Gchil8633.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8633.t1
Unique NameGchil8633.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length274
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:842987..844046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMP271CT
PFAMsCreatinase_N,Creatinase_N_2,Peptidase_M24,Peptidase_M24_C,Pro_isomerase
Max annot lvl2759|Eukaryota
KEGG koko:K01262,ko:K03768
Evalue3.07e-33
EggNOG OGsCOG0652@1|root,KOG0880@2759|Eukaryota
EC3.4.11.9,5.2.1.8
Descriptionpeptidyl-prolyl cis-trans isomerase activity
COG categoryO
BRITEko00000,ko01000,ko01002,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8633Gchil8633Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 842987..844046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8633.t1Gchil8633.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 842987..844046 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8633.t1.stop1Gchil8633.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 842987..842989 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8633.t1.CDS1Gchil8633.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 842987..843028 -
Gchil8633.t1.CDS2Gchil8633.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 843128..843139 -
Gchil8633.t1.CDS3Gchil8633.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 843279..844046 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8633.t1.exon1Gchil8633.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 842987..843028 -
Gchil8633.t1.exon2Gchil8633.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 843128..843139 -
Gchil8633.t1.exon3Gchil8633.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 843279..844046 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8633.t1.intron1Gchil8633.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000088_pilon 843029..843127 -
Gchil8633.t1.intron2Gchil8633.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000088_pilon 843140..843278 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8633.t1.start1Gchil8633.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 844044..844046 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8633.t1 ID=Gchil8633.t1|Name=Gchil8633.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=274bp
MRVAAFASVALPVRVPGACVRDVACGRDDNAPQVVRASVHCAWRRRQVLQ
LIVLSVATLPPSTRVHAAPDAGAGVSASDRVFFDISVAGRPVGRVVIQLF
ADAAPVSVDTFKRLVEGTLRNRSGRTAGYKYAQAARVISGKRVDLGRVKQ
IDELNQQPGVPQRQIVTVQVPENRDSNHLSHDAKGLVSVQRGGSFEFSVL
LAPDAELDSTHLVIGRVVDGMNVVQVLGNVPTNRKTNRDGFRNIGKAIGD
ARAKVDLEDKPLQKIQITNCGLL*
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spliced messenger RNA

>Gchil8633.t1 ID=Gchil8633.t1|Name=Gchil8633.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=822bp|location=Sequence derived from alignment at tig00000088_pilon:842987..844046- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGTCGCGGCGTTTGCGAGTGTGGCGCTGCCAGTTCGAGTCCCGGG
GGCTTGCGTCCGTGATGTCGCATGCGGCCGCGATGATAACGCGCCACAAG
TTGTTCGCGCTAGCGTACACTGCGCTTGGAGACGGCGTCAGGTGTTGCAA
CTGATAGTACTGAGTGTTGCTACTCTACCCCCATCCACGCGCGTGCATGC
TGCACCGGACGCTGGTGCTGGTGTTTCTGCTTCGGACCGAGTGTTCTTTG
ACATCTCGGTGGCCGGAAGACCGGTTGGTCGCGTCGTAATCCAATTATTT
GCAGATGCGGCTCCTGTAAGCGTCGATACCTTCAAGAGGCTTGTTGAGGG
AACGCTTCGGAACCGCTCGGGACGCACAGCCGGCTACAAGTATGCGCAGG
CTGCGAGAGTCATTTCGGGAAAGCGAGTCGATTTGGGAAGGGTCAAGCAA
ATAGATGAACTTAATCAGCAGCCTGGTGTGCCACAGCGCCAGATTGTCAC
TGTTCAAGTGCCAGAAAACCGTGACTCGAACCACTTGTCGCATGACGCAA
AGGGACTTGTGTCTGTCCAGCGTGGGGGGAGCTTTGAGTTTTCCGTGTTA
TTGGCACCTGATGCAGAGCTTGATAGCACCCATTTGGTCATCGGGCGCGT
TGTTGACGGCATGAATGTCGTCCAAGTGTTAGGGAACGTCCCTACCAATC
GAAAAACCAATCGTGATGGTTTCAGAAACATTGGCAAGGCTATTGGCGAT
GCGCGAGCAAAAGTAGATTTGGAAGACAAGCCGTTGCAGAAGATTCAGAT
CACAAACTGTGGCTTGTTATGA
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protein sequence of Gchil8633.t1

>Gchil8633.t1 ID=Gchil8633.t1|Name=Gchil8633.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=274bp
MRVAAFASVALPVRVPGACVRDVACGRDDNAPQVVRASVHCAWRRRQVLQ
LIVLSVATLPPSTRVHAAPDAGAGVSASDRVFFDISVAGRPVGRVVIQLF
ADAAPVSVDTFKRLVEGTLRNRSGRTAGYKYAQAARVISGKRVDLGRVKQ
IDELNQQPGVPQRQIVTVQVPENRDSNHLSHDAKGLVSVQRGGSFEFSVL
LAPDAELDSTHLVIGRVVDGMNVVQVLGNVPTNRKTNRDGFRNIGKAIGD
ARAKVDLEDKPLQKIQITNCGLL*
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mRNA from alignment at tig00000088_pilon:842987..844046-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8633.t1 ID=Gchil8633.t1|Name=Gchil8633.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1060bp|location=Sequence derived from alignment at tig00000088_pilon:842987..844046- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGTCGCGGCGTTTGCGAGTGTGGCGCTGCCAGTTCGAGTCCCGGG
GGCTTGCGTCCGTGATGTCGCATGCGGCCGCGATGATAACGCGCCACAAG
TTGTTCGCGCTAGCGTACACTGCGCTTGGAGACGGCGTCAGGTGTTGCAA
CTGATAGTACTGAGTGTTGCTACTCTACCCCCATCCACGCGCGTGCATGC
TGCACCGGACGCTGGTGCTGGTGTTTCTGCTTCGGACCGAGTGTTCTTTG
ACATCTCGGTGGCCGGAAGACCGGTTGGTCGCGTCGTAATCCAATTATTT
GCAGATGCGGCTCCTGTAAGCGTCGATACCTTCAAGAGGCTTGTTGAGGG
AACGCTTCGGAACCGCTCGGGACGCACAGCCGGCTACAAGTATGCGCAGG
CTGCGAGAGTCATTTCGGGAAAGCGAGTCGATTTGGGAAGGGTCAAGCAA
ATAGATGAACTTAATCAGCAGCCTGGTGTGCCACAGCGCCAGATTGTCAC
TGTTCAAGTGCCAGAAAACCGTGACTCGAACCACTTGTCGCATGACGCAA
AGGGACTTGTGTCTGTCCAGCGTGGGGGGAGCTTTGAGTTTTCCGTGTTA
TTGGCACCTGATGCAGAGCTTGATAGCACCCATTTGGTCATCGGGCGCGT
TGTTGACGGCATGAATGTCGTCCAAGTGTTAGGGAACGTCCCTACCAATC
GAAAAACCAATCGTGATGGTTTCAGAAACATTGGCAAGGCTATTGGCGAT
GCGCGAGCAAAAGTAGATGTGAGTTGCGTTTATATTTATTGCTTTGATGC
GCTTCTGTTTATTAGCATATTCCAAGTACATGCAACTGACGCTGTCCTTT
TTTTTCCCCTCCCCACTGCGCCTTGTTCACGTGGCTTTGCGACTGGCGTC
CACCCAGTTGGAAGACAAGGTACGCATTCGCACTTTTCTCAACTGCTTTG
TTTATGTTTTCTGTGCAGCTCCACTGACTGTTCTTGTTCTTTCTCACATG
TCCTTTTCTGCGCCCAAGCCGTTGCAGAAGATTCAGATCACAAACTGTGG
CTTGTTATGA
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Coding sequence (CDS) from alignment at tig00000088_pilon:842987..844046-

>Gchil8633.t1 ID=Gchil8633.t1|Name=Gchil8633.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=822bp|location=Sequence derived from alignment at tig00000088_pilon:842987..844046- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGTCGCGGCGTTTGCGAGTGTGGCGCTGCCAGTTCGAGTCCCGGG
GGCTTGCGTCCGTGATGTCGCATGCGGCCGCGATGATAACGCGCCACAAG
TTGTTCGCGCTAGCGTACACTGCGCTTGGAGACGGCGTCAGGTGTTGCAA
CTGATAGTACTGAGTGTTGCTACTCTACCCCCATCCACGCGCGTGCATGC
TGCACCGGACGCTGGTGCTGGTGTTTCTGCTTCGGACCGAGTGTTCTTTG
ACATCTCGGTGGCCGGAAGACCGGTTGGTCGCGTCGTAATCCAATTATTT
GCAGATGCGGCTCCTGTAAGCGTCGATACCTTCAAGAGGCTTGTTGAGGG
AACGCTTCGGAACCGCTCGGGACGCACAGCCGGCTACAAGTATGCGCAGG
CTGCGAGAGTCATTTCGGGAAAGCGAGTCGATTTGGGAAGGGTCAAGCAA
ATAGATGAACTTAATCAGCAGCCTGGTGTGCCACAGCGCCAGATTGTCAC
TGTTCAAGTGCCAGAAAACCGTGACTCGAACCACTTGTCGCATGACGCAA
AGGGACTTGTGTCTGTCCAGCGTGGGGGGAGCTTTGAGTTTTCCGTGTTA
TTGGCACCTGATGCAGAGCTTGATAGCACCCATTTGGTCATCGGGCGCGT
TGTTGACGGCATGAATGTCGTCCAAGTGTTAGGGAACGTCCCTACCAATC
GAAAAACCAATCGTGATGGTTTCAGAAACATTGGCAAGGCTATTGGCGAT
GCGCGAGCAAAAGTAGATTTGGAAGACAAGCCGTTGCAGAAGATTCAGAT
CACAAACTGTGGCTTGTTATGA
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