Gchil8653.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8653.t1
Unique NameGchil8653.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length532
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:885360..886955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog232348.ADXL01000067_gene317
PFAMsCobW_C,cobW
Max annot lvl1117|Cyanobacteria
Evalue1.14e-71
EggNOG OGsCOG0523@1|root,COG0523@2|Bacteria,1G0Q9@1117|Cyanobacteria,1GYDT@1129|Synechococcus
DescriptionG3E family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8653Gchil8653Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 885360..886955 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8653.t1.stop1Gchil8653.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 885360..885362 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8653.t1.CDS1Gchil8653.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 885360..886955 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8653.t1.exon1Gchil8653.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 885360..886955 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8653.t1.start1Gchil8653.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 886953..886955 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8653.t1Gchil8653.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 885360..886955 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8653.t1 ID=Gchil8653.t1|Name=Gchil8653.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=532bp
MGFVADAPVACNAPIEPPLKKMRVSELLGISTDCTAPADHEKTLLTSSGT
WAAAEAITDAMPKGDGIPLTLLTGFLGAGKSTVLNYILKADHGLKIAVLI
NEFGQVDIDNQLVDSVAKGEEGDPIMLNNGCMCCTVSNGFMDAVYAILSR
ADAAGRLPDYFIVETTGLANPQPIMDTIEATALCEDLYLDQVLTVVDSSA
WDEQHYGSETAHKQIQAADTILLSKTDLTGHDNVTKVVKSILSIRPNARI
LRSQKGYVPIATLFDLGISMGDKPKTKKGTYSVKNAKVNKENGVITPGQT
RARERDDDGDAKSKQEHEHGHDHDHDHKKEHEHGHEYEHKQEHEHVHEHE
HKLKQEHEHGHNHDHKHDADGKCCAPKVSKEPKSHLEQEGFSSISFVSEY
PFSLRRFKDEFVEKLPRGVFRAKGLIWFSNFDKRFVFHYSGSRYQVDEQE
WPEGVERKNQLVVIGRELDKESITKMLEVCIVKPGDESEEEFEEEEEEEY
GDANYAQVEEGEVVRSEVEGGKVDSVEEKKC*
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spliced messenger RNA

>Gchil8653.t1 ID=Gchil8653.t1|Name=Gchil8653.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1596bp|location=Sequence derived from alignment at tig00000088_pilon:885360..886955- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTTTGTCGCTGACGCTCCTGTCGCTTGTAATGCCCCTATTGAACC
GCCTCTCAAGAAGATGCGCGTCTCTGAGCTGTTGGGCATCTCCACTGACT
GCACTGCTCCCGCGGATCATGAGAAAACACTGCTCACCTCTTCAGGCACC
TGGGCTGCCGCAGAGGCAATCACGGACGCCATGCCCAAGGGTGATGGCAT
CCCGCTCACCTTGCTCACCGGATTTCTCGGCGCCGGCAAGTCCACCGTAC
TCAACTACATCCTCAAAGCTGATCATGGGCTCAAAATCGCCGTGCTCATC
AACGAATTCGGCCAAGTGGACATTGATAATCAGCTCGTGGACTCCGTCGC
CAAGGGGGAGGAGGGTGACCCTATCATGCTCAACAACGGCTGCATGTGTT
GCACCGTGTCCAATGGTTTCATGGACGCCGTGTATGCTATTTTGAGCAGG
GCTGACGCTGCCGGCCGTCTACCTGACTATTTCATCGTGGAGACAACGGG
GCTTGCCAACCCTCAACCAATCATGGATACCATCGAGGCTACCGCTCTCT
GTGAGGATCTTTACTTGGATCAGGTACTCACCGTCGTCGACTCAAGTGCC
TGGGATGAACAGCACTACGGTTCCGAGACCGCACACAAACAGATTCAGGC
TGCTGATACCATACTCCTGTCCAAGACCGATTTGACCGGCCATGATAATG
TCACTAAGGTCGTCAAATCGATTCTTTCTATTCGCCCTAATGCGAGAATT
TTACGAAGTCAGAAAGGATATGTCCCTATAGCCACTTTGTTCGACCTTGG
CATATCTATGGGCGACAAGCCAAAAACGAAAAAAGGAACGTATTCCGTAA
AGAACGCCAAGGTAAACAAGGAGAATGGGGTCATTACACCGGGTCAGACG
CGTGCCCGTGAGCGCGATGACGATGGCGACGCCAAAAGCAAACAGGAGCA
TGAACACGGGCACGACCACGACCACGACCACAAGAAGGAACACGAACATG
GGCACGAGTACGAGCACAAGCAGGAACATGAACATGTGCACGAGCACGAA
CACAAGCTCAAGCAGGAACATGAACACGGGCACAATCACGATCACAAGCA
TGATGCTGACGGTAAGTGTTGTGCGCCAAAGGTGAGCAAGGAACCAAAGT
CGCATTTGGAACAAGAAGGATTCAGCAGCATTTCGTTCGTGTCTGAATAT
CCGTTTTCCCTGAGGCGTTTCAAGGATGAGTTTGTTGAAAAGCTGCCGAG
GGGAGTATTTAGGGCCAAAGGTTTAATATGGTTCTCGAATTTTGATAAGC
GCTTTGTATTTCACTACAGCGGGTCTCGATACCAAGTTGACGAACAAGAA
TGGCCCGAGGGCGTGGAACGCAAAAACCAGCTGGTGGTGATTGGTCGCGA
ATTGGATAAAGAATCGATCACAAAAATGTTGGAAGTATGCATCGTGAAGC
CTGGGGATGAGAGCGAGGAGGAATTTGAGGAGGAGGAAGAAGAAGAGTAC
GGAGACGCAAACTATGCGCAAGTGGAAGAGGGTGAGGTGGTACGGTCTGA
AGTTGAAGGGGGGAAGGTGGACAGCGTGGAAGAGAAAAAGTGTTGA
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protein sequence of Gchil8653.t1

>Gchil8653.t1 ID=Gchil8653.t1|Name=Gchil8653.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=532bp
MGFVADAPVACNAPIEPPLKKMRVSELLGISTDCTAPADHEKTLLTSSGT
WAAAEAITDAMPKGDGIPLTLLTGFLGAGKSTVLNYILKADHGLKIAVLI
NEFGQVDIDNQLVDSVAKGEEGDPIMLNNGCMCCTVSNGFMDAVYAILSR
ADAAGRLPDYFIVETTGLANPQPIMDTIEATALCEDLYLDQVLTVVDSSA
WDEQHYGSETAHKQIQAADTILLSKTDLTGHDNVTKVVKSILSIRPNARI
LRSQKGYVPIATLFDLGISMGDKPKTKKGTYSVKNAKVNKENGVITPGQT
RARERDDDGDAKSKQEHEHGHDHDHDHKKEHEHGHEYEHKQEHEHVHEHE
HKLKQEHEHGHNHDHKHDADGKCCAPKVSKEPKSHLEQEGFSSISFVSEY
PFSLRRFKDEFVEKLPRGVFRAKGLIWFSNFDKRFVFHYSGSRYQVDEQE
WPEGVERKNQLVVIGRELDKESITKMLEVCIVKPGDESEEEFEEEEEEEY
GDANYAQVEEGEVVRSEVEGGKVDSVEEKKC*
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mRNA from alignment at tig00000088_pilon:885360..886955-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8653.t1 ID=Gchil8653.t1|Name=Gchil8653.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1596bp|location=Sequence derived from alignment at tig00000088_pilon:885360..886955- (Gracilaria chilensis NLEC103_M9 male)
ATGGGGTTTGTCGCTGACGCTCCTGTCGCTTGTAATGCCCCTATTGAACC
GCCTCTCAAGAAGATGCGCGTCTCTGAGCTGTTGGGCATCTCCACTGACT
GCACTGCTCCCGCGGATCATGAGAAAACACTGCTCACCTCTTCAGGCACC
TGGGCTGCCGCAGAGGCAATCACGGACGCCATGCCCAAGGGTGATGGCAT
CCCGCTCACCTTGCTCACCGGATTTCTCGGCGCCGGCAAGTCCACCGTAC
TCAACTACATCCTCAAAGCTGATCATGGGCTCAAAATCGCCGTGCTCATC
AACGAATTCGGCCAAGTGGACATTGATAATCAGCTCGTGGACTCCGTCGC
CAAGGGGGAGGAGGGTGACCCTATCATGCTCAACAACGGCTGCATGTGTT
GCACCGTGTCCAATGGTTTCATGGACGCCGTGTATGCTATTTTGAGCAGG
GCTGACGCTGCCGGCCGTCTACCTGACTATTTCATCGTGGAGACAACGGG
GCTTGCCAACCCTCAACCAATCATGGATACCATCGAGGCTACCGCTCTCT
GTGAGGATCTTTACTTGGATCAGGTACTCACCGTCGTCGACTCAAGTGCC
TGGGATGAACAGCACTACGGTTCCGAGACCGCACACAAACAGATTCAGGC
TGCTGATACCATACTCCTGTCCAAGACCGATTTGACCGGCCATGATAATG
TCACTAAGGTCGTCAAATCGATTCTTTCTATTCGCCCTAATGCGAGAATT
TTACGAAGTCAGAAAGGATATGTCCCTATAGCCACTTTGTTCGACCTTGG
CATATCTATGGGCGACAAGCCAAAAACGAAAAAAGGAACGTATTCCGTAA
AGAACGCCAAGGTAAACAAGGAGAATGGGGTCATTACACCGGGTCAGACG
CGTGCCCGTGAGCGCGATGACGATGGCGACGCCAAAAGCAAACAGGAGCA
TGAACACGGGCACGACCACGACCACGACCACAAGAAGGAACACGAACATG
GGCACGAGTACGAGCACAAGCAGGAACATGAACATGTGCACGAGCACGAA
CACAAGCTCAAGCAGGAACATGAACACGGGCACAATCACGATCACAAGCA
TGATGCTGACGGTAAGTGTTGTGCGCCAAAGGTGAGCAAGGAACCAAAGT
CGCATTTGGAACAAGAAGGATTCAGCAGCATTTCGTTCGTGTCTGAATAT
CCGTTTTCCCTGAGGCGTTTCAAGGATGAGTTTGTTGAAAAGCTGCCGAG
GGGAGTATTTAGGGCCAAAGGTTTAATATGGTTCTCGAATTTTGATAAGC
GCTTTGTATTTCACTACAGCGGGTCTCGATACCAAGTTGACGAACAAGAA
TGGCCCGAGGGCGTGGAACGCAAAAACCAGCTGGTGGTGATTGGTCGCGA
ATTGGATAAAGAATCGATCACAAAAATGTTGGAAGTATGCATCGTGAAGC
CTGGGGATGAGAGCGAGGAGGAATTTGAGGAGGAGGAAGAAGAAGAGTAC
GGAGACGCAAACTATGCGCAAGTGGAAGAGGGTGAGGTGGTACGGTCTGA
AGTTGAAGGGGGGAAGGTGGACAGCGTGGAAGAGAAAAAGTGTTGA
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Coding sequence (CDS) from alignment at tig00000088_pilon:885360..886955-

>Gchil8653.t1 ID=Gchil8653.t1|Name=Gchil8653.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1596bp|location=Sequence derived from alignment at tig00000088_pilon:885360..886955- (Gracilaria chilensis NLEC103_M9 male)
ATGGGGTTTGTCGCTGACGCTCCTGTCGCTTGTAATGCCCCTATTGAACC
GCCTCTCAAGAAGATGCGCGTCTCTGAGCTGTTGGGCATCTCCACTGACT
GCACTGCTCCCGCGGATCATGAGAAAACACTGCTCACCTCTTCAGGCACC
TGGGCTGCCGCAGAGGCAATCACGGACGCCATGCCCAAGGGTGATGGCAT
CCCGCTCACCTTGCTCACCGGATTTCTCGGCGCCGGCAAGTCCACCGTAC
TCAACTACATCCTCAAAGCTGATCATGGGCTCAAAATCGCCGTGCTCATC
AACGAATTCGGCCAAGTGGACATTGATAATCAGCTCGTGGACTCCGTCGC
CAAGGGGGAGGAGGGTGACCCTATCATGCTCAACAACGGCTGCATGTGTT
GCACCGTGTCCAATGGTTTCATGGACGCCGTGTATGCTATTTTGAGCAGG
GCTGACGCTGCCGGCCGTCTACCTGACTATTTCATCGTGGAGACAACGGG
GCTTGCCAACCCTCAACCAATCATGGATACCATCGAGGCTACCGCTCTCT
GTGAGGATCTTTACTTGGATCAGGTACTCACCGTCGTCGACTCAAGTGCC
TGGGATGAACAGCACTACGGTTCCGAGACCGCACACAAACAGATTCAGGC
TGCTGATACCATACTCCTGTCCAAGACCGATTTGACCGGCCATGATAATG
TCACTAAGGTCGTCAAATCGATTCTTTCTATTCGCCCTAATGCGAGAATT
TTACGAAGTCAGAAAGGATATGTCCCTATAGCCACTTTGTTCGACCTTGG
CATATCTATGGGCGACAAGCCAAAAACGAAAAAAGGAACGTATTCCGTAA
AGAACGCCAAGGTAAACAAGGAGAATGGGGTCATTACACCGGGTCAGACG
CGTGCCCGTGAGCGCGATGACGATGGCGACGCCAAAAGCAAACAGGAGCA
TGAACACGGGCACGACCACGACCACGACCACAAGAAGGAACACGAACATG
GGCACGAGTACGAGCACAAGCAGGAACATGAACATGTGCACGAGCACGAA
CACAAGCTCAAGCAGGAACATGAACACGGGCACAATCACGATCACAAGCA
TGATGCTGACGGTAAGTGTTGTGCGCCAAAGGTGAGCAAGGAACCAAAGT
CGCATTTGGAACAAGAAGGATTCAGCAGCATTTCGTTCGTGTCTGAATAT
CCGTTTTCCCTGAGGCGTTTCAAGGATGAGTTTGTTGAAAAGCTGCCGAG
GGGAGTATTTAGGGCCAAAGGTTTAATATGGTTCTCGAATTTTGATAAGC
GCTTTGTATTTCACTACAGCGGGTCTCGATACCAAGTTGACGAACAAGAA
TGGCCCGAGGGCGTGGAACGCAAAAACCAGCTGGTGGTGATTGGTCGCGA
ATTGGATAAAGAATCGATCACAAAAATGTTGGAAGTATGCATCGTGAAGC
CTGGGGATGAGAGCGAGGAGGAATTTGAGGAGGAGGAAGAAGAAGAGTAC
GGAGACGCAAACTATGCGCAAGTGGAAGAGGGTGAGGTGGTACGGTCTGA
AGTTGAAGGGGGGAAGGTGGACAGCGTGGAAGAGAAAAAGTGTTGA
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