Gchil8675.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8675.t1
Unique NameGchil8675.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length614
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:1173870..1175822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LSR2
Preferred nameAMO1
PFAMsCu_amine_oxid,Cu_amine_oxidN2,Cu_amine_oxidN3
Max annot lvl2759|Eukaryota
KEGG rclassRC00062,RC00189,RC00676,RC01052
KEGG koko:K00276,ko:K13281
KEGG ReactionR02382,R02529,R02613,R03139,R04027,R04300,R06154,R06740
KEGG Pathwayko00260,ko00350,ko00360,ko00410,ko00950,ko00960,ko01100,ko01110,map00260,map00350,map00360,map00410,map00950,map00960,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006807,GO:0006873,GO:0006875,GO:0006878,GO:0008131,GO:0008150,GO:0008152,GO:0009056,GO:0009308,GO:0009310,GO:0009636,GO:0009987,GO:0016491,GO:0016638,GO:0016641,GO:0019725,GO:0030003,GO:0042221,GO:0042592,GO:0042763,GO:0042764,GO:0043167,GO:0043169,GO:0044424,GO:0044464,GO:0046872,GO:0046914,GO:0046916,GO:0048037,GO:0048038,GO:0048878,GO:0050801,GO:0050896,GO:0051716,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055082,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0071704,GO:0071941,GO:0097237,GO:0098754,GO:0098771,GO:1901564,GO:1901565,GO:1901575,GO:1990748
Evalue2.6e-247
EggNOG OGsCOG3733@1|root,KOG1186@2759|Eukaryota
EC1.4.3.21
Descriptiontryptamine:oxygen oxidoreductase (deaminating) activity
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8675Gchil8675Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 1173870..1175822 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8675.t1Gchil8675.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 1173870..1175822 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8675.t1.stop1Gchil8675.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 1173870..1173872 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8675.t1.CDS1Gchil8675.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 1173870..1175138 -
Gchil8675.t1.CDS2Gchil8675.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 1175250..1175822 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8675.t1.exon1Gchil8675.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 1173870..1175138 -
Gchil8675.t1.exon2Gchil8675.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 1175250..1175822 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8675.t1.intron1Gchil8675.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000088_pilon 1175139..1175249 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8675.t1.start1Gchil8675.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 1175820..1175822 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8675.t1 ID=Gchil8675.t1|Name=Gchil8675.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=614bp
MAPAAETSGHLLQEALQSKTLSPLSPEEIRKAARLSRDHLSDNVRLSAIT
LAETCVARAAVVIAIVPPDATAYKLHVDLVSSEIKDLPIARGAQPVLTPD
DCNLAGTIVKRDARVRDLISKRYGMYDIDSLVCDPWSVHIAGEYEPLHFR
KDGQPAGLVQTFLYKRDHPFDNHYAHPIDILPVVDLNLKTVTLRPLQVVQ
PDGPSFTVRDNNVDWEKWSFSVGFNYREGLVLHNIQFDNRSVVKRASLVE
MAVPYADAHPPFERKCAFDVGDYGLGYCANSLDLGCDCLGAIHYFDMILS
DSRGEPYVIKKAICIHEEDAGLLYKHVEYRTGHSESRRARRLVISFIATV
VNYEYLFYWYLHHDGSISHEIKLSGELSTNLLSEGENEPTAGVIVAPGVN
AQIHQHMFCARLEMAVDGARNSVEEVNLVAAEAGEHSTFGNAFRVESRSL
HTEQEAQRDAVAARTWRIFNPHKENYISGKKIAYKLVPYTFGSFQPPLLT
TEESAVSKRGWFAKRSLWVTPYEKDENYPAGEFPTQSAGGDGLPLWTAKN
RSIVDERIVIWHSFGVAHVPRTEDFPVMSCESTGFTLKPDCFLLGNPGID
LPPKVDGASVCCS*
back to top

spliced messenger RNA

>Gchil8675.t1 ID=Gchil8675.t1|Name=Gchil8675.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1842bp|location=Sequence derived from alignment at tig00000088_pilon:1173870..1175822- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCGGCAGCAGAAACTTCAGGACATCTTTTACAGGAAGCGCTTCA
GTCCAAAACCCTGAGCCCTCTCTCTCCCGAGGAAATTCGAAAAGCTGCTC
GTCTATCACGTGATCATTTATCTGACAACGTACGGCTTTCTGCCATAACA
CTTGCTGAGACATGTGTAGCACGGGCCGCGGTTGTGATTGCCATTGTTCC
GCCGGATGCTACAGCTTACAAGCTTCACGTGGATCTTGTTTCGTCTGAAA
TCAAAGATCTTCCCATCGCAAGGGGCGCCCAGCCGGTGCTCACCCCGGAT
GATTGCAATTTGGCTGGGACAATAGTAAAGCGCGACGCTCGCGTGCGAGA
TTTGATATCAAAAAGGTATGGAATGTACGACATTGACTCTTTGGTTTGCG
ATCCATGGAGCGTACATATTGCTGGGGAGTACGAACCACTGCATTTTCGA
AAGGACGGTCAGCCGGCAGGACTGGTTCAAACTTTTTTGTACAAACGGGA
CCACCCGTTTGACAATCATTACGCTCATCCTATTGACATACTTCCGGTTG
TAGACCTCAACCTAAAAACTGTGACGCTACGACCACTGCAAGTAGTGCAG
CCGGATGGGCCTAGCTTCACAGTCCGTGACAATAATGTAGACTGGGAAAA
ATGGAGCTTCTCCGTTGGGTTTAACTATCGCGAGGGACTTGTTCTTCATA
ACATCCAGTTCGACAATCGCTCTGTCGTCAAGCGAGCAAGTCTGGTAGAA
ATGGCGGTTCCATATGCAGATGCGCATCCTCCATTTGAGCGTAAGTGCGC
GTTTGACGTTGGCGACTACGGGTTGGGTTATTGTGCCAATAGTCTTGACC
TTGGATGTGATTGTCTAGGTGCTATTCACTACTTTGATATGATTCTGTCC
GACAGCAGAGGCGAGCCATATGTCATCAAAAAAGCAATATGTATTCACGA
AGAAGATGCGGGCCTTCTTTACAAACATGTCGAGTATCGCACCGGTCATT
CTGAAAGCAGACGCGCAAGGCGACTGGTTATCTCGTTCATTGCAACTGTA
GTGAATTATGAATACCTGTTCTATTGGTATCTTCATCATGATGGTTCTAT
ATCGCACGAGATCAAACTTTCGGGTGAGCTCTCAACAAATCTTCTCAGTG
AAGGAGAGAATGAACCTACGGCGGGAGTGATTGTGGCACCTGGGGTGAAT
GCACAGATTCACCAACACATGTTCTGTGCACGCTTGGAAATGGCAGTTGA
TGGAGCTCGTAATTCGGTGGAAGAAGTTAACTTGGTAGCCGCAGAGGCTG
GAGAGCACAGCACTTTTGGAAACGCGTTCCGAGTTGAAAGCAGGTCATTA
CACACGGAGCAAGAAGCTCAACGTGACGCGGTCGCAGCTCGTACTTGGCG
AATTTTTAACCCGCACAAAGAGAACTACATATCCGGGAAAAAGATTGCGT
ACAAACTTGTTCCCTACACTTTCGGCTCTTTCCAACCACCCCTTCTCACC
ACAGAAGAAAGCGCGGTGTCAAAACGTGGGTGGTTCGCGAAGAGATCACT
GTGGGTAACACCATATGAAAAAGATGAGAATTATCCAGCGGGAGAATTCC
CGACGCAGAGCGCTGGAGGCGATGGTCTACCACTGTGGACGGCCAAAAAT
CGCTCTATCGTGGACGAACGCATCGTGATATGGCACAGTTTTGGGGTTGC
GCATGTGCCAAGGACTGAGGATTTTCCAGTCATGTCGTGCGAGAGCACTG
GATTCACACTGAAACCGGACTGTTTCTTGCTTGGAAATCCAGGGATCGAT
CTGCCTCCTAAAGTTGATGGCGCAAGTGTGTGTTGTTCGTAG
back to top

protein sequence of Gchil8675.t1

>Gchil8675.t1 ID=Gchil8675.t1|Name=Gchil8675.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=614bp
MAPAAETSGHLLQEALQSKTLSPLSPEEIRKAARLSRDHLSDNVRLSAIT
LAETCVARAAVVIAIVPPDATAYKLHVDLVSSEIKDLPIARGAQPVLTPD
DCNLAGTIVKRDARVRDLISKRYGMYDIDSLVCDPWSVHIAGEYEPLHFR
KDGQPAGLVQTFLYKRDHPFDNHYAHPIDILPVVDLNLKTVTLRPLQVVQ
PDGPSFTVRDNNVDWEKWSFSVGFNYREGLVLHNIQFDNRSVVKRASLVE
MAVPYADAHPPFERKCAFDVGDYGLGYCANSLDLGCDCLGAIHYFDMILS
DSRGEPYVIKKAICIHEEDAGLLYKHVEYRTGHSESRRARRLVISFIATV
VNYEYLFYWYLHHDGSISHEIKLSGELSTNLLSEGENEPTAGVIVAPGVN
AQIHQHMFCARLEMAVDGARNSVEEVNLVAAEAGEHSTFGNAFRVESRSL
HTEQEAQRDAVAARTWRIFNPHKENYISGKKIAYKLVPYTFGSFQPPLLT
TEESAVSKRGWFAKRSLWVTPYEKDENYPAGEFPTQSAGGDGLPLWTAKN
RSIVDERIVIWHSFGVAHVPRTEDFPVMSCESTGFTLKPDCFLLGNPGID
LPPKVDGASVCCS*
back to top

mRNA from alignment at tig00000088_pilon:1173870..1175822-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8675.t1 ID=Gchil8675.t1|Name=Gchil8675.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1953bp|location=Sequence derived from alignment at tig00000088_pilon:1173870..1175822- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCCGGCAGCAGAAACTTCAGGACATCTTTTACAGGAAGCGCTTCA
GTCCAAAACCCTGAGCCCTCTCTCTCCCGAGGAAATTCGAAAAGCTGCTC
GTCTATCACGTGATCATTTATCTGACAACGTACGGCTTTCTGCCATAACA
CTTGCTGAGACATGTGTAGCACGGGCCGCGGTTGTGATTGCCATTGTTCC
GCCGGATGCTACAGCTTACAAGCTTCACGTGGATCTTGTTTCGTCTGAAA
TCAAAGATCTTCCCATCGCAAGGGGCGCCCAGCCGGTGCTCACCCCGGAT
GATTGCAATTTGGCTGGGACAATAGTAAAGCGCGACGCTCGCGTGCGAGA
TTTGATATCAAAAAGGTATGGAATGTACGACATTGACTCTTTGGTTTGCG
ATCCATGGAGCGTACATATTGCTGGGGAGTACGAACCACTGCATTTTCGA
AAGGACGGTCAGCCGGCAGGACTGGTTCAAACTTTTTTGTACAAACGGGA
CCACCCGTTTGACAATCATTACGCTCATCCTATTGACATACTTCCGGTTG
TAGACCTCAACCTAAAAACTGTGGTAACAGTTGAATGAGTGCAACGTAGT
CCCCCCTTTCTACCGAACGCGGCCGTTAACTATCATCCAGATCTTCTTCG
GGACAACGATTATCTGCCTTCCGAATTTCGCAAGACGCTACGACCACTGC
AAGTAGTGCAGCCGGATGGGCCTAGCTTCACAGTCCGTGACAATAATGTA
GACTGGGAAAAATGGAGCTTCTCCGTTGGGTTTAACTATCGCGAGGGACT
TGTTCTTCATAACATCCAGTTCGACAATCGCTCTGTCGTCAAGCGAGCAA
GTCTGGTAGAAATGGCGGTTCCATATGCAGATGCGCATCCTCCATTTGAG
CGTAAGTGCGCGTTTGACGTTGGCGACTACGGGTTGGGTTATTGTGCCAA
TAGTCTTGACCTTGGATGTGATTGTCTAGGTGCTATTCACTACTTTGATA
TGATTCTGTCCGACAGCAGAGGCGAGCCATATGTCATCAAAAAAGCAATA
TGTATTCACGAAGAAGATGCGGGCCTTCTTTACAAACATGTCGAGTATCG
CACCGGTCATTCTGAAAGCAGACGCGCAAGGCGACTGGTTATCTCGTTCA
TTGCAACTGTAGTGAATTATGAATACCTGTTCTATTGGTATCTTCATCAT
GATGGTTCTATATCGCACGAGATCAAACTTTCGGGTGAGCTCTCAACAAA
TCTTCTCAGTGAAGGAGAGAATGAACCTACGGCGGGAGTGATTGTGGCAC
CTGGGGTGAATGCACAGATTCACCAACACATGTTCTGTGCACGCTTGGAA
ATGGCAGTTGATGGAGCTCGTAATTCGGTGGAAGAAGTTAACTTGGTAGC
CGCAGAGGCTGGAGAGCACAGCACTTTTGGAAACGCGTTCCGAGTTGAAA
GCAGGTCATTACACACGGAGCAAGAAGCTCAACGTGACGCGGTCGCAGCT
CGTACTTGGCGAATTTTTAACCCGCACAAAGAGAACTACATATCCGGGAA
AAAGATTGCGTACAAACTTGTTCCCTACACTTTCGGCTCTTTCCAACCAC
CCCTTCTCACCACAGAAGAAAGCGCGGTGTCAAAACGTGGGTGGTTCGCG
AAGAGATCACTGTGGGTAACACCATATGAAAAAGATGAGAATTATCCAGC
GGGAGAATTCCCGACGCAGAGCGCTGGAGGCGATGGTCTACCACTGTGGA
CGGCCAAAAATCGCTCTATCGTGGACGAACGCATCGTGATATGGCACAGT
TTTGGGGTTGCGCATGTGCCAAGGACTGAGGATTTTCCAGTCATGTCGTG
CGAGAGCACTGGATTCACACTGAAACCGGACTGTTTCTTGCTTGGAAATC
CAGGGATCGATCTGCCTCCTAAAGTTGATGGCGCAAGTGTGTGTTGTTCG
TAG
back to top

Coding sequence (CDS) from alignment at tig00000088_pilon:1173870..1175822-

>Gchil8675.t1 ID=Gchil8675.t1|Name=Gchil8675.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1842bp|location=Sequence derived from alignment at tig00000088_pilon:1173870..1175822- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCCGGCAGCAGAAACTTCAGGACATCTTTTACAGGAAGCGCTTCA
GTCCAAAACCCTGAGCCCTCTCTCTCCCGAGGAAATTCGAAAAGCTGCTC
GTCTATCACGTGATCATTTATCTGACAACGTACGGCTTTCTGCCATAACA
CTTGCTGAGACATGTGTAGCACGGGCCGCGGTTGTGATTGCCATTGTTCC
GCCGGATGCTACAGCTTACAAGCTTCACGTGGATCTTGTTTCGTCTGAAA
TCAAAGATCTTCCCATCGCAAGGGGCGCCCAGCCGGTGCTCACCCCGGAT
GATTGCAATTTGGCTGGGACAATAGTAAAGCGCGACGCTCGCGTGCGAGA
TTTGATATCAAAAAGGTATGGAATGTACGACATTGACTCTTTGGTTTGCG
ATCCATGGAGCGTACATATTGCTGGGGAGTACGAACCACTGCATTTTCGA
AAGGACGGTCAGCCGGCAGGACTGGTTCAAACTTTTTTGTACAAACGGGA
CCACCCGTTTGACAATCATTACGCTCATCCTATTGACATACTTCCGGTTG
TAGACCTCAACCTAAAAACTGTGACGCTACGACCACTGCAAGTAGTGCAG
CCGGATGGGCCTAGCTTCACAGTCCGTGACAATAATGTAGACTGGGAAAA
ATGGAGCTTCTCCGTTGGGTTTAACTATCGCGAGGGACTTGTTCTTCATA
ACATCCAGTTCGACAATCGCTCTGTCGTCAAGCGAGCAAGTCTGGTAGAA
ATGGCGGTTCCATATGCAGATGCGCATCCTCCATTTGAGCGTAAGTGCGC
GTTTGACGTTGGCGACTACGGGTTGGGTTATTGTGCCAATAGTCTTGACC
TTGGATGTGATTGTCTAGGTGCTATTCACTACTTTGATATGATTCTGTCC
GACAGCAGAGGCGAGCCATATGTCATCAAAAAAGCAATATGTATTCACGA
AGAAGATGCGGGCCTTCTTTACAAACATGTCGAGTATCGCACCGGTCATT
CTGAAAGCAGACGCGCAAGGCGACTGGTTATCTCGTTCATTGCAACTGTA
GTGAATTATGAATACCTGTTCTATTGGTATCTTCATCATGATGGTTCTAT
ATCGCACGAGATCAAACTTTCGGGTGAGCTCTCAACAAATCTTCTCAGTG
AAGGAGAGAATGAACCTACGGCGGGAGTGATTGTGGCACCTGGGGTGAAT
GCACAGATTCACCAACACATGTTCTGTGCACGCTTGGAAATGGCAGTTGA
TGGAGCTCGTAATTCGGTGGAAGAAGTTAACTTGGTAGCCGCAGAGGCTG
GAGAGCACAGCACTTTTGGAAACGCGTTCCGAGTTGAAAGCAGGTCATTA
CACACGGAGCAAGAAGCTCAACGTGACGCGGTCGCAGCTCGTACTTGGCG
AATTTTTAACCCGCACAAAGAGAACTACATATCCGGGAAAAAGATTGCGT
ACAAACTTGTTCCCTACACTTTCGGCTCTTTCCAACCACCCCTTCTCACC
ACAGAAGAAAGCGCGGTGTCAAAACGTGGGTGGTTCGCGAAGAGATCACT
GTGGGTAACACCATATGAAAAAGATGAGAATTATCCAGCGGGAGAATTCC
CGACGCAGAGCGCTGGAGGCGATGGTCTACCACTGTGGACGGCCAAAAAT
CGCTCTATCGTGGACGAACGCATCGTGATATGGCACAGTTTTGGGGTTGC
GCATGTGCCAAGGACTGAGGATTTTCCAGTCATGTCGTGCGAGAGCACTG
GATTCACACTGAAACCGGACTGTTTCTTGCTTGGAAATCCAGGGATCGAT
CTGCCTCCTAAAGTTGATGGCGCAAGTGTGTGTTGTTCGTAG
back to top