Gchil8659.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8659.t1
Unique NameGchil8659.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length507
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:1035609..1037129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708873.1
Preferred nameD2HGDH
PFAMsFAD-oxidase_C,FAD_binding_4
Max annot lvl2759|Eukaryota
KEGG rclassRC00044
KEGG koko:K18204,ko:K21618
KEGG ReactionR11593
KEGG Pathwayko00620,map00620
GOsGO:0000166,GO:0003674,GO:0003779,GO:0003824,GO:0004457,GO:0004458,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006089,GO:0006091,GO:0006103,GO:0006807,GO:0008092,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009853,GO:0009987,GO:0010035,GO:0010038,GO:0010042,GO:0010043,GO:0015980,GO:0016053,GO:0016054,GO:0016491,GO:0016614,GO:0016898,GO:0019249,GO:0019516,GO:0019538,GO:0019752,GO:0022900,GO:0022904,GO:0030447,GO:0031974,GO:0032025,GO:0032787,GO:0036094,GO:0040007,GO:0042221,GO:0043094,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046394,GO:0046395,GO:0047545,GO:0048037,GO:0050660,GO:0050662,GO:0050896,GO:0051186,GO:0051990,GO:0055114,GO:0070013,GO:0071704,GO:0071949,GO:0072329,GO:0072330,GO:0097159,GO:0099615,GO:1901265,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901616,GO:1901617,GO:1903457
Evalue2.8e-157
EggNOG OGsCOG0277@1|root,KOG1232@2759|Eukaryota
EC1.1.99.39,1.1.99.40
DescriptionDehydrogenase
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8659Gchil8659Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 1035609..1037129 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8659.t1.stop1Gchil8659.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 1035609..1035611 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8659.t1.CDS1Gchil8659.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 1035609..1037129 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8659.t1.exon1Gchil8659.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 1035609..1037129 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8659.t1.start1Gchil8659.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 1037127..1037129 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8659.t1Gchil8659.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 1035609..1037129 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8659.t1 ID=Gchil8659.t1|Name=Gchil8659.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=507bp
MIRSIISFGRSKHQHGLVRSLAQPAIHRDNRFKQISAADINIFREMLGNS
AVITNQDDLEPYNVDWMNRFQGSSTVALKPSTTEQVSQIMQYCDMHQIAV
VPQGGNTGLVGGSVPVFDELILSLSAMTQIEGFDKNSGVVTTQAGVVLEA
LDNYVGAAGYRVPLDLGAKGSCQIGGNVATNAGGSRFVRYGPLRASVVGL
EAVLPDGRVLDAMSRIRKDNTGYDLKQLMIGAEGTLGIITRLAIACPMKS
SCIDTMIVHVTKSDHVPPLLRLAKQSLGEVLSAIEFMDASSIHMANTNLS
HVSDPLGIPHDPQHSLVLIECAGSNAEHNREKLEAFLETAFEEDLISDGI
IAESETQSNELWELRESLPEAVLKAGSAATLKYDVSVPVAHFHQMIDMAK
ERVKDLSSAQVCGWGHIGDENLHLNVAVQDSTQKDVTQQRLEPWVYEFVS
SVGGSISAEHGLGVMKAGAIGYSKGNVAVDIMRTVKAALDKNGICNPYKV
LPASSS*
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spliced messenger RNA

>Gchil8659.t1 ID=Gchil8659.t1|Name=Gchil8659.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at tig00000088_pilon:1035609..1037129- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCGGTCTATTATATCATTCGGCCGCTCGAAGCACCAACATGGTCT
CGTTAGGTCTCTAGCACAACCAGCCATTCATCGAGACAATCGTTTTAAAC
AGATATCCGCCGCAGATATCAATATTTTCCGTGAGATGTTAGGCAACTCG
GCAGTAATCACAAATCAAGATGACTTAGAACCGTATAATGTCGATTGGAT
GAACCGGTTTCAGGGGTCCAGCACTGTTGCGCTGAAACCATCCACTACTG
AGCAAGTATCCCAAATCATGCAGTACTGCGATATGCATCAAATTGCTGTT
GTACCTCAAGGTGGAAACACCGGCCTTGTGGGAGGTAGTGTTCCAGTGTT
TGATGAACTTATACTATCACTTTCAGCAATGACTCAGATTGAAGGTTTTG
ATAAGAACTCCGGCGTGGTTACAACCCAGGCAGGAGTCGTTTTAGAGGCA
CTTGACAATTATGTCGGAGCTGCTGGATATCGCGTTCCTCTTGATCTAGG
CGCCAAGGGAAGCTGTCAAATCGGCGGCAACGTCGCAACAAACGCTGGAG
GTTCTAGATTTGTCCGATATGGACCATTGCGTGCAAGTGTCGTTGGACTG
GAAGCTGTCTTGCCAGATGGTCGTGTATTAGATGCCATGAGCCGCATCAG
AAAAGACAACACTGGATACGATTTAAAACAACTCATGATTGGTGCTGAAG
GAACTCTTGGTATAATAACACGGCTGGCCATTGCTTGCCCAATGAAGAGT
TCCTGTATTGATACCATGATTGTGCACGTCACGAAATCAGATCATGTTCC
ACCGCTGTTACGATTGGCAAAACAGTCACTGGGCGAGGTTCTTTCTGCCA
TTGAATTCATGGATGCTTCTAGCATACATATGGCAAACACAAATCTCTCT
CATGTGTCCGACCCTCTCGGCATACCACACGACCCCCAACATTCTCTTGT
ACTAATTGAATGTGCAGGTAGTAACGCCGAACACAACCGTGAAAAACTCG
AAGCATTTTTGGAAACTGCCTTCGAAGAAGATCTTATTTCCGACGGTATT
ATAGCCGAGAGCGAGACACAGAGTAATGAACTCTGGGAGTTACGAGAAAG
CCTACCAGAGGCTGTTCTTAAAGCTGGTTCAGCTGCAACTCTAAAGTATG
ACGTTAGTGTACCTGTTGCTCACTTTCACCAAATGATTGATATGGCAAAG
GAGCGTGTCAAAGATCTCAGTTCTGCTCAAGTTTGTGGCTGGGGTCATAT
CGGGGATGAAAATCTACATCTTAATGTTGCTGTACAAGACAGTACACAAA
AAGATGTCACACAACAACGGTTGGAACCCTGGGTTTATGAATTCGTCTCA
AGCGTTGGAGGAAGTATTAGTGCAGAACATGGCCTTGGAGTGATGAAAGC
GGGAGCTATTGGATACTCAAAAGGGAACGTCGCCGTGGATATCATGCGGA
CTGTTAAGGCCGCTTTAGATAAGAACGGTATCTGCAATCCGTATAAAGTA
TTGCCTGCTAGCTCATCGTAA
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protein sequence of Gchil8659.t1

>Gchil8659.t1 ID=Gchil8659.t1|Name=Gchil8659.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=507bp
MIRSIISFGRSKHQHGLVRSLAQPAIHRDNRFKQISAADINIFREMLGNS
AVITNQDDLEPYNVDWMNRFQGSSTVALKPSTTEQVSQIMQYCDMHQIAV
VPQGGNTGLVGGSVPVFDELILSLSAMTQIEGFDKNSGVVTTQAGVVLEA
LDNYVGAAGYRVPLDLGAKGSCQIGGNVATNAGGSRFVRYGPLRASVVGL
EAVLPDGRVLDAMSRIRKDNTGYDLKQLMIGAEGTLGIITRLAIACPMKS
SCIDTMIVHVTKSDHVPPLLRLAKQSLGEVLSAIEFMDASSIHMANTNLS
HVSDPLGIPHDPQHSLVLIECAGSNAEHNREKLEAFLETAFEEDLISDGI
IAESETQSNELWELRESLPEAVLKAGSAATLKYDVSVPVAHFHQMIDMAK
ERVKDLSSAQVCGWGHIGDENLHLNVAVQDSTQKDVTQQRLEPWVYEFVS
SVGGSISAEHGLGVMKAGAIGYSKGNVAVDIMRTVKAALDKNGICNPYKV
LPASSS*
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mRNA from alignment at tig00000088_pilon:1035609..1037129-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8659.t1 ID=Gchil8659.t1|Name=Gchil8659.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at tig00000088_pilon:1035609..1037129- (Gracilaria chilensis NLEC103_M9 male)
ATGATTCGGTCTATTATATCATTCGGCCGCTCGAAGCACCAACATGGTCT
CGTTAGGTCTCTAGCACAACCAGCCATTCATCGAGACAATCGTTTTAAAC
AGATATCCGCCGCAGATATCAATATTTTCCGTGAGATGTTAGGCAACTCG
GCAGTAATCACAAATCAAGATGACTTAGAACCGTATAATGTCGATTGGAT
GAACCGGTTTCAGGGGTCCAGCACTGTTGCGCTGAAACCATCCACTACTG
AGCAAGTATCCCAAATCATGCAGTACTGCGATATGCATCAAATTGCTGTT
GTACCTCAAGGTGGAAACACCGGCCTTGTGGGAGGTAGTGTTCCAGTGTT
TGATGAACTTATACTATCACTTTCAGCAATGACTCAGATTGAAGGTTTTG
ATAAGAACTCCGGCGTGGTTACAACCCAGGCAGGAGTCGTTTTAGAGGCA
CTTGACAATTATGTCGGAGCTGCTGGATATCGCGTTCCTCTTGATCTAGG
CGCCAAGGGAAGCTGTCAAATCGGCGGCAACGTCGCAACAAACGCTGGAG
GTTCTAGATTTGTCCGATATGGACCATTGCGTGCAAGTGTCGTTGGACTG
GAAGCTGTCTTGCCAGATGGTCGTGTATTAGATGCCATGAGCCGCATCAG
AAAAGACAACACTGGATACGATTTAAAACAACTCATGATTGGTGCTGAAG
GAACTCTTGGTATAATAACACGGCTGGCCATTGCTTGCCCAATGAAGAGT
TCCTGTATTGATACCATGATTGTGCACGTCACGAAATCAGATCATGTTCC
ACCGCTGTTACGATTGGCAAAACAGTCACTGGGCGAGGTTCTTTCTGCCA
TTGAATTCATGGATGCTTCTAGCATACATATGGCAAACACAAATCTCTCT
CATGTGTCCGACCCTCTCGGCATACCACACGACCCCCAACATTCTCTTGT
ACTAATTGAATGTGCAGGTAGTAACGCCGAACACAACCGTGAAAAACTCG
AAGCATTTTTGGAAACTGCCTTCGAAGAAGATCTTATTTCCGACGGTATT
ATAGCCGAGAGCGAGACACAGAGTAATGAACTCTGGGAGTTACGAGAAAG
CCTACCAGAGGCTGTTCTTAAAGCTGGTTCAGCTGCAACTCTAAAGTATG
ACGTTAGTGTACCTGTTGCTCACTTTCACCAAATGATTGATATGGCAAAG
GAGCGTGTCAAAGATCTCAGTTCTGCTCAAGTTTGTGGCTGGGGTCATAT
CGGGGATGAAAATCTACATCTTAATGTTGCTGTACAAGACAGTACACAAA
AAGATGTCACACAACAACGGTTGGAACCCTGGGTTTATGAATTCGTCTCA
AGCGTTGGAGGAAGTATTAGTGCAGAACATGGCCTTGGAGTGATGAAAGC
GGGAGCTATTGGATACTCAAAAGGGAACGTCGCCGTGGATATCATGCGGA
CTGTTAAGGCCGCTTTAGATAAGAACGGTATCTGCAATCCGTATAAAGTA
TTGCCTGCTAGCTCATCGTAA
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Coding sequence (CDS) from alignment at tig00000088_pilon:1035609..1037129-

>Gchil8659.t1 ID=Gchil8659.t1|Name=Gchil8659.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1521bp|location=Sequence derived from alignment at tig00000088_pilon:1035609..1037129- (Gracilaria chilensis NLEC103_M9 male)
ATGATTCGGTCTATTATATCATTCGGCCGCTCGAAGCACCAACATGGTCT
CGTTAGGTCTCTAGCACAACCAGCCATTCATCGAGACAATCGTTTTAAAC
AGATATCCGCCGCAGATATCAATATTTTCCGTGAGATGTTAGGCAACTCG
GCAGTAATCACAAATCAAGATGACTTAGAACCGTATAATGTCGATTGGAT
GAACCGGTTTCAGGGGTCCAGCACTGTTGCGCTGAAACCATCCACTACTG
AGCAAGTATCCCAAATCATGCAGTACTGCGATATGCATCAAATTGCTGTT
GTACCTCAAGGTGGAAACACCGGCCTTGTGGGAGGTAGTGTTCCAGTGTT
TGATGAACTTATACTATCACTTTCAGCAATGACTCAGATTGAAGGTTTTG
ATAAGAACTCCGGCGTGGTTACAACCCAGGCAGGAGTCGTTTTAGAGGCA
CTTGACAATTATGTCGGAGCTGCTGGATATCGCGTTCCTCTTGATCTAGG
CGCCAAGGGAAGCTGTCAAATCGGCGGCAACGTCGCAACAAACGCTGGAG
GTTCTAGATTTGTCCGATATGGACCATTGCGTGCAAGTGTCGTTGGACTG
GAAGCTGTCTTGCCAGATGGTCGTGTATTAGATGCCATGAGCCGCATCAG
AAAAGACAACACTGGATACGATTTAAAACAACTCATGATTGGTGCTGAAG
GAACTCTTGGTATAATAACACGGCTGGCCATTGCTTGCCCAATGAAGAGT
TCCTGTATTGATACCATGATTGTGCACGTCACGAAATCAGATCATGTTCC
ACCGCTGTTACGATTGGCAAAACAGTCACTGGGCGAGGTTCTTTCTGCCA
TTGAATTCATGGATGCTTCTAGCATACATATGGCAAACACAAATCTCTCT
CATGTGTCCGACCCTCTCGGCATACCACACGACCCCCAACATTCTCTTGT
ACTAATTGAATGTGCAGGTAGTAACGCCGAACACAACCGTGAAAAACTCG
AAGCATTTTTGGAAACTGCCTTCGAAGAAGATCTTATTTCCGACGGTATT
ATAGCCGAGAGCGAGACACAGAGTAATGAACTCTGGGAGTTACGAGAAAG
CCTACCAGAGGCTGTTCTTAAAGCTGGTTCAGCTGCAACTCTAAAGTATG
ACGTTAGTGTACCTGTTGCTCACTTTCACCAAATGATTGATATGGCAAAG
GAGCGTGTCAAAGATCTCAGTTCTGCTCAAGTTTGTGGCTGGGGTCATAT
CGGGGATGAAAATCTACATCTTAATGTTGCTGTACAAGACAGTACACAAA
AAGATGTCACACAACAACGGTTGGAACCCTGGGTTTATGAATTCGTCTCA
AGCGTTGGAGGAAGTATTAGTGCAGAACATGGCCTTGGAGTGATGAAAGC
GGGAGCTATTGGATACTCAAAAGGGAACGTCGCCGTGGATATCATGCGGA
CTGTTAAGGCCGCTTTAGATAAGAACGGTATCTGCAATCCGTATAAAGTA
TTGCCTGCTAGCTCATCGTAA
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