Gchil8661.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8661.t1
Unique NameGchil8661.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length288
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:1040583..1041446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708445.1
Preferred nameSC5D
PFAMsFA_hydroxylase
Max annot lvl2759|Eukaryota
KEGG rclassRC00904
KEGG koko:K00227
KEGG ReactionR07215,R07486,R07491,R07505
KEGG Pathwayko00100,ko01100,ko01110,ko01130,map00100,map01100,map01110,map01130
KEGG ModuleM00101,M00102
GOsGO:0000139,GO:0000248,GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005789,GO:0005794,GO:0006066,GO:0006082,GO:0006629,GO:0006631,GO:0006694,GO:0006695,GO:0006696,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008204,GO:0008610,GO:0009058,GO:0009889,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0016491,GO:0016705,GO:0016717,GO:0019216,GO:0019218,GO:0019222,GO:0019752,GO:0030176,GO:0031090,GO:0031224,GO:0031227,GO:0031974,GO:0031984,GO:0032787,GO:0033489,GO:0033490,GO:0042175,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045540,GO:0046165,GO:0046872,GO:0046890,GO:0046914,GO:0046996,GO:0050046,GO:0050789,GO:0050810,GO:0055114,GO:0062012,GO:0065007,GO:0070013,GO:0070704,GO:0071704,GO:0080090,GO:0090181,GO:0097384,GO:0098588,GO:0098791,GO:0098827,GO:0106118,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653,GO:1902930
Evalue1.61e-105
EggNOG OGsCOG3000@1|root,KOG0872@2759|Eukaryota
EC1.14.19.20
DescriptionC-5 sterol desaturase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8661Gchil8661Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 1040583..1041446 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8661.t1.stop1Gchil8661.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 1040583..1040585 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8661.t1.CDS1Gchil8661.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 1040583..1041446 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8661.t1.exon1Gchil8661.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 1040583..1041446 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8661.t1.start1Gchil8661.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 1041444..1041446 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8661.t1Gchil8661.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 1040583..1041446 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8661.t1 ID=Gchil8661.t1|Name=Gchil8661.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=288bp
MEALGIMARLSDLNAHSMVYMLNDKVFNQILPSEYPLSLLRRFFVTWFFL
YSGSLILYFTFASLDYLLYFCVLGRRNLPKGYLKTTEVGREIFTSVTSLA
LMAGLSTPIEIMVQLGYSKLYHEASQYGYTYLFISPLLFLLFSDCIIYFV
HRGLHHPAIYKYIHKHHHSFINTTPFAAFAFHPLDGYAQGIAYQIFIFLL
PFHSAVHLISLVVVSWWTINIHDRFTWGIPGVNGAAHHTIHHTTFRSNYG
QYTTLWDKLCGTFRDPKQWKKSGAPSMTEQMVYGKDA*
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spliced messenger RNA

>Gchil8661.t1 ID=Gchil8661.t1|Name=Gchil8661.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00000088_pilon:1040583..1041446- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGCGCTAGGCATCATGGCGCGTCTATCCGACCTCAATGCACATTC
CATGGTGTACATGCTCAATGACAAAGTCTTTAATCAGATTCTTCCGTCTG
AGTATCCCCTCTCTCTTTTGCGTCGTTTCTTCGTCACTTGGTTCTTCCTT
TATAGTGGGTCGCTCATATTGTATTTCACCTTCGCTTCTCTGGATTACCT
TTTGTACTTTTGCGTTCTTGGTCGTCGTAATCTTCCAAAAGGATACTTGA
AAACAACTGAGGTGGGAAGGGAGATTTTCACCAGCGTCACCTCGCTTGCG
CTAATGGCTGGCTTAAGTACACCTATTGAAATCATGGTTCAGCTTGGATA
CAGCAAGCTTTACCACGAAGCCTCGCAATATGGTTACACCTATCTTTTCA
TTTCTCCACTCCTCTTCCTTTTGTTCAGTGATTGTATCATCTACTTCGTT
CACAGAGGTTTGCATCATCCGGCAATTTACAAATACATCCACAAGCATCA
CCATTCTTTCATCAACACCACCCCGTTTGCAGCATTTGCTTTCCATCCTT
TAGATGGTTATGCACAAGGGATTGCCTACCAAATCTTTATATTTTTGCTA
CCGTTTCATTCAGCCGTTCATCTCATTTCACTTGTGGTTGTTTCGTGGTG
GACAATCAACATTCATGATCGATTTACTTGGGGAATCCCCGGCGTAAATG
GAGCTGCACATCACACAATTCACCATACCACTTTCAGATCCAACTACGGT
CAATATACCACCTTGTGGGACAAGCTCTGCGGTACTTTTCGTGATCCGAA
ACAATGGAAAAAGTCTGGTGCACCCTCAATGACAGAACAAATGGTTTATG
GAAAGGATGCATAG
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protein sequence of Gchil8661.t1

>Gchil8661.t1 ID=Gchil8661.t1|Name=Gchil8661.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=288bp
MEALGIMARLSDLNAHSMVYMLNDKVFNQILPSEYPLSLLRRFFVTWFFL
YSGSLILYFTFASLDYLLYFCVLGRRNLPKGYLKTTEVGREIFTSVTSLA
LMAGLSTPIEIMVQLGYSKLYHEASQYGYTYLFISPLLFLLFSDCIIYFV
HRGLHHPAIYKYIHKHHHSFINTTPFAAFAFHPLDGYAQGIAYQIFIFLL
PFHSAVHLISLVVVSWWTINIHDRFTWGIPGVNGAAHHTIHHTTFRSNYG
QYTTLWDKLCGTFRDPKQWKKSGAPSMTEQMVYGKDA*
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mRNA from alignment at tig00000088_pilon:1040583..1041446-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8661.t1 ID=Gchil8661.t1|Name=Gchil8661.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00000088_pilon:1040583..1041446- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGCGCTAGGCATCATGGCGCGTCTATCCGACCTCAATGCACATTC
CATGGTGTACATGCTCAATGACAAAGTCTTTAATCAGATTCTTCCGTCTG
AGTATCCCCTCTCTCTTTTGCGTCGTTTCTTCGTCACTTGGTTCTTCCTT
TATAGTGGGTCGCTCATATTGTATTTCACCTTCGCTTCTCTGGATTACCT
TTTGTACTTTTGCGTTCTTGGTCGTCGTAATCTTCCAAAAGGATACTTGA
AAACAACTGAGGTGGGAAGGGAGATTTTCACCAGCGTCACCTCGCTTGCG
CTAATGGCTGGCTTAAGTACACCTATTGAAATCATGGTTCAGCTTGGATA
CAGCAAGCTTTACCACGAAGCCTCGCAATATGGTTACACCTATCTTTTCA
TTTCTCCACTCCTCTTCCTTTTGTTCAGTGATTGTATCATCTACTTCGTT
CACAGAGGTTTGCATCATCCGGCAATTTACAAATACATCCACAAGCATCA
CCATTCTTTCATCAACACCACCCCGTTTGCAGCATTTGCTTTCCATCCTT
TAGATGGTTATGCACAAGGGATTGCCTACCAAATCTTTATATTTTTGCTA
CCGTTTCATTCAGCCGTTCATCTCATTTCACTTGTGGTTGTTTCGTGGTG
GACAATCAACATTCATGATCGATTTACTTGGGGAATCCCCGGCGTAAATG
GAGCTGCACATCACACAATTCACCATACCACTTTCAGATCCAACTACGGT
CAATATACCACCTTGTGGGACAAGCTCTGCGGTACTTTTCGTGATCCGAA
ACAATGGAAAAAGTCTGGTGCACCCTCAATGACAGAACAAATGGTTTATG
GAAAGGATGCATAG
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Coding sequence (CDS) from alignment at tig00000088_pilon:1040583..1041446-

>Gchil8661.t1 ID=Gchil8661.t1|Name=Gchil8661.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=864bp|location=Sequence derived from alignment at tig00000088_pilon:1040583..1041446- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGCGCTAGGCATCATGGCGCGTCTATCCGACCTCAATGCACATTC
CATGGTGTACATGCTCAATGACAAAGTCTTTAATCAGATTCTTCCGTCTG
AGTATCCCCTCTCTCTTTTGCGTCGTTTCTTCGTCACTTGGTTCTTCCTT
TATAGTGGGTCGCTCATATTGTATTTCACCTTCGCTTCTCTGGATTACCT
TTTGTACTTTTGCGTTCTTGGTCGTCGTAATCTTCCAAAAGGATACTTGA
AAACAACTGAGGTGGGAAGGGAGATTTTCACCAGCGTCACCTCGCTTGCG
CTAATGGCTGGCTTAAGTACACCTATTGAAATCATGGTTCAGCTTGGATA
CAGCAAGCTTTACCACGAAGCCTCGCAATATGGTTACACCTATCTTTTCA
TTTCTCCACTCCTCTTCCTTTTGTTCAGTGATTGTATCATCTACTTCGTT
CACAGAGGTTTGCATCATCCGGCAATTTACAAATACATCCACAAGCATCA
CCATTCTTTCATCAACACCACCCCGTTTGCAGCATTTGCTTTCCATCCTT
TAGATGGTTATGCACAAGGGATTGCCTACCAAATCTTTATATTTTTGCTA
CCGTTTCATTCAGCCGTTCATCTCATTTCACTTGTGGTTGTTTCGTGGTG
GACAATCAACATTCATGATCGATTTACTTGGGGAATCCCCGGCGTAAATG
GAGCTGCACATCACACAATTCACCATACCACTTTCAGATCCAACTACGGT
CAATATACCACCTTGTGGGACAAGCTCTGCGGTACTTTTCGTGATCCGAA
ACAATGGAAAAAGTCTGGTGCACCCTCAATGACAGAACAAATGGTTTATG
GAAAGGATGCATAG
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