Gchil8645.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8645.t1
Unique NameGchil8645.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length762
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:874373..876658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8645Gchil8645Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 874373..876658 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8645.t1.stop1Gchil8645.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 874373..874375 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8645.t1.CDS1Gchil8645.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 874373..876658 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8645.t1.exon1Gchil8645.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 874373..876658 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8645.t1.start1Gchil8645.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 876656..876658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8645.t1Gchil8645.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 874373..876658 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8645.t1 ID=Gchil8645.t1|Name=Gchil8645.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=762bp
MVSLQVFTVRSFIVLLVVVGTVTNAAPVQHHGGRASYRQLFNITASYGFK
TNEKANKTILLNNGAAENRITYILHLQSNEAITAIIHISTDPKIITTTSE
IRQQLPHQSKTLVNFTLLHEFDGHVGVANYNLLVYTNVSQYRASGTYTVA
GIVVFASEKRTPMSIASGINSPGLAFNPSSSENNADGGYIRLELLYQPVG
SDIIEIPPSLKHVLSNARVEVKDVMYGINSTLVSYDDSCSLVKNPMESIA
PSKPSMRCGICFNDTDQNLYITVNPERSGTSIIQLTIPDIEVDEEIFETD
IRVFVKKPAIVHPVVLIQPDTKFVLDYFGTEVIYLQMYNIIQPDQPFNAT
DFIIDLDMGRYASIDISLSRFEQPIQTIAFVVQPPGKEDPGVLKKIQVAL
ASMEDSVLDSLEQTPDVLSDMEPMPTGSIRPGQELFETKFSLGPFALENT
TVFQAESEYPKFHLPVVSINDPYSIEQLPESSVHSVYIRMGQNSDYYESN
VHVIIPPPKSLRTAKNVLNNPLLTIFASNETAIVSSVLEGGNVEHVLVFL
FLADYSIPTFSEHKSRQLSQALANAIGNKPDETVMSGNLTQLISNSSGIV
VTYAIPVPNDSKIIANDVKNNRVDIRDKVASEIWIPPSRLALLNAVQYDP
SSPSIIDAVSSPESVLGGLSGPLLAVIIVLVIVALIPLSALCFGYMMAGT
EQTNSSSPQSGQSSESPPKMPPVLRDTLGRASEEENQDSFKMDEEMRQQG
YYDASVASSEQ*
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spliced messenger RNA

>Gchil8645.t1 ID=Gchil8645.t1|Name=Gchil8645.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2286bp|location=Sequence derived from alignment at tig00000088_pilon:874373..876658- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTCGTTGCAGGTCTTTACCGTTCGAAGCTTCATTGTCCTTCTTGT
CGTGGTCGGTACCGTCACAAACGCTGCCCCAGTTCAACATCATGGCGGCC
GTGCCTCATACCGCCAACTCTTCAACATCACTGCTTCATACGGCTTCAAA
ACCAACGAAAAAGCGAACAAAACCATCCTTTTGAACAATGGTGCAGCCGA
GAATCGAATCACCTACATTCTTCATTTGCAGTCAAACGAAGCTATTACAG
CAATCATTCACATTTCAACAGATCCAAAAATCATCACGACCACTTCTGAA
ATAAGACAACAGCTTCCACATCAATCGAAAACTCTTGTCAACTTCACCCT
CTTGCATGAGTTTGATGGACACGTTGGTGTTGCCAACTACAATCTACTGG
TCTACACCAACGTTTCTCAGTATCGTGCATCGGGTACGTATACCGTGGCG
GGTATTGTTGTCTTTGCCTCGGAAAAACGAACGCCCATGTCTATTGCATC
TGGTATCAATTCTCCGGGACTTGCGTTTAACCCATCGTCGTCTGAGAACA
ACGCAGATGGCGGATATATTCGACTTGAACTTCTGTATCAGCCCGTTGGA
TCTGATATAATTGAAATCCCGCCTTCTTTGAAACATGTCCTTTCCAACGC
AAGAGTGGAGGTCAAAGATGTTATGTACGGTATCAATTCTACACTCGTAT
CGTACGATGACTCTTGCTCTCTCGTCAAGAATCCAATGGAATCAATAGCC
CCGTCGAAACCATCTATGCGGTGTGGAATATGTTTCAATGACACTGATCA
AAACCTTTACATCACTGTCAATCCGGAAAGAAGTGGTACGTCGATAATCC
AACTTACAATTCCAGACATTGAAGTGGATGAAGAAATATTTGAAACGGAT
ATAAGGGTATTCGTGAAGAAGCCAGCTATTGTGCACCCAGTGGTTCTTAT
TCAACCTGACACGAAATTCGTGCTTGACTACTTTGGGACAGAAGTTATTT
ATCTCCAAATGTACAACATTATACAGCCAGATCAACCTTTCAATGCAACG
GATTTCATCATTGACCTAGACATGGGTCGATACGCATCCATAGATATCTC
TTTATCACGATTTGAACAACCTATTCAGACCATCGCGTTTGTGGTACAAC
CCCCTGGCAAGGAAGATCCGGGCGTTTTGAAAAAGATCCAAGTCGCCCTT
GCGAGCATGGAAGATTCTGTATTAGACTCTCTTGAACAGACACCCGATGT
TCTCTCTGACATGGAACCTATGCCAACTGGCAGCATCCGACCAGGTCAAG
AACTTTTCGAAACCAAGTTTTCGCTAGGCCCATTCGCTCTTGAAAACACC
ACCGTGTTCCAGGCTGAGAGCGAGTATCCCAAGTTTCATCTACCTGTAGT
AAGTATCAATGACCCCTATTCAATCGAGCAGCTTCCAGAAAGTTCCGTGC
ATTCCGTTTACATTCGAATGGGTCAAAACAGTGACTACTATGAATCAAAT
GTTCATGTCATTATTCCCCCACCCAAATCCTTACGGACAGCCAAAAATGT
TCTGAACAACCCTCTTTTGACCATTTTTGCCTCGAATGAAACCGCTATTG
TCTCTTCCGTGCTTGAGGGGGGTAATGTAGAACATGTTCTTGTATTCCTT
TTCCTGGCGGACTACAGCATCCCGACATTCTCGGAGCACAAATCAAGACA
ACTTTCTCAGGCTCTGGCAAATGCTATTGGGAATAAGCCGGATGAAACTG
TAATGAGCGGGAATTTGACGCAACTAATATCAAATAGTTCAGGAATTGTT
GTTACGTACGCCATTCCAGTTCCGAACGACTCCAAAATTATCGCTAACGA
TGTTAAAAACAACAGAGTGGACATTCGAGATAAGGTAGCCTCGGAAATCT
GGATCCCCCCGAGCCGACTGGCTTTGTTGAATGCGGTGCAATATGATCCG
TCCTCACCATCAATAATTGACGCCGTAAGTAGTCCGGAAAGTGTATTGGG
GGGGCTTAGCGGTCCACTGCTAGCAGTAATTATAGTGCTAGTAATCGTGG
CACTAATACCATTATCAGCGCTTTGTTTCGGCTATATGATGGCAGGCACT
GAGCAAACAAACTCATCCTCACCTCAAAGCGGTCAATCAAGCGAGTCTCC
TCCAAAGATGCCACCTGTTTTGAGAGATACTCTGGGAAGAGCAAGTGAAG
AAGAGAATCAGGATTCATTCAAGATGGATGAAGAAATGCGTCAACAAGGT
TACTACGACGCCAGTGTTGCATCATCAGAGCAGTAG
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protein sequence of Gchil8645.t1

>Gchil8645.t1 ID=Gchil8645.t1|Name=Gchil8645.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=762bp
MVSLQVFTVRSFIVLLVVVGTVTNAAPVQHHGGRASYRQLFNITASYGFK
TNEKANKTILLNNGAAENRITYILHLQSNEAITAIIHISTDPKIITTTSE
IRQQLPHQSKTLVNFTLLHEFDGHVGVANYNLLVYTNVSQYRASGTYTVA
GIVVFASEKRTPMSIASGINSPGLAFNPSSSENNADGGYIRLELLYQPVG
SDIIEIPPSLKHVLSNARVEVKDVMYGINSTLVSYDDSCSLVKNPMESIA
PSKPSMRCGICFNDTDQNLYITVNPERSGTSIIQLTIPDIEVDEEIFETD
IRVFVKKPAIVHPVVLIQPDTKFVLDYFGTEVIYLQMYNIIQPDQPFNAT
DFIIDLDMGRYASIDISLSRFEQPIQTIAFVVQPPGKEDPGVLKKIQVAL
ASMEDSVLDSLEQTPDVLSDMEPMPTGSIRPGQELFETKFSLGPFALENT
TVFQAESEYPKFHLPVVSINDPYSIEQLPESSVHSVYIRMGQNSDYYESN
VHVIIPPPKSLRTAKNVLNNPLLTIFASNETAIVSSVLEGGNVEHVLVFL
FLADYSIPTFSEHKSRQLSQALANAIGNKPDETVMSGNLTQLISNSSGIV
VTYAIPVPNDSKIIANDVKNNRVDIRDKVASEIWIPPSRLALLNAVQYDP
SSPSIIDAVSSPESVLGGLSGPLLAVIIVLVIVALIPLSALCFGYMMAGT
EQTNSSSPQSGQSSESPPKMPPVLRDTLGRASEEENQDSFKMDEEMRQQG
YYDASVASSEQ*
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mRNA from alignment at tig00000088_pilon:874373..876658-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8645.t1 ID=Gchil8645.t1|Name=Gchil8645.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2286bp|location=Sequence derived from alignment at tig00000088_pilon:874373..876658- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTTCGTTGCAGGTCTTTACCGTTCGAAGCTTCATTGTCCTTCTTGT
CGTGGTCGGTACCGTCACAAACGCTGCCCCAGTTCAACATCATGGCGGCC
GTGCCTCATACCGCCAACTCTTCAACATCACTGCTTCATACGGCTTCAAA
ACCAACGAAAAAGCGAACAAAACCATCCTTTTGAACAATGGTGCAGCCGA
GAATCGAATCACCTACATTCTTCATTTGCAGTCAAACGAAGCTATTACAG
CAATCATTCACATTTCAACAGATCCAAAAATCATCACGACCACTTCTGAA
ATAAGACAACAGCTTCCACATCAATCGAAAACTCTTGTCAACTTCACCCT
CTTGCATGAGTTTGATGGACACGTTGGTGTTGCCAACTACAATCTACTGG
TCTACACCAACGTTTCTCAGTATCGTGCATCGGGTACGTATACCGTGGCG
GGTATTGTTGTCTTTGCCTCGGAAAAACGAACGCCCATGTCTATTGCATC
TGGTATCAATTCTCCGGGACTTGCGTTTAACCCATCGTCGTCTGAGAACA
ACGCAGATGGCGGATATATTCGACTTGAACTTCTGTATCAGCCCGTTGGA
TCTGATATAATTGAAATCCCGCCTTCTTTGAAACATGTCCTTTCCAACGC
AAGAGTGGAGGTCAAAGATGTTATGTACGGTATCAATTCTACACTCGTAT
CGTACGATGACTCTTGCTCTCTCGTCAAGAATCCAATGGAATCAATAGCC
CCGTCGAAACCATCTATGCGGTGTGGAATATGTTTCAATGACACTGATCA
AAACCTTTACATCACTGTCAATCCGGAAAGAAGTGGTACGTCGATAATCC
AACTTACAATTCCAGACATTGAAGTGGATGAAGAAATATTTGAAACGGAT
ATAAGGGTATTCGTGAAGAAGCCAGCTATTGTGCACCCAGTGGTTCTTAT
TCAACCTGACACGAAATTCGTGCTTGACTACTTTGGGACAGAAGTTATTT
ATCTCCAAATGTACAACATTATACAGCCAGATCAACCTTTCAATGCAACG
GATTTCATCATTGACCTAGACATGGGTCGATACGCATCCATAGATATCTC
TTTATCACGATTTGAACAACCTATTCAGACCATCGCGTTTGTGGTACAAC
CCCCTGGCAAGGAAGATCCGGGCGTTTTGAAAAAGATCCAAGTCGCCCTT
GCGAGCATGGAAGATTCTGTATTAGACTCTCTTGAACAGACACCCGATGT
TCTCTCTGACATGGAACCTATGCCAACTGGCAGCATCCGACCAGGTCAAG
AACTTTTCGAAACCAAGTTTTCGCTAGGCCCATTCGCTCTTGAAAACACC
ACCGTGTTCCAGGCTGAGAGCGAGTATCCCAAGTTTCATCTACCTGTAGT
AAGTATCAATGACCCCTATTCAATCGAGCAGCTTCCAGAAAGTTCCGTGC
ATTCCGTTTACATTCGAATGGGTCAAAACAGTGACTACTATGAATCAAAT
GTTCATGTCATTATTCCCCCACCCAAATCCTTACGGACAGCCAAAAATGT
TCTGAACAACCCTCTTTTGACCATTTTTGCCTCGAATGAAACCGCTATTG
TCTCTTCCGTGCTTGAGGGGGGTAATGTAGAACATGTTCTTGTATTCCTT
TTCCTGGCGGACTACAGCATCCCGACATTCTCGGAGCACAAATCAAGACA
ACTTTCTCAGGCTCTGGCAAATGCTATTGGGAATAAGCCGGATGAAACTG
TAATGAGCGGGAATTTGACGCAACTAATATCAAATAGTTCAGGAATTGTT
GTTACGTACGCCATTCCAGTTCCGAACGACTCCAAAATTATCGCTAACGA
TGTTAAAAACAACAGAGTGGACATTCGAGATAAGGTAGCCTCGGAAATCT
GGATCCCCCCGAGCCGACTGGCTTTGTTGAATGCGGTGCAATATGATCCG
TCCTCACCATCAATAATTGACGCCGTAAGTAGTCCGGAAAGTGTATTGGG
GGGGCTTAGCGGTCCACTGCTAGCAGTAATTATAGTGCTAGTAATCGTGG
CACTAATACCATTATCAGCGCTTTGTTTCGGCTATATGATGGCAGGCACT
GAGCAAACAAACTCATCCTCACCTCAAAGCGGTCAATCAAGCGAGTCTCC
TCCAAAGATGCCACCTGTTTTGAGAGATACTCTGGGAAGAGCAAGTGAAG
AAGAGAATCAGGATTCATTCAAGATGGATGAAGAAATGCGTCAACAAGGT
TACTACGACGCCAGTGTTGCATCATCAGAGCAGTAG
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Coding sequence (CDS) from alignment at tig00000088_pilon:874373..876658-

>Gchil8645.t1 ID=Gchil8645.t1|Name=Gchil8645.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2286bp|location=Sequence derived from alignment at tig00000088_pilon:874373..876658- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTTCGTTGCAGGTCTTTACCGTTCGAAGCTTCATTGTCCTTCTTGT
CGTGGTCGGTACCGTCACAAACGCTGCCCCAGTTCAACATCATGGCGGCC
GTGCCTCATACCGCCAACTCTTCAACATCACTGCTTCATACGGCTTCAAA
ACCAACGAAAAAGCGAACAAAACCATCCTTTTGAACAATGGTGCAGCCGA
GAATCGAATCACCTACATTCTTCATTTGCAGTCAAACGAAGCTATTACAG
CAATCATTCACATTTCAACAGATCCAAAAATCATCACGACCACTTCTGAA
ATAAGACAACAGCTTCCACATCAATCGAAAACTCTTGTCAACTTCACCCT
CTTGCATGAGTTTGATGGACACGTTGGTGTTGCCAACTACAATCTACTGG
TCTACACCAACGTTTCTCAGTATCGTGCATCGGGTACGTATACCGTGGCG
GGTATTGTTGTCTTTGCCTCGGAAAAACGAACGCCCATGTCTATTGCATC
TGGTATCAATTCTCCGGGACTTGCGTTTAACCCATCGTCGTCTGAGAACA
ACGCAGATGGCGGATATATTCGACTTGAACTTCTGTATCAGCCCGTTGGA
TCTGATATAATTGAAATCCCGCCTTCTTTGAAACATGTCCTTTCCAACGC
AAGAGTGGAGGTCAAAGATGTTATGTACGGTATCAATTCTACACTCGTAT
CGTACGATGACTCTTGCTCTCTCGTCAAGAATCCAATGGAATCAATAGCC
CCGTCGAAACCATCTATGCGGTGTGGAATATGTTTCAATGACACTGATCA
AAACCTTTACATCACTGTCAATCCGGAAAGAAGTGGTACGTCGATAATCC
AACTTACAATTCCAGACATTGAAGTGGATGAAGAAATATTTGAAACGGAT
ATAAGGGTATTCGTGAAGAAGCCAGCTATTGTGCACCCAGTGGTTCTTAT
TCAACCTGACACGAAATTCGTGCTTGACTACTTTGGGACAGAAGTTATTT
ATCTCCAAATGTACAACATTATACAGCCAGATCAACCTTTCAATGCAACG
GATTTCATCATTGACCTAGACATGGGTCGATACGCATCCATAGATATCTC
TTTATCACGATTTGAACAACCTATTCAGACCATCGCGTTTGTGGTACAAC
CCCCTGGCAAGGAAGATCCGGGCGTTTTGAAAAAGATCCAAGTCGCCCTT
GCGAGCATGGAAGATTCTGTATTAGACTCTCTTGAACAGACACCCGATGT
TCTCTCTGACATGGAACCTATGCCAACTGGCAGCATCCGACCAGGTCAAG
AACTTTTCGAAACCAAGTTTTCGCTAGGCCCATTCGCTCTTGAAAACACC
ACCGTGTTCCAGGCTGAGAGCGAGTATCCCAAGTTTCATCTACCTGTAGT
AAGTATCAATGACCCCTATTCAATCGAGCAGCTTCCAGAAAGTTCCGTGC
ATTCCGTTTACATTCGAATGGGTCAAAACAGTGACTACTATGAATCAAAT
GTTCATGTCATTATTCCCCCACCCAAATCCTTACGGACAGCCAAAAATGT
TCTGAACAACCCTCTTTTGACCATTTTTGCCTCGAATGAAACCGCTATTG
TCTCTTCCGTGCTTGAGGGGGGTAATGTAGAACATGTTCTTGTATTCCTT
TTCCTGGCGGACTACAGCATCCCGACATTCTCGGAGCACAAATCAAGACA
ACTTTCTCAGGCTCTGGCAAATGCTATTGGGAATAAGCCGGATGAAACTG
TAATGAGCGGGAATTTGACGCAACTAATATCAAATAGTTCAGGAATTGTT
GTTACGTACGCCATTCCAGTTCCGAACGACTCCAAAATTATCGCTAACGA
TGTTAAAAACAACAGAGTGGACATTCGAGATAAGGTAGCCTCGGAAATCT
GGATCCCCCCGAGCCGACTGGCTTTGTTGAATGCGGTGCAATATGATCCG
TCCTCACCATCAATAATTGACGCCGTAAGTAGTCCGGAAAGTGTATTGGG
GGGGCTTAGCGGTCCACTGCTAGCAGTAATTATAGTGCTAGTAATCGTGG
CACTAATACCATTATCAGCGCTTTGTTTCGGCTATATGATGGCAGGCACT
GAGCAAACAAACTCATCCTCACCTCAAAGCGGTCAATCAAGCGAGTCTCC
TCCAAAGATGCCACCTGTTTTGAGAGATACTCTGGGAAGAGCAAGTGAAG
AAGAGAATCAGGATTCATTCAAGATGGATGAAGAAATGCGTCAACAAGGT
TACTACGACGCCAGTGTTGCATCATCAGAGCAGTAG
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