Gchil8620.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8620.t1
Unique Name	Gchil8620.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	182

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:629322..629867 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707395.1
Preferred name	MCTS1
PFAMs	PUA
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02883,ko:K07575
KEGG Pathway	ko03010,map03010
KEGG Module	M00177,M00179
GOs	GO:0001731,GO:0002181,GO:0002183,GO:0002188,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008284,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0016020,GO:0016032,GO:0016043,GO:0019080,GO:0019081,GO:0019222,GO:0019538,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032790,GO:0032984,GO:0032988,GO:0032991,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0042127,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045727,GO:0045948,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0075522,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008,GO:1990904,GO:2000112
Evalue	1.02e-54
EggNOG OGs	COG2016@1\|root,KOG2523@2759\|Eukaryota
Description	formation of translation preinitiation complex
COG category	J
BRITE	br01610,ko00000,ko00001,ko00002,ko03011

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8620	Gchil8620	Gracilaria chilensis NLEC103_M9 male	gene	tig00000088_pilon 629322..629867 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8620.t1.stop1	Gchil8620.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000088_pilon 629322..629324 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8620.t1.CDS1	Gchil8620.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000088_pilon 629322..629867 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8620.t1.exon1	Gchil8620.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000088_pilon 629322..629867 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8620.t1.start1	Gchil8620.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000088_pilon 629865..629867 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8620.t1	Gchil8620.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000088_pilon 629322..629867 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000088_pilon:629322..629867-
coding sequence from alignment at tig00000088_pilon:629322..629867-

mRNA sequence

>Gchil8620.t1 ID=Gchil8620.t1|Name=Gchil8620.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=182bp
MFKRFSPESASGQSAMKSSQQRAARANIIRQMPSIQPYSEHFFPKKEKTI
LVKCAGHLSVLCNANGNPMFFQTRNGEYFPTLRTLHKYPFLLPSLRVDRG
AIKHVINGADVMVPGLRSERAVIESEVEAGTAVAVFADTKQHPIAVGIAR
MSSAQMRATDKGIAVENVHFVSDCLWKCAQL*

spliced messenger RNA

>Gchil8620.t1 ID=Gchil8620.t1|Name=Gchil8620.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=546bp|location=Sequence derived from alignment at tig00000088_pilon:629322..629867- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCAAGCGCTTCTCCCCCGAAAGCGCCTCCGGGCAGTCGGCCATGAA
GTCGTCGCAGCAGCGCGCGGCGCGCGCAAATATCATTCGTCAAATGCCGT
CTATCCAGCCGTATAGCGAGCATTTCTTTCCCAAGAAGGAAAAGACCATC
CTCGTCAAGTGTGCCGGTCATTTGTCCGTGCTATGCAACGCAAACGGAAA
CCCCATGTTCTTCCAGACCAGGAATGGTGAATACTTCCCTACGCTGCGCA
CGCTGCACAAATATCCCTTCCTACTGCCGTCGCTTCGCGTCGATCGCGGC
GCCATCAAACATGTCATCAACGGCGCCGATGTTATGGTTCCGGGGCTTCG
CTCCGAGCGCGCCGTCATTGAGAGCGAGGTTGAGGCCGGCACCGCCGTTG
CCGTCTTCGCTGACACCAAGCAACACCCCATTGCTGTCGGTATTGCGCGC
ATGTCATCTGCGCAGATGAGAGCTACCGACAAGGGAATTGCCGTGGAGAA
TGTTCACTTTGTTTCGGACTGCCTGTGGAAATGTGCGCAGCTTTGA

protein sequence of Gchil8620.t1

>Gchil8620.t1 ID=Gchil8620.t1|Name=Gchil8620.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=182bp
MFKRFSPESASGQSAMKSSQQRAARANIIRQMPSIQPYSEHFFPKKEKTI
LVKCAGHLSVLCNANGNPMFFQTRNGEYFPTLRTLHKYPFLLPSLRVDRG
AIKHVINGADVMVPGLRSERAVIESEVEAGTAVAVFADTKQHPIAVGIAR
MSSAQMRATDKGIAVENVHFVSDCLWKCAQL*

mRNA from alignment at tig00000088_pilon:629322..629867-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8620.t1 ID=Gchil8620.t1|Name=Gchil8620.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=546bp|location=Sequence derived from alignment at tig00000088_pilon:629322..629867- (Gracilaria chilensis NLEC103_M9 male)
ATGTTCAAGCGCTTCTCCCCCGAAAGCGCCTCCGGGCAGTCGGCCATGAA
GTCGTCGCAGCAGCGCGCGGCGCGCGCAAATATCATTCGTCAAATGCCGT
CTATCCAGCCGTATAGCGAGCATTTCTTTCCCAAGAAGGAAAAGACCATC
CTCGTCAAGTGTGCCGGTCATTTGTCCGTGCTATGCAACGCAAACGGAAA
CCCCATGTTCTTCCAGACCAGGAATGGTGAATACTTCCCTACGCTGCGCA
CGCTGCACAAATATCCCTTCCTACTGCCGTCGCTTCGCGTCGATCGCGGC
GCCATCAAACATGTCATCAACGGCGCCGATGTTATGGTTCCGGGGCTTCG
CTCCGAGCGCGCCGTCATTGAGAGCGAGGTTGAGGCCGGCACCGCCGTTG
CCGTCTTCGCTGACACCAAGCAACACCCCATTGCTGTCGGTATTGCGCGC
ATGTCATCTGCGCAGATGAGAGCTACCGACAAGGGAATTGCCGTGGAGAA
TGTTCACTTTGTTTCGGACTGCCTGTGGAAATGTGCGCAGCTTTGA

Coding sequence (CDS) from alignment at tig00000088_pilon:629322..629867-

>Gchil8620.t1 ID=Gchil8620.t1|Name=Gchil8620.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=546bp|location=Sequence derived from alignment at tig00000088_pilon:629322..629867- (Gracilaria chilensis NLEC103_M9 male)
ATGTTCAAGCGCTTCTCCCCCGAAAGCGCCTCCGGGCAGTCGGCCATGAA
GTCGTCGCAGCAGCGCGCGGCGCGCGCAAATATCATTCGTCAAATGCCGT
CTATCCAGCCGTATAGCGAGCATTTCTTTCCCAAGAAGGAAAAGACCATC
CTCGTCAAGTGTGCCGGTCATTTGTCCGTGCTATGCAACGCAAACGGAAA
CCCCATGTTCTTCCAGACCAGGAATGGTGAATACTTCCCTACGCTGCGCA
CGCTGCACAAATATCCCTTCCTACTGCCGTCGCTTCGCGTCGATCGCGGC
GCCATCAAACATGTCATCAACGGCGCCGATGTTATGGTTCCGGGGCTTCG
CTCCGAGCGCGCCGTCATTGAGAGCGAGGTTGAGGCCGGCACCGCCGTTG
CCGTCTTCGCTGACACCAAGCAACACCCCATTGCTGTCGGTATTGCGCGC
ATGTCATCTGCGCAGATGAGAGCTACCGACAAGGGAATTGCCGTGGAGAA
TGTTCACTTTGTTTCGGACTGCCTGTGGAAATGTGCGCAGCTTTGA