Gchil8654.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8654.t1
Unique NameGchil8654.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length80
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:922076..922315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CML042CT
Preferred nameNEDD8
PFAMsubiquitin
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00004,RC00010,RC00043,RC00064,RC00089,RC02750,RC02798,RC03314
KEGG koko:K00618,ko:K01955,ko:K04708,ko:K11368,ko:K12158,ko:K14538,ko:K17619
KEGG ReactionR00256,R00259,R00575,R01395,R02978,R10948,R10949
KEGG Pathwayko00220,ko00240,ko00250,ko00600,ko01100,ko01110,ko01130,ko01210,ko01230,ko03008,map00220,map00240,map00250,map00600,map01100,map01110,map01130,map01210,map01230,map03008
KEGG ModuleM00028,M00051,M00094,M00099
GOsGO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0008589,GO:0009056,GO:0009057,GO:0009653,GO:0009889,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0010941,GO:0010942,GO:0014070,GO:0016579,GO:0019005,GO:0019219,GO:0019222,GO:0019538,GO:0019725,GO:0019827,GO:0019899,GO:0019941,GO:0023051,GO:0023057,GO:0030003,GO:0030162,GO:0030163,GO:0030431,GO:0030718,GO:0031323,GO:0031326,GO:0031386,GO:0031396,GO:0031399,GO:0031461,GO:0031625,GO:0031647,GO:0031974,GO:0031981,GO:0032268,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0036099,GO:0036211,GO:0042221,GO:0042592,GO:0042981,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043516,GO:0043518,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045116,GO:0045595,GO:0046916,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0048878,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051179,GO:0051246,GO:0051252,GO:0051338,GO:0051340,GO:0051438,GO:0051603,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0060255,GO:0060548,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0098727,GO:0098771,GO:1901564,GO:1901565,GO:1901575,GO:1901796,GO:1901797,GO:1902494,GO:1902531,GO:1902532,GO:1903320,GO:1903506,GO:1990234,GO:2000112,GO:2000736,GO:2001020,GO:2001021,GO:2001141
Evalue9.69e-36
EggNOG OGsCOG5272@1|root,KOG0005@2759|Eukaryota
EC1.1.1.102,2.3.1.1,3.1.3.48,6.3.5.5
Descriptionprotein neddylation
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009,ko03019,ko03021,ko03036,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8654Gchil8654Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 922076..922315 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8654.t1.start1Gchil8654.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 922076..922078 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8654.t1.CDS1Gchil8654.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 922076..922315 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8654.t1.exon1Gchil8654.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 922076..922315 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8654.t1.stop1Gchil8654.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 922313..922315 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8654.t1Gchil8654.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 922076..922315 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8654.t1 ID=Gchil8654.t1|Name=Gchil8654.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=80bp
MLVKVKLLTGNQTEIDIDPTDTIWRIKERVEEKAGIDPKQQRLIFGGKQL
ADDRAANEYNIEGGSVLHLVIALRGGTAL*
back to top

spliced messenger RNA

>Gchil8654.t1 ID=Gchil8654.t1|Name=Gchil8654.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=240bp|location=Sequence derived from alignment at tig00000088_pilon:922076..922315+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGTCAAAGTCAAGCTTCTCACCGGCAACCAGACCGAAATCGACAT
TGATCCTACCGACACTATCTGGCGCATTAAGGAGCGTGTCGAGGAGAAGG
CCGGCATTGACCCCAAGCAACAGAGACTCATCTTCGGCGGCAAACAACTC
GCCGATGATCGCGCCGCCAACGAGTACAACATCGAGGGAGGAAGTGTTCT
GCATCTCGTCATTGCTCTCAGAGGCGGCACTGCCTTGTGA
back to top

protein sequence of Gchil8654.t1

>Gchil8654.t1 ID=Gchil8654.t1|Name=Gchil8654.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=80bp
MLVKVKLLTGNQTEIDIDPTDTIWRIKERVEEKAGIDPKQQRLIFGGKQL
ADDRAANEYNIEGGSVLHLVIALRGGTAL*
back to top

mRNA from alignment at tig00000088_pilon:922076..922315+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8654.t1 ID=Gchil8654.t1|Name=Gchil8654.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=240bp|location=Sequence derived from alignment at tig00000088_pilon:922076..922315+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTGTCAAAGTCAAGCTTCTCACCGGCAACCAGACCGAAATCGACAT
TGATCCTACCGACACTATCTGGCGCATTAAGGAGCGTGTCGAGGAGAAGG
CCGGCATTGACCCCAAGCAACAGAGACTCATCTTCGGCGGCAAACAACTC
GCCGATGATCGCGCCGCCAACGAGTACAACATCGAGGGAGGAAGTGTTCT
GCATCTCGTCATTGCTCTCAGAGGCGGCACTGCCTTGTGA
back to top

Coding sequence (CDS) from alignment at tig00000088_pilon:922076..922315+

>Gchil8654.t1 ID=Gchil8654.t1|Name=Gchil8654.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=240bp|location=Sequence derived from alignment at tig00000088_pilon:922076..922315+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTGTCAAAGTCAAGCTTCTCACCGGCAACCAGACCGAAATCGACAT
TGATCCTACCGACACTATCTGGCGCATTAAGGAGCGTGTCGAGGAGAAGG
CCGGCATTGACCCCAAGCAACAGAGACTCATCTTCGGCGGCAAACAACTC
GCCGATGATCGCGCCGCCAACGAGTACAACATCGAGGGAGGAAGTGTTCT
GCATCTCGTCATTGCTCTCAGAGGCGGCACTGCCTTGTGA
back to top