAGA
AGCTGAAGAGCTGTACAGGAAGGCGTTGAACATGTACAAGGAACATGACA
TAAATGGCAACAATGTGGAAATCGCCGTAAAGAATCTAAGTCTCAACTTG
CGCAAACAGAACCGCGAGCATGAAATCGAAGCAGTTCGAGTTGAGTACGG
TGCCATTAAGCTTGCACCAGTAGGAATCATGGTATAA

Coding sequence (CDS) from alignment at tig00000088_pilon:1230852..1232438+

>Gchil8681.t1 ID=Gchil8681.t1|Name=Gchil8681.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1587bp|location=Sequence derived from alignment at tig00000088_pilon:1230852..1232438+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTGGGCCGCCGGGCGGCCGGACGCCGTAACAAGCTTTTTCGCGATCG
TGGTGAGGCACAGATTCCGCTTTCGCCTCCCGCTGCACCGGATAGGTTCC
ACAAGGCGATTCCGTTCGCACAGCCTACACTGATCGATTCCAATGTGCCG
ACCACTTTTTTATGGCCTGATCCCAGGCACCAGCATGCGAGTGTTGTCTT
GGTGGCATCATTCGACGCTTTTCTTCATCACCGAATGAGACCAACCCATT
CCCAACCGCGAAAATTCACTATCACTTTGCGCGTTCCCCCCGGGTCGCAT
ACATACAAGTTTTTGGTGGACGGTGTGTGGTGTACATGCTCCGCTTTGCA
CAATCAGCACCCAATCGAAACAAAGGATGACGGAGTTAGACATCATCGTC
TTGTCGTCACAGCTGCAGAGCGCTCTTGTAGGAACGGCAACCCGCAAATG
GTCCCTTCTCGTGGTCACGAAAGCGTCAATAGCGCTGCTCACTCCACTGC
TGTGTTTCGTTCAGCTTCTGCTTCGGCCGTGCCGCCAATTCAAGAGCGAG
CGGACCCGACGCTACCGGCCAATGCATTTCAGCCACAAACATCGTCTGTG
TCTCATCAAGACACTGGTCGTCACAAAGTAGAAGTTGCCCCAAGAGGCAC
TTCGTTCACTTCCCCTCCTCCAATTGGAGGGATAACTCACATGAAGTCGA
TTACTCGTAAGTCATTGCTCCACAGAGTTGGGTCGGGATGGCTGAGGCGC
TTCTCGGGGCGGATGGACGCGGACGGTGAGTTTGGCTGTTCTTTTTCGAT
GAGCCAAACGCAATTCTTTGCTCGCGATCGTTCGGGTAGCGGCCTATTTC
GTGGAAGTCGCGATCGCGTATCTTTGTTTCCATCTGCGAGTGAACCGAGT
GTGGGTCGATGTCCGACGGACGACAAAGAGAACTCTTTTTCTGCTAATCG
CCTCAACGGGTTCGGCAATTCCAACGATAGAGGTCACTCAAGACGTCAGA
CTTTTCGAGGAAGCAATAGAGGCACAGCTGTGAAGATTTCAAGGCCCACC
AAAGTCGATGAACCTAAAGATATGGATGAGGTGAACCGACAGGCCGATAA
CTGGAGACAGATGGCGCGACATTTACAAGACGACCTATGCGACCCTACTG
GCGCGAGAGAGCTTTTCACCAAGGCTATTCAACATCGCGAGAAACATGGA
CTTTGGTGTACGAGCCAGAACGCCCAGGTACACGTGGATCTGGCGAGAAA
CCTAAGCAAAGGTGATCGCATGAAAGACGCAGAGCTTCATCTGCGTCTAG
CTCTCCGAATCTACAACGAAATTGATGCCGGGAAAGAACACATTGCCGAT
TTGATGCTATATGTGGGAGTAGTTGTTGACCGACAGAAGAGGCGAGCAGA
AGCTGAAGAGCTGTACAGGAAGGCGTTGAACATGTACAAGGAACATGACA
TAAATGGCAACAATGTGGAAATCGCCGTAAAGAATCTAAGTCTCAACTTG
CGCAAACAGAACCGCGAGCATGAAATCGAAGCAGTTCGAGTTGAGTACGG
TGCCATTAAGCTTGCACCAGTAGGAATCATGGTATAA