Gchil8632.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8632.t1
Unique Name	Gchil8632.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	405

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:835962..837176 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMH242CT
PFAMs	Oxysterol_BP,PH
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K20456
Evalue	3.61e-70
EggNOG OGs	KOG1737@1\|root,KOG1737@2759\|Eukaryota
Description	lipid transport
COG category	O
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8632	Gchil8632	Gracilaria chilensis NLEC103_M9 male	gene	tig00000088_pilon 835962..837176 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8632.t1.start1	Gchil8632.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000088_pilon 835962..835964 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8632.t1.CDS1	Gchil8632.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000088_pilon 835962..837176 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8632.t1.exon1	Gchil8632.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000088_pilon 835962..837176 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8632.t1.stop1	Gchil8632.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000088_pilon 837174..837176 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8632.t1	Gchil8632.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000088_pilon 835962..837176 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000088_pilon:835962..837176+
coding sequence from alignment at tig00000088_pilon:835962..837176+

mRNA sequence

>Gchil8632.t1 ID=Gchil8632.t1|Name=Gchil8632.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=405bp
MTVVDFDDHVTPAELPPSPHRLPTPPERVVSPPVKPNLFAIIKDALTKDI
TRMTIPVHFNEPLSFLQRLAEDVEYHSLLDVAAHPRYARTPHRAALVAAF
VISQYSSTSARTSKPFNPLLGETFELVLPQRGLVLVAEQVSHHPPVSALF
TKGNGWTYHTAHRVRNKFLVNAMEAWPEGAVHICFDDGDHFVYEKPHTFV
NNLFFGNMWIDSAGAVTIRNRHFIASLHMKRACTVPFREGKGLGNTVGSV
FSAMDKSKKPLCNIVGNWTSHVLVDGKEVWKVSPKPPSSYTASSSLTAWA
WSLNAPPHPPSVSLPSTDSRHRPDQRALESGNHRLASSEKARLEEAQRER
RQTMEREGKHFQPRWFESYHDPDTGRKQWRYTGQYFRRKSDAIETWPHQS
PHLF*

spliced messenger RNA

>Gchil8632.t1 ID=Gchil8632.t1|Name=Gchil8632.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1215bp|location=Sequence derived from alignment at tig00000088_pilon:835962..837176+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGTCGTCGACTTTGATGACCATGTCACGCCGGCCGAGTTGCCGCC
GTCGCCGCACAGGCTGCCCACTCCGCCCGAGCGCGTCGTGTCGCCGCCCG
TTAAGCCCAACCTCTTCGCCATCATCAAGGACGCCCTCACCAAGGACATC
ACGCGCATGACCATCCCCGTGCATTTCAACGAGCCCCTGTCCTTCTTGCA
GCGTCTCGCAGAGGATGTCGAGTACCACAGCCTGCTCGACGTCGCCGCCC
ACCCGCGCTACGCGCGCACCCCGCACCGTGCCGCTCTCGTCGCCGCCTTT
GTCATCAGTCAGTACTCGTCTACGTCCGCTCGCACCTCCAAGCCCTTCAA
TCCCTTGCTCGGGGAGACCTTCGAACTCGTGCTTCCCCAACGCGGCCTTG
TCCTTGTGGCGGAGCAGGTCTCACATCACCCCCCTGTCTCCGCCCTCTTT
ACAAAGGGAAACGGGTGGACCTATCACACTGCCCATCGCGTGCGTAACAA
GTTCCTCGTCAATGCCATGGAGGCCTGGCCGGAGGGTGCCGTTCACATCT
GCTTCGATGACGGCGACCATTTTGTGTACGAAAAGCCCCACACTTTCGTC
AACAACCTCTTTTTCGGCAACATGTGGATTGATAGTGCTGGCGCAGTCAC
CATTCGCAACCGCCACTTCATCGCCTCTCTTCATATGAAGCGCGCGTGCA
CCGTGCCTTTCCGCGAGGGAAAGGGCCTTGGAAACACTGTTGGCTCCGTG
TTTTCAGCCATGGACAAGAGCAAGAAGCCTCTATGCAACATTGTCGGAAA
TTGGACCTCTCACGTTCTAGTCGATGGTAAGGAGGTTTGGAAAGTCTCCC
CTAAGCCCCCTTCATCCTATACCGCGTCCAGTTCTTTAACAGCCTGGGCT
TGGTCCCTCAATGCACCTCCGCACCCTCCAAGCGTGTCCCTTCCGAGCAC
CGACTCTCGCCACCGCCCGGACCAACGCGCTCTTGAGAGTGGAAACCATC
GTCTGGCTAGCTCTGAAAAGGCTCGATTGGAAGAGGCGCAGAGGGAGAGA
AGGCAAACCATGGAGCGAGAAGGAAAACATTTCCAGCCGCGCTGGTTTGA
ATCTTATCATGACCCTGATACTGGACGCAAACAGTGGAGGTACACGGGAC
AATACTTTCGCCGAAAGAGCGATGCGATTGAGACATGGCCTCACCAAAGC
CCACATCTCTTCTAG

protein sequence of Gchil8632.t1

>Gchil8632.t1 ID=Gchil8632.t1|Name=Gchil8632.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=405bp
MTVVDFDDHVTPAELPPSPHRLPTPPERVVSPPVKPNLFAIIKDALTKDI
TRMTIPVHFNEPLSFLQRLAEDVEYHSLLDVAAHPRYARTPHRAALVAAF
VISQYSSTSARTSKPFNPLLGETFELVLPQRGLVLVAEQVSHHPPVSALF
TKGNGWTYHTAHRVRNKFLVNAMEAWPEGAVHICFDDGDHFVYEKPHTFV
NNLFFGNMWIDSAGAVTIRNRHFIASLHMKRACTVPFREGKGLGNTVGSV
FSAMDKSKKPLCNIVGNWTSHVLVDGKEVWKVSPKPPSSYTASSSLTAWA
WSLNAPPHPPSVSLPSTDSRHRPDQRALESGNHRLASSEKARLEEAQRER
RQTMEREGKHFQPRWFESYHDPDTGRKQWRYTGQYFRRKSDAIETWPHQS
PHLF*

mRNA from alignment at tig00000088_pilon:835962..837176+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8632.t1 ID=Gchil8632.t1|Name=Gchil8632.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1215bp|location=Sequence derived from alignment at tig00000088_pilon:835962..837176+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTGTCGTCGACTTTGATGACCATGTCACGCCGGCCGAGTTGCCGCC
GTCGCCGCACAGGCTGCCCACTCCGCCCGAGCGCGTCGTGTCGCCGCCCG
TTAAGCCCAACCTCTTCGCCATCATCAAGGACGCCCTCACCAAGGACATC
ACGCGCATGACCATCCCCGTGCATTTCAACGAGCCCCTGTCCTTCTTGCA
GCGTCTCGCAGAGGATGTCGAGTACCACAGCCTGCTCGACGTCGCCGCCC
ACCCGCGCTACGCGCGCACCCCGCACCGTGCCGCTCTCGTCGCCGCCTTT
GTCATCAGTCAGTACTCGTCTACGTCCGCTCGCACCTCCAAGCCCTTCAA
TCCCTTGCTCGGGGAGACCTTCGAACTCGTGCTTCCCCAACGCGGCCTTG
TCCTTGTGGCGGAGCAGGTCTCACATCACCCCCCTGTCTCCGCCCTCTTT
ACAAAGGGAAACGGGTGGACCTATCACACTGCCCATCGCGTGCGTAACAA
GTTCCTCGTCAATGCCATGGAGGCCTGGCCGGAGGGTGCCGTTCACATCT
GCTTCGATGACGGCGACCATTTTGTGTACGAAAAGCCCCACACTTTCGTC
AACAACCTCTTTTTCGGCAACATGTGGATTGATAGTGCTGGCGCAGTCAC
CATTCGCAACCGCCACTTCATCGCCTCTCTTCATATGAAGCGCGCGTGCA
CCGTGCCTTTCCGCGAGGGAAAGGGCCTTGGAAACACTGTTGGCTCCGTG
TTTTCAGCCATGGACAAGAGCAAGAAGCCTCTATGCAACATTGTCGGAAA
TTGGACCTCTCACGTTCTAGTCGATGGTAAGGAGGTTTGGAAAGTCTCCC
CTAAGCCCCCTTCATCCTATACCGCGTCCAGTTCTTTAACAGCCTGGGCT
TGGTCCCTCAATGCACCTCCGCACCCTCCAAGCGTGTCCCTTCCGAGCAC
CGACTCTCGCCACCGCCCGGACCAACGCGCTCTTGAGAGTGGAAACCATC
GTCTGGCTAGCTCTGAAAAGGCTCGATTGGAAGAGGCGCAGAGGGAGAGA
AGGCAAACCATGGAGCGAGAAGGAAAACATTTCCAGCCGCGCTGGTTTGA
ATCTTATCATGACCCTGATACTGGACGCAAACAGTGGAGGTACACGGGAC
AATACTTTCGCCGAAAGAGCGATGCGATTGAGACATGGCCTCACCAAAGC
CCACATCTCTTCTAG

Coding sequence (CDS) from alignment at tig00000088_pilon:835962..837176+

>Gchil8632.t1 ID=Gchil8632.t1|Name=Gchil8632.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1215bp|location=Sequence derived from alignment at tig00000088_pilon:835962..837176+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTGTCGTCGACTTTGATGACCATGTCACGCCGGCCGAGTTGCCGCC
GTCGCCGCACAGGCTGCCCACTCCGCCCGAGCGCGTCGTGTCGCCGCCCG
TTAAGCCCAACCTCTTCGCCATCATCAAGGACGCCCTCACCAAGGACATC
ACGCGCATGACCATCCCCGTGCATTTCAACGAGCCCCTGTCCTTCTTGCA
GCGTCTCGCAGAGGATGTCGAGTACCACAGCCTGCTCGACGTCGCCGCCC
ACCCGCGCTACGCGCGCACCCCGCACCGTGCCGCTCTCGTCGCCGCCTTT
GTCATCAGTCAGTACTCGTCTACGTCCGCTCGCACCTCCAAGCCCTTCAA
TCCCTTGCTCGGGGAGACCTTCGAACTCGTGCTTCCCCAACGCGGCCTTG
TCCTTGTGGCGGAGCAGGTCTCACATCACCCCCCTGTCTCCGCCCTCTTT
ACAAAGGGAAACGGGTGGACCTATCACACTGCCCATCGCGTGCGTAACAA
GTTCCTCGTCAATGCCATGGAGGCCTGGCCGGAGGGTGCCGTTCACATCT
GCTTCGATGACGGCGACCATTTTGTGTACGAAAAGCCCCACACTTTCGTC
AACAACCTCTTTTTCGGCAACATGTGGATTGATAGTGCTGGCGCAGTCAC
CATTCGCAACCGCCACTTCATCGCCTCTCTTCATATGAAGCGCGCGTGCA
CCGTGCCTTTCCGCGAGGGAAAGGGCCTTGGAAACACTGTTGGCTCCGTG
TTTTCAGCCATGGACAAGAGCAAGAAGCCTCTATGCAACATTGTCGGAAA
TTGGACCTCTCACGTTCTAGTCGATGGTAAGGAGGTTTGGAAAGTCTCCC
CTAAGCCCCCTTCATCCTATACCGCGTCCAGTTCTTTAACAGCCTGGGCT
TGGTCCCTCAATGCACCTCCGCACCCTCCAAGCGTGTCCCTTCCGAGCAC
CGACTCTCGCCACCGCCCGGACCAACGCGCTCTTGAGAGTGGAAACCATC
GTCTGGCTAGCTCTGAAAAGGCTCGATTGGAAGAGGCGCAGAGGGAGAGA
AGGCAAACCATGGAGCGAGAAGGAAAACATTTCCAGCCGCGCTGGTTTGA
ATCTTATCATGACCCTGATACTGGACGCAAACAGTGGAGGTACACGGGAC
AATACTTTCGCCGAAAGAGCGATGCGATTGAGACATGGCCTCACCAAAGC
CCACATCTCTTCTAG