Gchil8664.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8664.t1
Unique NameGchil8664.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length278
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:1097862..1098695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38833.XP_003058141.1
PFAMsECH_1
Max annot lvl3041|Chlorophyta
KEGG rclassRC01078
KEGG koko:K13238
KEGG ReactionR04756
KEGG Pathwayko00071,map00071
Evalue6.2e-64
EggNOG OGsCOG1024@1|root,KOG1683@2759|Eukaryota,37U6U@33090|Viridiplantae,34HNZ@3041|Chlorophyta
EC5.3.3.8
DescriptionBelongs to the enoyl-CoA hydratase isomerase family
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8664Gchil8664Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 1097862..1098695 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8664.t1.start1Gchil8664.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 1097862..1097864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8664.t1.CDS1Gchil8664.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 1097862..1098695 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8664.t1.exon1Gchil8664.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 1097862..1098695 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8664.t1.stop1Gchil8664.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 1098693..1098695 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8664.t1Gchil8664.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 1097862..1098695 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8664.t1 ID=Gchil8664.t1|Name=Gchil8664.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=278bp
MLPEPVSSSNYKFLTVSYPAETICHCQLSRPPVNALNTELWRELLSLLTS
LEKTFPKSTRVLIFSSAARGPIFSAGNDLTELHAPSTSKERFYTFWGLST
LFLARLYKSPLYTIAAIRGATPAGGCVLSLCCDYRVALENTRIGLNEVAI
GLTVPKYYALLLLNLCTVRSEAELLLSRGQMIDARKAKRLGLVDDVLAGN
SKQLISFALSTAENFSDERGASGRAGTKIEIRRQFADDWEGYANEEAQKG
WVRLCEPDVVKSLGSVLSKLKTHRARI*
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spliced messenger RNA

>Gchil8664.t1 ID=Gchil8664.t1|Name=Gchil8664.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=834bp|location=Sequence derived from alignment at tig00000088_pilon:1097862..1098695+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCCAGAACCAGTATCGTCATCGAACTATAAGTTTCTCACAGTGAG
CTACCCCGCAGAAACAATTTGTCACTGCCAACTTTCGCGACCTCCCGTAA
ATGCGCTCAACACCGAGTTATGGAGAGAGCTGCTGTCTCTGCTCACCTCT
CTTGAGAAGACGTTCCCCAAATCGACTAGGGTGTTAATCTTTTCTTCTGC
CGCTCGTGGACCTATCTTCTCCGCAGGCAACGATCTCACTGAACTGCACG
CGCCATCCACCTCTAAGGAACGCTTTTATACCTTTTGGGGACTATCTACG
CTCTTTCTGGCTCGCCTGTACAAGAGTCCTCTGTACACAATTGCTGCTAT
TCGCGGAGCCACCCCAGCAGGAGGATGTGTATTGTCTTTATGTTGCGATT
ATCGAGTCGCTTTAGAAAACACCAGAATAGGATTGAATGAGGTCGCCATT
GGTCTCACGGTTCCCAAATACTATGCGCTTTTGCTTTTGAATCTGTGCAC
TGTTCGATCGGAAGCAGAACTTTTGCTTTCAAGAGGCCAAATGATAGATG
CACGAAAAGCAAAGCGACTCGGTCTTGTTGACGATGTTCTTGCCGGAAAC
TCAAAACAGTTGATAAGTTTCGCACTGAGCACTGCAGAAAATTTTTCCGA
TGAACGCGGGGCATCCGGCCGAGCGGGTACGAAAATAGAGATACGAAGAC
AGTTTGCGGACGATTGGGAAGGTTATGCAAATGAAGAGGCGCAAAAGGGT
TGGGTAAGACTTTGTGAGCCCGATGTTGTGAAAAGTCTAGGTTCTGTCCT
TTCGAAATTGAAGACACATAGAGCTAGAATTTAA
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protein sequence of Gchil8664.t1

>Gchil8664.t1 ID=Gchil8664.t1|Name=Gchil8664.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=278bp
MLPEPVSSSNYKFLTVSYPAETICHCQLSRPPVNALNTELWRELLSLLTS
LEKTFPKSTRVLIFSSAARGPIFSAGNDLTELHAPSTSKERFYTFWGLST
LFLARLYKSPLYTIAAIRGATPAGGCVLSLCCDYRVALENTRIGLNEVAI
GLTVPKYYALLLLNLCTVRSEAELLLSRGQMIDARKAKRLGLVDDVLAGN
SKQLISFALSTAENFSDERGASGRAGTKIEIRRQFADDWEGYANEEAQKG
WVRLCEPDVVKSLGSVLSKLKTHRARI*
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mRNA from alignment at tig00000088_pilon:1097862..1098695+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8664.t1 ID=Gchil8664.t1|Name=Gchil8664.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=834bp|location=Sequence derived from alignment at tig00000088_pilon:1097862..1098695+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCCAGAACCAGTATCGTCATCGAACTATAAGTTTCTCACAGTGAG
CTACCCCGCAGAAACAATTTGTCACTGCCAACTTTCGCGACCTCCCGTAA
ATGCGCTCAACACCGAGTTATGGAGAGAGCTGCTGTCTCTGCTCACCTCT
CTTGAGAAGACGTTCCCCAAATCGACTAGGGTGTTAATCTTTTCTTCTGC
CGCTCGTGGACCTATCTTCTCCGCAGGCAACGATCTCACTGAACTGCACG
CGCCATCCACCTCTAAGGAACGCTTTTATACCTTTTGGGGACTATCTACG
CTCTTTCTGGCTCGCCTGTACAAGAGTCCTCTGTACACAATTGCTGCTAT
TCGCGGAGCCACCCCAGCAGGAGGATGTGTATTGTCTTTATGTTGCGATT
ATCGAGTCGCTTTAGAAAACACCAGAATAGGATTGAATGAGGTCGCCATT
GGTCTCACGGTTCCCAAATACTATGCGCTTTTGCTTTTGAATCTGTGCAC
TGTTCGATCGGAAGCAGAACTTTTGCTTTCAAGAGGCCAAATGATAGATG
CACGAAAAGCAAAGCGACTCGGTCTTGTTGACGATGTTCTTGCCGGAAAC
TCAAAACAGTTGATAAGTTTCGCACTGAGCACTGCAGAAAATTTTTCCGA
TGAACGCGGGGCATCCGGCCGAGCGGGTACGAAAATAGAGATACGAAGAC
AGTTTGCGGACGATTGGGAAGGTTATGCAAATGAAGAGGCGCAAAAGGGT
TGGGTAAGACTTTGTGAGCCCGATGTTGTGAAAAGTCTAGGTTCTGTCCT
TTCGAAATTGAAGACACATAGAGCTAGAATTTAA
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Coding sequence (CDS) from alignment at tig00000088_pilon:1097862..1098695+

>Gchil8664.t1 ID=Gchil8664.t1|Name=Gchil8664.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=834bp|location=Sequence derived from alignment at tig00000088_pilon:1097862..1098695+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCCAGAACCAGTATCGTCATCGAACTATAAGTTTCTCACAGTGAG
CTACCCCGCAGAAACAATTTGTCACTGCCAACTTTCGCGACCTCCCGTAA
ATGCGCTCAACACCGAGTTATGGAGAGAGCTGCTGTCTCTGCTCACCTCT
CTTGAGAAGACGTTCCCCAAATCGACTAGGGTGTTAATCTTTTCTTCTGC
CGCTCGTGGACCTATCTTCTCCGCAGGCAACGATCTCACTGAACTGCACG
CGCCATCCACCTCTAAGGAACGCTTTTATACCTTTTGGGGACTATCTACG
CTCTTTCTGGCTCGCCTGTACAAGAGTCCTCTGTACACAATTGCTGCTAT
TCGCGGAGCCACCCCAGCAGGAGGATGTGTATTGTCTTTATGTTGCGATT
ATCGAGTCGCTTTAGAAAACACCAGAATAGGATTGAATGAGGTCGCCATT
GGTCTCACGGTTCCCAAATACTATGCGCTTTTGCTTTTGAATCTGTGCAC
TGTTCGATCGGAAGCAGAACTTTTGCTTTCAAGAGGCCAAATGATAGATG
CACGAAAAGCAAAGCGACTCGGTCTTGTTGACGATGTTCTTGCCGGAAAC
TCAAAACAGTTGATAAGTTTCGCACTGAGCACTGCAGAAAATTTTTCCGA
TGAACGCGGGGCATCCGGCCGAGCGGGTACGAAAATAGAGATACGAAGAC
AGTTTGCGGACGATTGGGAAGGTTATGCAAATGAAGAGGCGCAAAAGGGT
TGGGTAAGACTTTGTGAGCCCGATGTTGTGAAAAGTCTAGGTTCTGTCCT
TTCGAAATTGAAGACACATAGAGCTAGAATTTAA
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