Gchil868.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil868.t1
Unique Name	Gchil868.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	363

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000017_pilon	contig	tig00000017_pilon:713086..714174 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1116369.KB890024_gene3486
Preferred name	galM
PFAMs	Aldose_epim
Max annot lvl	28211\|Alphaproteobacteria
KEGG rclass	RC00563
KEGG ko	ko:K01785
KEGG Reaction	R01602,R10619
KEGG Pathway	ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130
KEGG Module	M00632
GOs	GO:0003674,GO:0003824,GO:0004034,GO:0005975,GO:0005996,GO:0006006,GO:0006012,GO:0008150,GO:0008152,GO:0009056,GO:0016052,GO:0016853,GO:0016854,GO:0016857,GO:0019318,GO:0019320,GO:0019388,GO:0033499,GO:0044238,GO:0044281,GO:0044282,GO:0046365,GO:0071704,GO:1901575
Evalue	3.08e-49
EggNOG OGs	COG2017@1\|root,COG2017@2\|Bacteria,1MVMN@1224\|Proteobacteria,2TTJ7@28211\|Alphaproteobacteria,43GTW@69277\|Phyllobacteriaceae
EC	5.1.3.3
Description	Converts alpha-aldose to the beta-anomer
COG category	G
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil868	Gchil868	Gracilaria chilensis NLEC103_M9 male	gene	tig00000017_pilon 713086..714174 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil868.t1.start1	Gchil868.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000017_pilon 713086..713088 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil868.t1.CDS1	Gchil868.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000017_pilon 713086..714174 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil868.t1.exon1	Gchil868.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000017_pilon 713086..714174 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil868.t1.stop1	Gchil868.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000017_pilon 714172..714174 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil868.t1	Gchil868.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000017_pilon 713086..714174 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000017_pilon:713086..714174+
coding sequence from alignment at tig00000017_pilon:713086..714174+

mRNA sequence

>Gchil868.t1 ID=Gchil868.t1|Name=Gchil868.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=363bp
MRHPDQYQIPPRTTHLEGRTRNGDYVKTIHLRSESGAEASILTRGARLLD
LRFSKGPNRLITYNDLSGVEHDCAFVNVVIGRIANRTRGGKLLRHPEIDS
QAHLELNDQGRHHIHGGSNSWDKRLFCVQRKTENMVELTMLSPDGDQGYP
GGLELTVRYELVGDVRLNVTLSTKNVGSEPTLCNLTLHPYFDLSGEGGVV
EGSVLSYRMKASRCEQYLVLDDDNVPNGVIASVQGTRFDFTKDRPIHDGS
IEMKGYDNFWIVRKSPENKDQGLQSMVTFLHPGQTPGKGVKMEILSDQHG
FQFYTANGFDGSGNEKFAKHGSIAVEPSDFIDAANHDNFPCIALGPSETK
TQCMSYELSILE*

spliced messenger RNA

>Gchil868.t1 ID=Gchil868.t1|Name=Gchil868.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1089bp|location=Sequence derived from alignment at tig00000017_pilon:713086..714174+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCATCCGGACCAATACCAAATTCCGCCTAGAACAACCCACCTTGA
AGGCCGAACGAGGAACGGAGACTATGTGAAGACTATCCACCTTCGCTCAG
AAAGTGGAGCTGAGGCCTCTATTCTAACAAGGGGTGCGCGTCTTTTAGAT
CTGCGCTTTTCAAAGGGTCCTAACCGCCTCATAACATACAACGATTTATC
TGGTGTTGAACATGACTGCGCTTTTGTCAATGTCGTGATTGGGCGAATCG
CCAATCGCACGCGAGGTGGAAAGCTGCTCCGACATCCCGAAATTGATTCC
CAGGCTCATCTAGAGTTAAATGACCAAGGACGCCATCACATTCATGGCGG
ATCCAACTCTTGGGATAAAAGGCTATTCTGTGTGCAAAGGAAAACTGAAA
ACATGGTTGAATTGACCATGTTGTCACCCGATGGGGACCAAGGATATCCA
GGGGGCCTTGAACTAACTGTTCGATATGAGCTTGTTGGTGACGTGCGTCT
TAATGTAACGCTGAGCACGAAAAACGTGGGTAGCGAGCCAACGCTTTGTA
ACTTAACGTTGCACCCTTACTTCGATCTCAGCGGAGAAGGTGGTGTGGTT
GAAGGTTCTGTACTTTCTTATCGCATGAAAGCCAGTCGTTGTGAACAATA
TCTCGTTCTTGATGACGATAACGTTCCAAATGGTGTCATCGCTTCAGTGC
AAGGTACGCGTTTTGACTTCACTAAAGATCGGCCAATACATGATGGATCA
ATAGAGATGAAGGGGTATGATAACTTCTGGATCGTGCGAAAAAGTCCAGA
AAACAAGGATCAAGGATTGCAGTCTATGGTCACTTTCCTTCATCCAGGGC
AAACCCCTGGTAAGGGAGTTAAGATGGAAATACTTAGCGACCAGCATGGA
TTTCAGTTTTACACAGCGAACGGTTTTGACGGATCCGGAAATGAGAAGTT
TGCCAAGCATGGAAGTATTGCGGTTGAACCTAGTGACTTCATTGATGCTG
CAAATCACGACAACTTTCCTTGTATAGCACTTGGGCCGAGTGAGACGAAA
ACGCAGTGCATGTCATACGAATTAAGCATATTGGAGTGA

protein sequence of Gchil868.t1

>Gchil868.t1 ID=Gchil868.t1|Name=Gchil868.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=363bp
MRHPDQYQIPPRTTHLEGRTRNGDYVKTIHLRSESGAEASILTRGARLLD
LRFSKGPNRLITYNDLSGVEHDCAFVNVVIGRIANRTRGGKLLRHPEIDS
QAHLELNDQGRHHIHGGSNSWDKRLFCVQRKTENMVELTMLSPDGDQGYP
GGLELTVRYELVGDVRLNVTLSTKNVGSEPTLCNLTLHPYFDLSGEGGVV
EGSVLSYRMKASRCEQYLVLDDDNVPNGVIASVQGTRFDFTKDRPIHDGS
IEMKGYDNFWIVRKSPENKDQGLQSMVTFLHPGQTPGKGVKMEILSDQHG
FQFYTANGFDGSGNEKFAKHGSIAVEPSDFIDAANHDNFPCIALGPSETK
TQCMSYELSILE*

mRNA from alignment at tig00000017_pilon:713086..714174+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil868.t1 ID=Gchil868.t1|Name=Gchil868.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1089bp|location=Sequence derived from alignment at tig00000017_pilon:713086..714174+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCATCCGGACCAATACCAAATTCCGCCTAGAACAACCCACCTTGA
AGGCCGAACGAGGAACGGAGACTATGTGAAGACTATCCACCTTCGCTCAG
AAAGTGGAGCTGAGGCCTCTATTCTAACAAGGGGTGCGCGTCTTTTAGAT
CTGCGCTTTTCAAAGGGTCCTAACCGCCTCATAACATACAACGATTTATC
TGGTGTTGAACATGACTGCGCTTTTGTCAATGTCGTGATTGGGCGAATCG
CCAATCGCACGCGAGGTGGAAAGCTGCTCCGACATCCCGAAATTGATTCC
CAGGCTCATCTAGAGTTAAATGACCAAGGACGCCATCACATTCATGGCGG
ATCCAACTCTTGGGATAAAAGGCTATTCTGTGTGCAAAGGAAAACTGAAA
ACATGGTTGAATTGACCATGTTGTCACCCGATGGGGACCAAGGATATCCA
GGGGGCCTTGAACTAACTGTTCGATATGAGCTTGTTGGTGACGTGCGTCT
TAATGTAACGCTGAGCACGAAAAACGTGGGTAGCGAGCCAACGCTTTGTA
ACTTAACGTTGCACCCTTACTTCGATCTCAGCGGAGAAGGTGGTGTGGTT
GAAGGTTCTGTACTTTCTTATCGCATGAAAGCCAGTCGTTGTGAACAATA
TCTCGTTCTTGATGACGATAACGTTCCAAATGGTGTCATCGCTTCAGTGC
AAGGTACGCGTTTTGACTTCACTAAAGATCGGCCAATACATGATGGATCA
ATAGAGATGAAGGGGTATGATAACTTCTGGATCGTGCGAAAAAGTCCAGA
AAACAAGGATCAAGGATTGCAGTCTATGGTCACTTTCCTTCATCCAGGGC
AAACCCCTGGTAAGGGAGTTAAGATGGAAATACTTAGCGACCAGCATGGA
TTTCAGTTTTACACAGCGAACGGTTTTGACGGATCCGGAAATGAGAAGTT
TGCCAAGCATGGAAGTATTGCGGTTGAACCTAGTGACTTCATTGATGCTG
CAAATCACGACAACTTTCCTTGTATAGCACTTGGGCCGAGTGAGACGAAA
ACGCAGTGCATGTCATACGAATTAAGCATATTGGAGTGA

Coding sequence (CDS) from alignment at tig00000017_pilon:713086..714174+

>Gchil868.t1 ID=Gchil868.t1|Name=Gchil868.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1089bp|location=Sequence derived from alignment at tig00000017_pilon:713086..714174+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCATCCGGACCAATACCAAATTCCGCCTAGAACAACCCACCTTGA
AGGCCGAACGAGGAACGGAGACTATGTGAAGACTATCCACCTTCGCTCAG
AAAGTGGAGCTGAGGCCTCTATTCTAACAAGGGGTGCGCGTCTTTTAGAT
CTGCGCTTTTCAAAGGGTCCTAACCGCCTCATAACATACAACGATTTATC
TGGTGTTGAACATGACTGCGCTTTTGTCAATGTCGTGATTGGGCGAATCG
CCAATCGCACGCGAGGTGGAAAGCTGCTCCGACATCCCGAAATTGATTCC
CAGGCTCATCTAGAGTTAAATGACCAAGGACGCCATCACATTCATGGCGG
ATCCAACTCTTGGGATAAAAGGCTATTCTGTGTGCAAAGGAAAACTGAAA
ACATGGTTGAATTGACCATGTTGTCACCCGATGGGGACCAAGGATATCCA
GGGGGCCTTGAACTAACTGTTCGATATGAGCTTGTTGGTGACGTGCGTCT
TAATGTAACGCTGAGCACGAAAAACGTGGGTAGCGAGCCAACGCTTTGTA
ACTTAACGTTGCACCCTTACTTCGATCTCAGCGGAGAAGGTGGTGTGGTT
GAAGGTTCTGTACTTTCTTATCGCATGAAAGCCAGTCGTTGTGAACAATA
TCTCGTTCTTGATGACGATAACGTTCCAAATGGTGTCATCGCTTCAGTGC
AAGGTACGCGTTTTGACTTCACTAAAGATCGGCCAATACATGATGGATCA
ATAGAGATGAAGGGGTATGATAACTTCTGGATCGTGCGAAAAAGTCCAGA
AAACAAGGATCAAGGATTGCAGTCTATGGTCACTTTCCTTCATCCAGGGC
AAACCCCTGGTAAGGGAGTTAAGATGGAAATACTTAGCGACCAGCATGGA
TTTCAGTTTTACACAGCGAACGGTTTTGACGGATCCGGAAATGAGAAGTT
TGCCAAGCATGGAAGTATTGCGGTTGAACCTAGTGACTTCATTGATGCTG
CAAATCACGACAACTTTCCTTGTATAGCACTTGGGCCGAGTGAGACGAAA
ACGCAGTGCATGTCATACGAATTAAGCATATTGGAGTGA