Gchil8627.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8627.t1
Unique NameGchil8627.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length439
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:773169..774485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005650343.1
PFAMsERG4_ERG24
Max annot lvl3041|Chlorophyta
KEGG rclassRC00138
KEGG koko:K00213
KEGG ReactionR01451,R01456,R07487,R07492
KEGG Pathwayko00100,ko01100,ko01110,map00100,map01100,map01110
KEGG ModuleM00101
Evalue1.62e-119
EggNOG OGsKOG1435@1|root,KOG1435@2759|Eukaryota,37JPF@33090|Viridiplantae,34P3S@3041|Chlorophyta
EC1.3.1.21
DescriptionErgosterol biosynthesis ERG4/ERG24 family
COG categoryIT
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8627Gchil8627Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 773169..774485 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8627.t1.stop1Gchil8627.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 773169..773171 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8627.t1.CDS1Gchil8627.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 773169..774485 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8627.t1.exon1Gchil8627.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 773169..774485 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8627.t1.start1Gchil8627.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 774483..774485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8627.t1Gchil8627.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 773169..774485 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8627.t1 ID=Gchil8627.t1|Name=Gchil8627.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=439bp
MSKNDAESSPTKSVAAFFRTTFVPVALMLISPPAVQLVWVICYHYDGNAL
LALLFSPIDQILSNFPHVTAQTGAIVLAFLFMQALLLRLVPATTFVAIPT
PMGNRPTYRLNGVRCFIITHALILTAYAFGLFSFVHFYHVFGEILAFLNA
FALAATVFLYVRGLYFPTNSDSGKSGHGFVWDMWQGTELHPEMFEMSLKQ
LINCRFAMMGWSVAVVAFAMSQYETIGYVSNSMFVSAFLQTVYIFKFFVW
EAGYFNSVDIIHDRFGFYIFWGCSAFLPSIYTLTSYFLTTHAVQWPVWGA
VATGVSGLAALGCNYWTDYQRQMFRAANGECKVWGRAPRIIEATYTTGDG
KRRRSVLLASGWWGVARHINYVFEITLALCWSLPAARSGVMPYVYVSFLT
ILLTDRAYRDELRCAAKYGSFYDEYCRLVPWRMIPGVY*
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spliced messenger RNA

>Gchil8627.t1 ID=Gchil8627.t1|Name=Gchil8627.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1317bp|location=Sequence derived from alignment at tig00000088_pilon:773169..774485- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAAAAATGACGCTGAATCCTCCCCGACCAAATCGGTAGCCGCCTT
TTTCCGCACCACATTTGTTCCAGTGGCGCTTATGCTCATTTCACCTCCTG
CGGTGCAGCTAGTGTGGGTCATTTGCTATCACTATGATGGAAATGCTTTG
CTCGCGCTGTTATTCAGCCCAATTGATCAAATTCTCTCCAACTTTCCGCA
CGTCACTGCGCAAACTGGCGCCATAGTTTTAGCGTTTCTTTTCATGCAAG
CTTTGCTGTTGAGATTGGTGCCGGCCACCACGTTTGTGGCCATTCCGACG
CCGATGGGGAATCGCCCTACTTATCGATTGAATGGTGTGAGATGTTTTAT
TATTACACACGCGTTGATTTTGACCGCGTATGCCTTTGGTTTATTCTCCT
TCGTGCATTTTTATCATGTATTTGGCGAAATTCTTGCGTTTCTTAATGCT
TTTGCTTTGGCAGCGACAGTTTTCTTGTACGTTCGTGGACTGTACTTTCC
GACCAACTCCGATTCGGGAAAGAGTGGGCATGGGTTTGTTTGGGATATGT
GGCAGGGCACGGAATTGCATCCAGAAATGTTCGAGATGAGTCTCAAGCAG
CTCATCAACTGTCGTTTCGCCATGATGGGGTGGAGTGTGGCCGTGGTGGC
GTTTGCCATGAGTCAATACGAGACAATCGGCTACGTGTCGAATTCTATGT
TCGTGTCTGCATTTTTGCAAACTGTGTACATTTTCAAGTTCTTTGTGTGG
GAGGCAGGTTACTTCAATTCTGTGGACATCATCCATGATCGCTTCGGTTT
CTACATTTTCTGGGGCTGCTCGGCGTTTCTACCAAGTATCTACACGCTGA
CGTCGTACTTCCTCACGACGCACGCGGTGCAATGGCCCGTGTGGGGCGCG
GTGGCAACTGGTGTAAGCGGGTTGGCGGCGTTGGGTTGCAATTACTGGAC
CGATTACCAACGGCAGATGTTCCGCGCGGCAAACGGAGAGTGCAAGGTGT
GGGGTCGGGCGCCGAGAATTATTGAGGCGACGTACACGACTGGAGATGGA
AAGCGTCGACGCAGCGTGCTGCTGGCCAGCGGGTGGTGGGGCGTTGCGCG
TCACATCAACTACGTGTTCGAAATCACGCTGGCTCTGTGCTGGAGCTTAC
CGGCGGCGCGAAGCGGGGTGATGCCGTACGTGTACGTGAGCTTCCTGACG
ATCCTGCTGACGGATCGGGCGTATCGTGACGAGCTACGATGTGCGGCAAA
GTATGGTAGCTTCTACGACGAGTACTGCCGGCTGGTGCCATGGAGGATGA
TCCCCGGTGTGTATTGA
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protein sequence of Gchil8627.t1

>Gchil8627.t1 ID=Gchil8627.t1|Name=Gchil8627.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=439bp
MSKNDAESSPTKSVAAFFRTTFVPVALMLISPPAVQLVWVICYHYDGNAL
LALLFSPIDQILSNFPHVTAQTGAIVLAFLFMQALLLRLVPATTFVAIPT
PMGNRPTYRLNGVRCFIITHALILTAYAFGLFSFVHFYHVFGEILAFLNA
FALAATVFLYVRGLYFPTNSDSGKSGHGFVWDMWQGTELHPEMFEMSLKQ
LINCRFAMMGWSVAVVAFAMSQYETIGYVSNSMFVSAFLQTVYIFKFFVW
EAGYFNSVDIIHDRFGFYIFWGCSAFLPSIYTLTSYFLTTHAVQWPVWGA
VATGVSGLAALGCNYWTDYQRQMFRAANGECKVWGRAPRIIEATYTTGDG
KRRRSVLLASGWWGVARHINYVFEITLALCWSLPAARSGVMPYVYVSFLT
ILLTDRAYRDELRCAAKYGSFYDEYCRLVPWRMIPGVY*
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mRNA from alignment at tig00000088_pilon:773169..774485-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8627.t1 ID=Gchil8627.t1|Name=Gchil8627.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1317bp|location=Sequence derived from alignment at tig00000088_pilon:773169..774485- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCAAAAATGACGCTGAATCCTCCCCGACCAAATCGGTAGCCGCCTT
TTTCCGCACCACATTTGTTCCAGTGGCGCTTATGCTCATTTCACCTCCTG
CGGTGCAGCTAGTGTGGGTCATTTGCTATCACTATGATGGAAATGCTTTG
CTCGCGCTGTTATTCAGCCCAATTGATCAAATTCTCTCCAACTTTCCGCA
CGTCACTGCGCAAACTGGCGCCATAGTTTTAGCGTTTCTTTTCATGCAAG
CTTTGCTGTTGAGATTGGTGCCGGCCACCACGTTTGTGGCCATTCCGACG
CCGATGGGGAATCGCCCTACTTATCGATTGAATGGTGTGAGATGTTTTAT
TATTACACACGCGTTGATTTTGACCGCGTATGCCTTTGGTTTATTCTCCT
TCGTGCATTTTTATCATGTATTTGGCGAAATTCTTGCGTTTCTTAATGCT
TTTGCTTTGGCAGCGACAGTTTTCTTGTACGTTCGTGGACTGTACTTTCC
GACCAACTCCGATTCGGGAAAGAGTGGGCATGGGTTTGTTTGGGATATGT
GGCAGGGCACGGAATTGCATCCAGAAATGTTCGAGATGAGTCTCAAGCAG
CTCATCAACTGTCGTTTCGCCATGATGGGGTGGAGTGTGGCCGTGGTGGC
GTTTGCCATGAGTCAATACGAGACAATCGGCTACGTGTCGAATTCTATGT
TCGTGTCTGCATTTTTGCAAACTGTGTACATTTTCAAGTTCTTTGTGTGG
GAGGCAGGTTACTTCAATTCTGTGGACATCATCCATGATCGCTTCGGTTT
CTACATTTTCTGGGGCTGCTCGGCGTTTCTACCAAGTATCTACACGCTGA
CGTCGTACTTCCTCACGACGCACGCGGTGCAATGGCCCGTGTGGGGCGCG
GTGGCAACTGGTGTAAGCGGGTTGGCGGCGTTGGGTTGCAATTACTGGAC
CGATTACCAACGGCAGATGTTCCGCGCGGCAAACGGAGAGTGCAAGGTGT
GGGGTCGGGCGCCGAGAATTATTGAGGCGACGTACACGACTGGAGATGGA
AAGCGTCGACGCAGCGTGCTGCTGGCCAGCGGGTGGTGGGGCGTTGCGCG
TCACATCAACTACGTGTTCGAAATCACGCTGGCTCTGTGCTGGAGCTTAC
CGGCGGCGCGAAGCGGGGTGATGCCGTACGTGTACGTGAGCTTCCTGACG
ATCCTGCTGACGGATCGGGCGTATCGTGACGAGCTACGATGTGCGGCAAA
GTATGGTAGCTTCTACGACGAGTACTGCCGGCTGGTGCCATGGAGGATGA
TCCCCGGTGTGTATTGA
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Coding sequence (CDS) from alignment at tig00000088_pilon:773169..774485-

>Gchil8627.t1 ID=Gchil8627.t1|Name=Gchil8627.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1317bp|location=Sequence derived from alignment at tig00000088_pilon:773169..774485- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCAAAAATGACGCTGAATCCTCCCCGACCAAATCGGTAGCCGCCTT
TTTCCGCACCACATTTGTTCCAGTGGCGCTTATGCTCATTTCACCTCCTG
CGGTGCAGCTAGTGTGGGTCATTTGCTATCACTATGATGGAAATGCTTTG
CTCGCGCTGTTATTCAGCCCAATTGATCAAATTCTCTCCAACTTTCCGCA
CGTCACTGCGCAAACTGGCGCCATAGTTTTAGCGTTTCTTTTCATGCAAG
CTTTGCTGTTGAGATTGGTGCCGGCCACCACGTTTGTGGCCATTCCGACG
CCGATGGGGAATCGCCCTACTTATCGATTGAATGGTGTGAGATGTTTTAT
TATTACACACGCGTTGATTTTGACCGCGTATGCCTTTGGTTTATTCTCCT
TCGTGCATTTTTATCATGTATTTGGCGAAATTCTTGCGTTTCTTAATGCT
TTTGCTTTGGCAGCGACAGTTTTCTTGTACGTTCGTGGACTGTACTTTCC
GACCAACTCCGATTCGGGAAAGAGTGGGCATGGGTTTGTTTGGGATATGT
GGCAGGGCACGGAATTGCATCCAGAAATGTTCGAGATGAGTCTCAAGCAG
CTCATCAACTGTCGTTTCGCCATGATGGGGTGGAGTGTGGCCGTGGTGGC
GTTTGCCATGAGTCAATACGAGACAATCGGCTACGTGTCGAATTCTATGT
TCGTGTCTGCATTTTTGCAAACTGTGTACATTTTCAAGTTCTTTGTGTGG
GAGGCAGGTTACTTCAATTCTGTGGACATCATCCATGATCGCTTCGGTTT
CTACATTTTCTGGGGCTGCTCGGCGTTTCTACCAAGTATCTACACGCTGA
CGTCGTACTTCCTCACGACGCACGCGGTGCAATGGCCCGTGTGGGGCGCG
GTGGCAACTGGTGTAAGCGGGTTGGCGGCGTTGGGTTGCAATTACTGGAC
CGATTACCAACGGCAGATGTTCCGCGCGGCAAACGGAGAGTGCAAGGTGT
GGGGTCGGGCGCCGAGAATTATTGAGGCGACGTACACGACTGGAGATGGA
AAGCGTCGACGCAGCGTGCTGCTGGCCAGCGGGTGGTGGGGCGTTGCGCG
TCACATCAACTACGTGTTCGAAATCACGCTGGCTCTGTGCTGGAGCTTAC
CGGCGGCGCGAAGCGGGGTGATGCCGTACGTGTACGTGAGCTTCCTGACG
ATCCTGCTGACGGATCGGGCGTATCGTGACGAGCTACGATGTGCGGCAAA
GTATGGTAGCTTCTACGACGAGTACTGCCGGCTGGTGCCATGGAGGATGA
TCCCCGGTGTGTATTGA
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