Gchil8619.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8619.t1
Unique Name	Gchil8619.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	298

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:627617..628510 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704052.1
Max annot lvl	2759\|Eukaryota
Evalue	7.87e-21
EggNOG OGs	28PNT@1\|root,2QWAW@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8619	Gchil8619	Gracilaria chilensis NLEC103_M9 male	gene	tig00000088_pilon 627617..628510 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8619.t1.start1	Gchil8619.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000088_pilon 627617..627619 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8619.t1.CDS1	Gchil8619.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000088_pilon 627617..628510 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8619.t1.exon1	Gchil8619.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000088_pilon 627617..628510 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8619.t1.stop1	Gchil8619.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000088_pilon 628508..628510 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8619.t1	Gchil8619.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000088_pilon 627617..628510 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000088_pilon:627617..628510+
coding sequence from alignment at tig00000088_pilon:627617..628510+

mRNA sequence

>Gchil8619.t1 ID=Gchil8619.t1|Name=Gchil8619.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=298bp
MFPSLLRRLRSIISPATAATGRSLQLQLDSKRLCGVLPDKNLKDAPPEAQ
AQALNAHLTRQVYQTLHATHGALIDASSKPICELVQSRLGYVPVIARSSI
ADAGNGLFISGTAPAGCMVALFPGLFYKPSELPEHISDLAISRYDGVIVD
SSHDVCINVTLADDEKELYHPFGTAHYANHGPPNTLQFLLDIQANSLPSH
VRGLIPVQEAVTSSIPLFSGWADLAARQRVPGVGLYTKEGKNVLRTVALM
ALRDIDNDEEVLFNYRFNPKVCLPDWYKDPEPDISERRWHTSSGMLF*

spliced messenger RNA

>Gchil8619.t1 ID=Gchil8619.t1|Name=Gchil8619.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00000088_pilon:627617..628510+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCCAAGTCTCCTGCGCCGTTTACGCTCAATAATCTCCCCAGCTAC
AGCCGCAACAGGGCGGTCCCTCCAGCTTCAACTAGACTCCAAACGCCTCT
GTGGCGTCCTTCCCGACAAAAACCTGAAGGATGCGCCACCAGAAGCACAG
GCGCAAGCGCTGAACGCGCATCTCACAAGGCAAGTGTATCAGACTCTCCA
TGCAACGCATGGCGCGCTGATTGACGCTTCATCGAAGCCAATTTGTGAAC
TTGTACAATCCAGGTTGGGTTACGTTCCTGTGATCGCACGCTCGTCAATC
GCGGACGCTGGGAATGGACTGTTTATATCAGGAACAGCGCCAGCAGGCTG
TATGGTGGCACTGTTCCCTGGTTTATTCTACAAGCCGAGTGAACTCCCAG
AGCACATATCTGATCTAGCCATTTCTCGTTATGACGGCGTGATTGTTGAT
TCTTCGCATGATGTTTGTATAAACGTCACGTTGGCGGATGATGAGAAAGA
GCTGTACCATCCTTTCGGCACGGCGCATTATGCAAACCATGGTCCGCCAA
ACACTCTACAATTCCTGCTTGATATACAGGCCAACAGTTTGCCGAGCCAC
GTTCGTGGTCTGATCCCCGTGCAAGAGGCGGTGACGTCAAGCATACCGTT
GTTCAGTGGGTGGGCAGATCTGGCAGCTCGGCAGCGTGTTCCAGGGGTGG
GGTTATACACAAAAGAGGGCAAGAATGTGCTACGAACGGTAGCGTTAATG
GCACTGCGCGACATTGACAATGACGAGGAAGTGCTTTTTAATTACCGTTT
CAATCCGAAGGTATGCTTGCCAGACTGGTATAAAGATCCAGAGCCGGATA
TCTCCGAAAGACGTTGGCACACGTCTTCTGGGATGTTGTTTTGA

protein sequence of Gchil8619.t1

>Gchil8619.t1 ID=Gchil8619.t1|Name=Gchil8619.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=298bp
MFPSLLRRLRSIISPATAATGRSLQLQLDSKRLCGVLPDKNLKDAPPEAQ
AQALNAHLTRQVYQTLHATHGALIDASSKPICELVQSRLGYVPVIARSSI
ADAGNGLFISGTAPAGCMVALFPGLFYKPSELPEHISDLAISRYDGVIVD
SSHDVCINVTLADDEKELYHPFGTAHYANHGPPNTLQFLLDIQANSLPSH
VRGLIPVQEAVTSSIPLFSGWADLAARQRVPGVGLYTKEGKNVLRTVALM
ALRDIDNDEEVLFNYRFNPKVCLPDWYKDPEPDISERRWHTSSGMLF*

mRNA from alignment at tig00000088_pilon:627617..628510+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8619.t1 ID=Gchil8619.t1|Name=Gchil8619.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00000088_pilon:627617..628510+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTCCCAAGTCTCCTGCGCCGTTTACGCTCAATAATCTCCCCAGCTAC
AGCCGCAACAGGGCGGTCCCTCCAGCTTCAACTAGACTCCAAACGCCTCT
GTGGCGTCCTTCCCGACAAAAACCTGAAGGATGCGCCACCAGAAGCACAG
GCGCAAGCGCTGAACGCGCATCTCACAAGGCAAGTGTATCAGACTCTCCA
TGCAACGCATGGCGCGCTGATTGACGCTTCATCGAAGCCAATTTGTGAAC
TTGTACAATCCAGGTTGGGTTACGTTCCTGTGATCGCACGCTCGTCAATC
GCGGACGCTGGGAATGGACTGTTTATATCAGGAACAGCGCCAGCAGGCTG
TATGGTGGCACTGTTCCCTGGTTTATTCTACAAGCCGAGTGAACTCCCAG
AGCACATATCTGATCTAGCCATTTCTCGTTATGACGGCGTGATTGTTGAT
TCTTCGCATGATGTTTGTATAAACGTCACGTTGGCGGATGATGAGAAAGA
GCTGTACCATCCTTTCGGCACGGCGCATTATGCAAACCATGGTCCGCCAA
ACACTCTACAATTCCTGCTTGATATACAGGCCAACAGTTTGCCGAGCCAC
GTTCGTGGTCTGATCCCCGTGCAAGAGGCGGTGACGTCAAGCATACCGTT
GTTCAGTGGGTGGGCAGATCTGGCAGCTCGGCAGCGTGTTCCAGGGGTGG
GGTTATACACAAAAGAGGGCAAGAATGTGCTACGAACGGTAGCGTTAATG
GCACTGCGCGACATTGACAATGACGAGGAAGTGCTTTTTAATTACCGTTT
CAATCCGAAGGTATGCTTGCCAGACTGGTATAAAGATCCAGAGCCGGATA
TCTCCGAAAGACGTTGGCACACGTCTTCTGGGATGTTGTTTTGA

Coding sequence (CDS) from alignment at tig00000088_pilon:627617..628510+

>Gchil8619.t1 ID=Gchil8619.t1|Name=Gchil8619.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=894bp|location=Sequence derived from alignment at tig00000088_pilon:627617..628510+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTCCCAAGTCTCCTGCGCCGTTTACGCTCAATAATCTCCCCAGCTAC
AGCCGCAACAGGGCGGTCCCTCCAGCTTCAACTAGACTCCAAACGCCTCT
GTGGCGTCCTTCCCGACAAAAACCTGAAGGATGCGCCACCAGAAGCACAG
GCGCAAGCGCTGAACGCGCATCTCACAAGGCAAGTGTATCAGACTCTCCA
TGCAACGCATGGCGCGCTGATTGACGCTTCATCGAAGCCAATTTGTGAAC
TTGTACAATCCAGGTTGGGTTACGTTCCTGTGATCGCACGCTCGTCAATC
GCGGACGCTGGGAATGGACTGTTTATATCAGGAACAGCGCCAGCAGGCTG
TATGGTGGCACTGTTCCCTGGTTTATTCTACAAGCCGAGTGAACTCCCAG
AGCACATATCTGATCTAGCCATTTCTCGTTATGACGGCGTGATTGTTGAT
TCTTCGCATGATGTTTGTATAAACGTCACGTTGGCGGATGATGAGAAAGA
GCTGTACCATCCTTTCGGCACGGCGCATTATGCAAACCATGGTCCGCCAA
ACACTCTACAATTCCTGCTTGATATACAGGCCAACAGTTTGCCGAGCCAC
GTTCGTGGTCTGATCCCCGTGCAAGAGGCGGTGACGTCAAGCATACCGTT
GTTCAGTGGGTGGGCAGATCTGGCAGCTCGGCAGCGTGTTCCAGGGGTGG
GGTTATACACAAAAGAGGGCAAGAATGTGCTACGAACGGTAGCGTTAATG
GCACTGCGCGACATTGACAATGACGAGGAAGTGCTTTTTAATTACCGTTT
CAATCCGAAGGTATGCTTGCCAGACTGGTATAAAGATCCAGAGCCGGATA
TCTCCGAAAGACGTTGGCACACGTCTTCTGGGATGTTGTTTTGA