Gchil8635.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8635.t1
Unique NameGchil8635.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length421
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:846343..848201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005644406.1
PFAMsBestrophin
Max annot lvl33090|Viridiplantae
Evalue1.43e-34
EggNOG OGsCOG3781@1|root,2RXRZ@2759|Eukaryota,381I8@33090|Viridiplantae
DescriptionBestrophin, RFP-TM, chloride channel
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8635Gchil8635Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 846343..848201 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8635.t1.stop1Gchil8635.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 846343..846345 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8635.t1.CDS1Gchil8635.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 846343..846509 -
Gchil8635.t1.CDS2Gchil8635.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 846630..846751 -
Gchil8635.t1.CDS3Gchil8635.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 846834..846869 -
Gchil8635.t1.CDS4Gchil8635.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 847011..847099 -
Gchil8635.t1.CDS5Gchil8635.t1.CDS5Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 847260..847599 -
Gchil8635.t1.CDS6Gchil8635.t1.CDS6Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 847693..848201 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8635.t1.exon1Gchil8635.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 846343..846509 -
Gchil8635.t1.exon2Gchil8635.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 846630..846751 -
Gchil8635.t1.exon3Gchil8635.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 846834..846869 -
Gchil8635.t1.exon4Gchil8635.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 847011..847099 -
Gchil8635.t1.exon5Gchil8635.t1.exon5Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 847260..847599 -
Gchil8635.t1.exon6Gchil8635.t1.exon6Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 847693..848201 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8635.t1.intron1Gchil8635.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000088_pilon 846510..846629 -
Gchil8635.t1.intron2Gchil8635.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000088_pilon 846752..846833 -
Gchil8635.t1.intron3Gchil8635.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00000088_pilon 846870..847010 -
Gchil8635.t1.intron4Gchil8635.t1.intron4Gracilaria chilensis NLEC103_M9 maleintrontig00000088_pilon 847100..847259 -
Gchil8635.t1.intron5Gchil8635.t1.intron5Gracilaria chilensis NLEC103_M9 maleintrontig00000088_pilon 847600..847692 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8635.t1.start1Gchil8635.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 848199..848201 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8635.t1Gchil8635.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 846343..848201 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8635.t1 ID=Gchil8635.t1|Name=Gchil8635.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=421bp
MQEPSTRETSSASSSDLRSLKSAASVHALDVRLEQVAEMRNDGEAPPPNN
IADETAFLNIVTVHGERLEYVDHEGEQAFKKNDKRRENEPFLRRWLLSIV
RGRAMPIIPLLSTTCWAALAVTLTWVSRRNYEPHLNGDCRWWCTPLAVDG
NALSYVGFALFLLTSFRVSEAYGRYMEAVRVWTGIAGTVTSFTKYVVQAF
PPGTFHRGDQERILGFLVAFAVALKRQLRGERDLRELKGVLIPEDLAELQ
NAPSMPSHCLYIISAYLLSAQRREDRLPQAFIVHLIRWVADLAGAADTCM
QIKTMPAPYSYISHLNTFLTLWLFFLPFALVETTGWLTIAIVAFISYGIL
GVVSNAAELEDPFGGDYNDLPLGKLSQSIQDEVSLIYKQSLSQPKRKVVR
EVNDFELRGHHDYWLKPDSI*
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spliced messenger RNA

>Gchil8635.t1 ID=Gchil8635.t1|Name=Gchil8635.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1263bp|location=Sequence derived from alignment at tig00000088_pilon:846343..848201- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGAACCCTCTACAAGGGAAACCTCATCTGCTTCCTCATCAGATTT
GCGCTCTCTGAAGTCTGCCGCATCCGTACATGCATTGGATGTGCGTCTTG
AACAGGTCGCAGAGATGAGGAACGACGGCGAAGCCCCACCCCCAAACAAT
ATAGCTGATGAAACCGCATTTTTGAATATCGTGACTGTGCACGGGGAAAG
GCTCGAGTACGTTGACCATGAAGGTGAGCAGGCATTCAAAAAGAACGACA
AAAGGAGAGAGAACGAGCCGTTTCTCCGTCGCTGGCTACTCAGTATCGTA
CGCGGTCGCGCAATGCCCATTATTCCTTTGCTTTCGACCACCTGTTGGGC
TGCTCTAGCCGTAACACTCACTTGGGTTTCAAGGAGGAATTATGAGCCTC
ATCTGAATGGAGATTGCAGATGGTGGTGCACTCCGTTGGCAGTAGATGGC
AATGCGCTATCATACGTTGGATTTGCATTGTTCTTGTTGACGAGCTTTCG
GGTCTCCGAAGCGTATGGACGATATATGGAAGCCGTTCGAGTATGGACGG
GGATCGCAGGCACCGTCACAAGTTTCACTAAGTATGTTGTGCAAGCGTTT
CCACCGGGTACGTTTCATCGCGGGGACCAAGAACGTATTCTAGGATTCCT
GGTAGCCTTTGCCGTAGCTCTGAAAAGACAGCTTCGTGGCGAAAGAGACT
TGCGTGAACTGAAGGGTGTCTTAATTCCCGAGGACTTGGCCGAGCTTCAA
AACGCCCCAAGCATGCCTTCCCACTGTCTTTACATTATTTCTGCATATCT
TCTTTCGGCTCAGCGACGTGAGGATCGTCTTCCGCAAGCGTTTATTGTGC
ATTTGATACGCTGGGTTGCAGATCTCGCTGGTGCTGCCGATACTTGTATG
CAGATAAAGACGATGCCTGCCCCATATTCGTACATAAGCCATTTGAACAC
ATTTCTCACTCTCTGGCTTTTCTTTCTACCGTTTGCTCTTGTTGAAACTA
CTGGATGGCTGACAATAGCCATTGTCGCTTTTATCTCGTACGGGATCCTG
GGAGTGGTTTCCAACGCGGCGGAACTCGAAGATCCATTTGGAGGCGATTA
TAACGATCTGCCATTAGGAAAGCTGTCACAATCTATTCAAGACGAAGTCT
CATTGATCTATAAGCAATCACTATCGCAGCCAAAGAGAAAGGTCGTCCGA
GAAGTGAATGATTTTGAACTTCGTGGCCATCATGACTACTGGCTCAAGCC
TGACAGCATTTGA
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protein sequence of Gchil8635.t1

>Gchil8635.t1 ID=Gchil8635.t1|Name=Gchil8635.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=421bp
MQEPSTRETSSASSSDLRSLKSAASVHALDVRLEQVAEMRNDGEAPPPNN
IADETAFLNIVTVHGERLEYVDHEGEQAFKKNDKRRENEPFLRRWLLSIV
RGRAMPIIPLLSTTCWAALAVTLTWVSRRNYEPHLNGDCRWWCTPLAVDG
NALSYVGFALFLLTSFRVSEAYGRYMEAVRVWTGIAGTVTSFTKYVVQAF
PPGTFHRGDQERILGFLVAFAVALKRQLRGERDLRELKGVLIPEDLAELQ
NAPSMPSHCLYIISAYLLSAQRREDRLPQAFIVHLIRWVADLAGAADTCM
QIKTMPAPYSYISHLNTFLTLWLFFLPFALVETTGWLTIAIVAFISYGIL
GVVSNAAELEDPFGGDYNDLPLGKLSQSIQDEVSLIYKQSLSQPKRKVVR
EVNDFELRGHHDYWLKPDSI*
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mRNA from alignment at tig00000088_pilon:846343..848201-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8635.t1 ID=Gchil8635.t1|Name=Gchil8635.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1859bp|location=Sequence derived from alignment at tig00000088_pilon:846343..848201- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGGAACCCTCTACAAGGGAAACCTCATCTGCTTCCTCATCAGATTT
GCGCTCTCTGAAGTCTGCCGCATCCGTACATGCATTGGATGTGCGTCTTG
AACAGGTCGCAGAGATGAGGAACGACGGCGAAGCCCCACCCCCAAACAAT
ATAGCTGATGAAACCGCATTTTTGAATATCGTGACTGTGCACGGGGAAAG
GCTCGAGTACGTTGACCATGAAGGTGAGCAGGCATTCAAAAAGAACGACA
AAAGGAGAGAGAACGAGCCGTTTCTCCGTCGCTGGCTACTCAGTATCGTA
CGCGGTCGCGCAATGCCCATTATTCCTTTGCTTTCGACCACCTGTTGGGC
TGCTCTAGCCGTAACACTCACTTGGGTTTCAAGGAGGAATTATGAGCCTC
ATCTGAATGGAGATTGCAGATGGTGGTGCACTCCGTTGGCAGTAGATGGC
AATGCGCTATCATACGTTGGATTTGCATTGTTCTTGTTGACGAGCTTTCG
GGTCTCCGAGTAAGTATTCATAAGACAGCTCCGTTTCATAGAAACAGGCT
TCAAAGATACTAACCGAGTTCGCTCTATGCGTTCCAATTGCCATATCCGA
AGAGCGTATGGACGATATATGGAAGCCGTTCGAGTATGGACGGGGATCGC
AGGCACCGTCACAAGTTTCACTAAGTATGTTGTGCAAGCGTTTCCACCGG
GTACGTTTCATCGCGGGGACCAAGAACGTATTCTAGGATTCCTGGTAGCC
TTTGCCGTAGCTCTGAAAAGACAGCTTCGTGGCGAAAGAGACTTGCGTGA
ACTGAAGGGTGTCTTAATTCCCGAGGACTTGGCCGAGCTTCAAAACGCCC
CAAGCATGCCTTCCCACTGTCTTTACATTATTTCTGCATATCTTCTTTCG
GCTCAGCGACGTGAGGATCGTCTTCCGCAAGCGTTTATTGTGGTAAGTTG
AATGAACATTTCGCTTGAATTGTCAGTGGCGACTTCGGCACGAATACCTC
TCTTCGGAACTCATCCAGAAGCAGCCCATCAATTTCGCCAGCCTTTCTCC
TTGGATAGGTGCAACTGTTTCGACTAACTTCTCCTTGTTCATGAAACTAC
AGCATTTGATACGCTGGGTTGCAGATCTCGCTGGTGCTGCCGATACTTGT
ATGCAGATAAAGACGATGCCTGCCCCATATTCGTACATAAGGTTCGTTGT
CAAAGAGAGACTTCCCGTTCCCGGATAGCTTGTGAATTTAAGAAAGCTAT
CCCGAGCGCTTCCAGATCCAAACAGCTTGTTTTTCTTGATATGATTCTAA
CCTCTTTCTTTCACAATCGCCCTGGATCTAAGCCATTTGAACACATTTCT
CACTCTCTGGCTTTTCTTGTAAGTGTGTCGCGAGAACTTCTATGTTTGCT
TGCTTTTCTGTTGAACTGATTGTTCTGACTGTCTTATACTTCATTCTTAG
TCTACCGTTTGCTCTTGTTGAAACTACTGGATGGCTGACAATAGCCATTG
TCGCTTTTATCTCGTACGGGATCCTGGGAGTGGTTTCCAACGCGGCGGAA
CTCGAAGATCCATTTGGAGGCGGTACGTAAACCTTGAATAATCCTAGAAG
AAGCCCAAAGACGCGAAAGGTCCGAAACTATGAGTCGAAGAGGGTCTTGA
TGCAGGCATACTAATAACGAGTATCTTTTTTTTTACGCTTAGATTATAAC
GATCTGCCATTAGGAAAGCTGTCACAATCTATTCAAGACGAAGTCTCATT
GATCTATAAGCAATCACTATCGCAGCCAAAGAGAAAGGTCGTCCGAGAAG
TGAATGATTTTGAACTTCGTGGCCATCATGACTACTGGCTCAAGCCTGAC
AGCATTTGA
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Coding sequence (CDS) from alignment at tig00000088_pilon:846343..848201-

>Gchil8635.t1 ID=Gchil8635.t1|Name=Gchil8635.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1263bp|location=Sequence derived from alignment at tig00000088_pilon:846343..848201- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGGAACCCTCTACAAGGGAAACCTCATCTGCTTCCTCATCAGATTT
GCGCTCTCTGAAGTCTGCCGCATCCGTACATGCATTGGATGTGCGTCTTG
AACAGGTCGCAGAGATGAGGAACGACGGCGAAGCCCCACCCCCAAACAAT
ATAGCTGATGAAACCGCATTTTTGAATATCGTGACTGTGCACGGGGAAAG
GCTCGAGTACGTTGACCATGAAGGTGAGCAGGCATTCAAAAAGAACGACA
AAAGGAGAGAGAACGAGCCGTTTCTCCGTCGCTGGCTACTCAGTATCGTA
CGCGGTCGCGCAATGCCCATTATTCCTTTGCTTTCGACCACCTGTTGGGC
TGCTCTAGCCGTAACACTCACTTGGGTTTCAAGGAGGAATTATGAGCCTC
ATCTGAATGGAGATTGCAGATGGTGGTGCACTCCGTTGGCAGTAGATGGC
AATGCGCTATCATACGTTGGATTTGCATTGTTCTTGTTGACGAGCTTTCG
GGTCTCCGAAGCGTATGGACGATATATGGAAGCCGTTCGAGTATGGACGG
GGATCGCAGGCACCGTCACAAGTTTCACTAAGTATGTTGTGCAAGCGTTT
CCACCGGGTACGTTTCATCGCGGGGACCAAGAACGTATTCTAGGATTCCT
GGTAGCCTTTGCCGTAGCTCTGAAAAGACAGCTTCGTGGCGAAAGAGACT
TGCGTGAACTGAAGGGTGTCTTAATTCCCGAGGACTTGGCCGAGCTTCAA
AACGCCCCAAGCATGCCTTCCCACTGTCTTTACATTATTTCTGCATATCT
TCTTTCGGCTCAGCGACGTGAGGATCGTCTTCCGCAAGCGTTTATTGTGC
ATTTGATACGCTGGGTTGCAGATCTCGCTGGTGCTGCCGATACTTGTATG
CAGATAAAGACGATGCCTGCCCCATATTCGTACATAAGCCATTTGAACAC
ATTTCTCACTCTCTGGCTTTTCTTTCTACCGTTTGCTCTTGTTGAAACTA
CTGGATGGCTGACAATAGCCATTGTCGCTTTTATCTCGTACGGGATCCTG
GGAGTGGTTTCCAACGCGGCGGAACTCGAAGATCCATTTGGAGGCGATTA
TAACGATCTGCCATTAGGAAAGCTGTCACAATCTATTCAAGACGAAGTCT
CATTGATCTATAAGCAATCACTATCGCAGCCAAAGAGAAAGGTCGTCCGA
GAAGTGAATGATTTTGAACTTCGTGGCCATCATGACTACTGGCTCAAGCC
TGACAGCATTTGA
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