Gchil8631.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8631.t1
Unique NameGchil8631.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length108
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:834939..835909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121930.AQXG01000001_gene1222
PFAMsHc1
Max annot lvl976|Bacteroidetes
Evalue9.43e-13
EggNOG OGs2BVK8@1|root,32Y0S@2|Bacteria,4NUUA@976|Bacteroidetes,1ITXR@117747|Sphingobacteriia
Descriptionhistone H1-like protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8631Gchil8631Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 834939..835909 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8631.t1Gchil8631.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 834939..835909 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8631.t1.stop1Gchil8631.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 834939..834941 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8631.t1.CDS1Gchil8631.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 834939..835144 -
Gchil8631.t1.CDS2Gchil8631.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 835216..835293 -
Gchil8631.t1.CDS3Gchil8631.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 835490..835502 -
Gchil8631.t1.CDS4Gchil8631.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 835883..835909 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8631.t1.exon1Gchil8631.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 834939..835144 -
Gchil8631.t1.exon2Gchil8631.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 835216..835293 -
Gchil8631.t1.exon3Gchil8631.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 835490..835502 -
Gchil8631.t1.exon4Gchil8631.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 835883..835909 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8631.t1.intron1Gchil8631.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000088_pilon 835145..835215 -
Gchil8631.t1.intron2Gchil8631.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000088_pilon 835294..835489 -
Gchil8631.t1.intron3Gchil8631.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00000088_pilon 835503..835882 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8631.t1.start1Gchil8631.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 835907..835909 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8631.t1 ID=Gchil8631.t1|Name=Gchil8631.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=108bp
MAESGRGATPCVPAVRLRRAPLCSALRSLFSLVVPAAALAHVTMEKLQQL
KEVMDAVSKDSTKFFEKGNKAAGTRARKNLQELKKLAQELRVAIQDTKAN
MANPVAE*
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spliced messenger RNA

>Gchil8631.t1 ID=Gchil8631.t1|Name=Gchil8631.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=324bp|location=Sequence derived from alignment at tig00000088_pilon:834939..835909- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGAATCGGGCAGAGGAGCAACACCCTGCGTGCCCGCCGTCCGTCT
TCGTCGTGCGCCTCTCTGTAGCGCTCTTCGCTCTTTGTTTTCGCTCGTCG
TCCCCGCCGCTGCTCTCGCCCACGTCACTATGGAAAAGCTTCAGCAGCTC
AAGGAGGTTATGGACGCTGTCTCCAAGGACAGCACCAAGTTCTTCGAAAA
GGGTAATAAGGCCGCCGGCACTCGTGCCCGCAAGAACTTGCAGGAGCTCA
AGAAGCTGGCGCAAGAGCTTCGTGTCGCAATACAAGACACCAAGGCAAAC
ATGGCCAACCCCGTCGCCGAGTGA
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protein sequence of Gchil8631.t1

>Gchil8631.t1 ID=Gchil8631.t1|Name=Gchil8631.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=108bp
MAESGRGATPCVPAVRLRRAPLCSALRSLFSLVVPAAALAHVTMEKLQQL
KEVMDAVSKDSTKFFEKGNKAAGTRARKNLQELKKLAQELRVAIQDTKAN
MANPVAE*
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mRNA from alignment at tig00000088_pilon:834939..835909-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8631.t1 ID=Gchil8631.t1|Name=Gchil8631.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=971bp|location=Sequence derived from alignment at tig00000088_pilon:834939..835909- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGAATCGGGCAGAGGAGCAACAGTCTAAACTGCGCGCAGCATCAC
AAGCTCCAGCGCCGTGCTGCGAAGCGCGTGGCGCATGCATTAACGTGTCA
CACCGACACGTGTCACAGTGCCACGCGTGATTGCAGATATTCCACGTGTC
CAACGGAACACGGATGCCACGCGGGGGGGGGGGGAACCACACGGACAGAC
CAATGAGCAGCGGCGAGAGAGCAGCGACGGCGGCGGGGAAGCGCGCAGCA
GAGCGGGGTTGGGGGGCGGGCGACTCGCGCGCGCTGCGGCGCGCAGCTCA
AAGCAGCGCGCGACGCGCCCCACAGCACACACCTGCATTGCAACCACCGC
CGCCCACGTCCGCTGCACAGCCGCTCCCCCCCCCCCCCCCCCCCCCCACA
CACACAGCCCTGCGTGCCCGGTAAGTTTGCATAGCGCTCCAAATAAAACG
GCCGTTTGCGTGTCGCGTGTCGCGCTGTGCCTTGTGCGCGCGCTCCTTGG
TGTTGTTTCGCTTCGTCGCTGACCTGTGTGTTGCCCTTGTGCTTGGCGCT
ATGCTGCCTTGTCGCTTACCCGCCGTGACTGCTTGCGTTCCACGTCTGTT
GTGTACCGTGTTTTAGCCGTCCGTCTTCGTCGTGCGCCTCTCTGTAGCGC
TCTTCGCTCTTTGTTTTCGCTCGTCGTCCCCGCCGCTGCTCTCGGTGCTC
CCGCGCACCGCCCGCCTCTCGCATCTTCACCGCCTCGTTGCCCGGCCCTT
CTCGCACGTCGTCAGCCCACGTCACTATGGAAAAGCTTCAGCAGCTCAAG
GAGGTTATGGACGCTGTCTCCAAGGACAGCACCAAGTTCTTCGAAAAGGG
TAATAAGGCCGCCGGCACTCGTGCCCGCAAGAACTTGCAGGAGCTCAAGA
AGCTGGCGCAAGAGCTTCGTGTCGCAATACAAGACACCAAGGCAAACATG
GCCAACCCCGTCGCCGAGTGA
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Coding sequence (CDS) from alignment at tig00000088_pilon:834939..835909-

>Gchil8631.t1 ID=Gchil8631.t1|Name=Gchil8631.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=324bp|location=Sequence derived from alignment at tig00000088_pilon:834939..835909- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGAATCGGGCAGAGGAGCAACACCCTGCGTGCCCGCCGTCCGTCT
TCGTCGTGCGCCTCTCTGTAGCGCTCTTCGCTCTTTGTTTTCGCTCGTCG
TCCCCGCCGCTGCTCTCGCCCACGTCACTATGGAAAAGCTTCAGCAGCTC
AAGGAGGTTATGGACGCTGTCTCCAAGGACAGCACCAAGTTCTTCGAAAA
GGGTAATAAGGCCGCCGGCACTCGTGCCCGCAAGAACTTGCAGGAGCTCA
AGAAGCTGGCGCAAGAGCTTCGTGTCGCAATACAAGACACCAAGGCAAAC
ATGGCCAACCCCGTCGCCGAGTGA
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